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Aliases for ARF3 Gene

Aliases for ARF3 Gene

  • ADP Ribosylation Factor 3 2 3 5
  • Small GTP Binding Protein 2

External Ids for ARF3 Gene

Previous GeneCards Identifiers for ARF3 Gene

  • GC12M049256
  • GC12M049556
  • GC12M049046
  • GC12M047616
  • GC12M049329
  • GC12M046361
  • GC12M049299

Summaries for ARF3 Gene

Entrez Gene Summary for ARF3 Gene

  • ADP-ribosylation factor 3 (ARF3) is a member of the human ARF gene family. These genes encode small guanine nucleotide-binding proteins that stimulate the ADP-ribosyltransferase activity of cholera toxin and play a role in vesicular trafficking and as activators of phospholipase D. The gene products include 6 ARF proteins and 11 ARF-like proteins and constitute 1 family of the RAS superfamily. The ARF proteins are categorized as class I (ARF1, ARF2,and ARF3), class II (ARF4 and ARF5) and class III (ARF6) and members of each class share a common gene organization. The ARF3 gene contains five exons and four introns. [provided by RefSeq, Jul 2008]

GeneCards Summary for ARF3 Gene

ARF3 (ADP Ribosylation Factor 3) is a Protein Coding gene. Diseases associated with ARF3 include Cholera and Distal Hereditary Motor Neuropathy, Type Ii. Among its related pathways are Vesicle-mediated transport and Transport to the Golgi and subsequent modification. GO annotations related to this gene include GTP binding and signal transducer activity. An important paralog of this gene is ARF1.

UniProtKB/Swiss-Prot for ARF3 Gene

  • GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Gene Wiki entry for ARF3 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARF3 Gene

Genomics for ARF3 Gene

Regulatory Elements for ARF3 Gene

Enhancers for ARF3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G048881 1.5 FANTOM5 Ensembl ENCODE 11.6 +74.4 74356 2.7 ELF3 FOXA2 PKNOX1 SIN3A BMI1 ZNF48 RAD21 YY1 RARA GATA2 FKBP11 ARF3 ENSG00000255863 WNT10B CCDC65 RND1 OR8S1 GC12M048893 RNU6-600P
GH12G049263 1.4 ENCODE dbSUPER 11.1 -309.0 -308978 6.6 CREB3L1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 ZFP41 MEF2D C1QL4 DDX23 CACNB3 CCNT1 CERS5 PRPH LOC390314 ARF3 RPL32P27 TUBA1C
GH12G048977 1.2 Ensembl ENCODE 12.5 -22.2 -22178 5.1 PKNOX1 SIN3A ZNF2 GLIS2 ZNF143 FOS ZNF592 SREBF1 CBX8 GLIS1 ARF3 FKBP11 ENSG00000255863 WNT10B WNT1 GC12P049003
GH12G048156 1.3 ENCODE dbSUPER 11.1 +800.1 800097 2.5 PKNOX1 FOXA2 CREB3L1 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 DEK SENP1 DDX23 CCDC184 PFKