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Aliases for ARF4 Gene

Aliases for ARF4 Gene

  • ADP Ribosylation Factor 4 2 3 5
  • ADP-Ribosylation Factor 2 2 3
  • ARF2 3 4
  • ADP-Ribosylation Factor 4 3

External Ids for ARF4 Gene

Previous HGNC Symbols for ARF4 Gene

  • ARF2

Previous GeneCards Identifiers for ARF4 Gene

  • GC03M056428
  • GC03M056911
  • GC03M057411
  • GC03M057514
  • GC03M057507
  • GC03M057532

Summaries for ARF4 Gene

Entrez Gene Summary for ARF4 Gene

  • This gene is a member of the human ARF gene family whose members encode small guanine nucleotide-binding proteins that stimulate the ADP-ribosyltransferase activity of cholera toxin and play a role in vesicular trafficking and as activators of phospholipase D. The gene products include 5 ARF proteins and 11 ARF-like proteins and constitute one family of the RAS superfamily. The ARF proteins are categorized as class I, class II and class III; this gene is a class II member. The members of each class share a common gene organization. The ARF4 gene spans approximately 12kb and contains six exons and five introns. This gene is the most divergent member of the human ARFs. Conflicting map positions at 3p14 or 3p21 have been reported for this gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for ARF4 Gene

ARF4 (ADP Ribosylation Factor 4) is a Protein Coding gene. Diseases associated with ARF4 include Cholera. Among its related pathways are Cargo trafficking to the periciliary membrane and Vesicle-mediated transport. GO annotations related to this gene include GTP binding and signal transducer activity. An important paralog of this gene is ARF5.

UniProtKB/Swiss-Prot for ARF4 Gene

  • GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Gene Wiki entry for ARF4 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARF4 Gene

Genomics for ARF4 Gene

Regulatory Elements for ARF4 Gene

Enhancers for ARF4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G057594 1.4 ENCODE dbSUPER 15.3 +0.6 649 6.0 CREB3L1 AGO1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC MEF2D GLIS1 DENND6A ARF4 FAM208A DENND6A-AS1 PDE12 LOC101929159 APPL1 HESX1 FLNB DNAH12
GH03G057690 1.1 ENCODE 14.7 -94.3 -94326 3.8 HDGF HNRNPUL1 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF207 ARF4 DENND6A FLNB-AS1 IL17RD ACOX2 SLMAP LOC101929159 DENND6A-AS1
GH03G057543 0.8 ENCODE 15.3 +53.8 53831 0.8 PKNOX1 TFAP4 MXI1 SAP130 MAX ARID4B SIN3A FEZF1 RBBP5 BMI1 ARF4 SLMAP DNAH12 GC03P057548
GH03G057555 1.2 ENCODE 9.2 +41.5 41461 3.4 MLX CREB3L1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 TBX21 ZFP41 FAM208A DENND6A LOC101929159 APPL1 HESX1 ARF4 ENSG00000272202 PDE12 GC03P057599
GH03G057670 1 Ensembl ENCODE 10.7 -73.3 -73314 2.1 HDGF PKNOX1 ZNF146 ATF1 ASH2L ZBTB40 ZNF316 POLR2A RELB IKZF2 SLMAP LOC101929159 DENND6A ARF4 RPP14 ENSG00000272202 DENND6A-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ARF4 on UCSC Golden Path with GeneCards custom track

Promoters for ARF4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000153089 1220 4001 HDGF PKNOX1 CREB3L1 ARNT AGO1 ARID4B SIN3A DMAP1 ZNF2 YY1

Genomic Location for ARF4 Gene

Chromosome:
3
Start:
57,571,363 bp from pter
End:
57,598,220 bp from pter
Size:
26,858 bases
Orientation:
Minus strand

Genomic View for ARF4 Gene

Genes around ARF4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARF4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARF4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARF4 Gene

Proteins for ARF4 Gene

  • Protein details for ARF4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P18085-ARF4_HUMAN
    Recommended name:
    ADP-ribosylation factor 4
    Protein Accession:
    P18085
    Secondary Accessions:
    • B2R7J7
    • P21371

    Protein attributes for ARF4 Gene

    Size:
    180 amino acids
    Molecular mass:
    20511 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for ARF4 Gene

neXtProt entry for ARF4 Gene

Post-translational modifications for ARF4 Gene

  • Ubiquitination at posLast=142142
  • Modification sites at PhosphoSitePlus

Other Protein References for ARF4 Gene

No data available for DME Specific Peptides for ARF4 Gene

Domains & Families for ARF4 Gene

Gene Families for ARF4 Gene

Suggested Antigen Peptide Sequences for ARF4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P18085

UniProtKB/Swiss-Prot:

ARF4_HUMAN :
  • Belongs to the small GTPase superfamily. Arf family.
Family:
  • Belongs to the small GTPase superfamily. Arf family.
genes like me logo Genes that share domains with ARF4: view

Function for ARF4 Gene

Molecular function for ARF4 Gene

GENATLAS Biochemistry:
ADP ribosylation factor 4,class II,20kDa,low molecular weight GTP binding protein,a guanine nucleotide dependent protein activator of cholera toxin,widely expressed,except in brain,involved in vesicular trafficking and activation of phospholipase D
UniProtKB/Swiss-Prot Function:
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Gene Ontology (GO) - Molecular Function for ARF4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003924 GTPase activity TAS --
GO:0005086 ARF guanyl-nucleotide exchange factor activity TAS --
GO:0005154 epidermal growth factor receptor binding IDA 12446727
GO:0005515 protein binding IPI 17956946
GO:0005525 GTP binding IEA,IDA 12446727
genes like me logo Genes that share ontologies with ARF4: view
genes like me logo Genes that share phenotypes with ARF4: view

Animal Models for ARF4 Gene

MGI Knock Outs for ARF4:
  • Arf4 tm1b(KOMP)Wtsi

Animal Model Products

CRISPR Products

miRNA for ARF4 Gene

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for ARF4

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for ARF4 Gene

Localization for ARF4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ARF4 Gene

Golgi apparatus. Membrane; Lipid-anchor.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ARF4 gene
Compartment Confidence
plasma membrane 5
extracellular 5
cytosol 5
golgi apparatus 4
endoplasmic reticulum 2
mitochondrion 1
endosome 1

Gene Ontology (GO) - Cellular Components for ARF4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005737 cytoplasm IEA --
GO:0005794 Golgi apparatus IEA --
GO:0005829 cytosol TAS --
GO:0005886 plasma membrane IEA --
genes like me logo Genes that share ontologies with ARF4: view

Pathways & Interactions for ARF4 Gene

genes like me logo Genes that share pathways with ARF4: view

Gene Ontology (GO) - Biological Process for ARF4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006471 protein ADP-ribosylation IDA 1899243
GO:0006810 transport IEA --
GO:0006888 ER to Golgi vesicle-mediated transport TAS --
GO:0006890 retrograde vesicle-mediated transport, Golgi to ER TAS --
GO:0007173 epidermal growth factor receptor signaling pathway IEA --
genes like me logo Genes that share ontologies with ARF4: view

No data available for SIGNOR curated interactions for ARF4 Gene

Drugs & Compounds for ARF4 Gene

(3) Drugs for ARF4 Gene - From: DrugBank, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Guanosine diphosphate Experimental Pharma Target 0
Guanosine triphosphate Experimental Pharma 0
genes like me logo Genes that share compounds with ARF4: view

Transcripts for ARF4 Gene

Unigene Clusters for ARF4 Gene

ADP-ribosylation factor 4:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for ARF4

Alternative Splicing Database (ASD) splice patterns (SP) for ARF4 Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b · 5c · 5d ^ 6 ^ 7a · 7b ^ 8a · 8b · 8c · 8d
SP1: - - -
SP2: - - -
SP3: - -
SP4: - - - - -
SP5: - - - - - -
SP6: -
SP7:

Relevant External Links for ARF4 Gene

GeneLoc Exon Structure for
ARF4
ECgene alternative splicing isoforms for
ARF4

Expression for ARF4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARF4 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ARF4 Gene



Protein tissue co-expression partners for ARF4 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ARF4 Gene:

ARF4

SOURCE GeneReport for Unigene cluster for ARF4 Gene:

Hs.652183

Evidence on tissue expression from TISSUES for ARF4 Gene

  • Nervous system(4.9)
  • Skin(4.8)
  • Liver(4.4)
  • Bone marrow(4.3)
  • Lung(4.1)
  • Intestine(3.4)
  • Kidney(3.3)
  • Pancreas(3.3)
  • Stomach(2.7)
  • Blood(2.4)
  • Gall bladder(2.1)
  • Adrenal gland(2)
  • Heart(2)
  • Spleen(2)
  • Thyroid gland(2)
genes like me logo Genes that share expression patterns with ARF4: view

Primer Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARF4 Gene

Orthologs for ARF4 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for ARF4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ARF4 35 34
  • 99.63 (n)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ARF4 35
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ARF4 35
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ARF4 35 34
  • 95.37 (n)
OneToOne
mouse
(Mus musculus)
Mammalia Arf4 35 16 34
  • 92.59 (n)
OneToOne
rat
(Rattus norvegicus)
Mammalia Arf4 34
  • 91.48 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia ARF4 35
  • 48 (a)
OneToOne
chicken
(Gallus gallus)
Aves ARF4 35 34
  • 83.84 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ARF4 35
  • 97 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia arf4 34
  • 79.26 (n)
African clawed frog
(Xenopus laevis)
Amphibia LOC398551 34
zebrafish
(Danio rerio)
Actinopterygii arf4a 35 34
  • 76.85 (n)
OneToMany
ARF4 (3 of 3) 35
  • 70 (a)
OneToMany
ARF4 (2 of 3) 35
  • 69 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta Arf79F 36
  • 82 (a)
Arf102F 36 34 35
  • 69.26 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP002931 34
  • 71.3 (n)
worm
(Caenorhabditis elegans)
Secernentea arf-3 36 35
  • 84 (a)
arf-1 36
  • 81 (a)
arl-6 36
  • 58 (a)
arl-5 36
  • 46 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes ARF1 35
  • 72 (a)
ManyToMany
ARF2 35
  • 71 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 74 (a)
OneToMany
Species where no ortholog for ARF4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ARF4 Gene

ENSEMBL:
Gene Tree for ARF4 (if available)
TreeFam:
Gene Tree for ARF4 (if available)

Paralogs for ARF4 Gene

Variants for ARF4 Gene

Sequence variations from dbSNP and Humsavar for ARF4 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000012709 -- 57,590,290(+) GACCA(A/G)CCTGG intron-variant
rs1000042127 -- 57,578,636(+) CACCA(C/T)ACCTA intron-variant
rs1000101374 -- 57,572,123(+) ATACT(A/G)TTTAA intron-variant, utr-variant-3-prime
rs1000132113 -- 57,591,927(+) CTAAT(G/T)GGTAT intron-variant
rs1000178729 -- 57,596,438(+) GTTTT(C/T)GGAGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ARF4 Gene

Variant ID Type Subtype PubMed ID
nsv1008684 CNV gain 25217958
nsv590368 CNV gain 21841781

Variation tolerance for ARF4 Gene

Residual Variation Intolerance Score: 51% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ARF4 Gene

Human Gene Mutation Database (HGMD)
ARF4
SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARF4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ARF4 Gene

Disorders for ARF4 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ARF4 Gene - From: Novoseek and GeneCards

Disorder Aliases PubMed IDs
cholera
  • cholera - vibrio cholerae
- elite association - COSMIC cancer census association via MalaCards
Search ARF4 in MalaCards View complete list of genes associated with diseases

Relevant External Links for ARF4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARF4
genes like me logo Genes that share disorders with ARF4: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ARF4 Gene

Publications for ARF4 Gene

  1. Cloning and characterization of the human ADP-ribosylation factor 4 gene. (PMID: 10524252) Lebeda R.A. … Haun R.S. (Gene 1999) 3 4 22 64
  2. Selective amplification of an mRNA and related pseudogene for a human ADP-ribosylation factor, a guanine nucleotide-dependent protein activator of cholera toxin. (PMID: 2107548) Monaco L. … Vaughan M. (Proc. Natl. Acad. Sci. U.S.A. 1990) 2 3 4 64
  3. Identification of ADP-ribosylation factor 4 as a suppressor of N-(4-hydroxyphenyl)retinamide-induced cell death. (PMID: 19041174) Woo I.S. … Seo H.G. (Cancer Lett. 2009) 3 22 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. Human ADP-ribosylation factor 4 (ARF4) gene. Map position 3p14.1. (PMID: 10099884) Kim H.S. (Chromosome Res. 1998) 3 22 64

Products for ARF4 Gene

  • Addgene plasmids for ARF4

Sources for ARF4 Gene

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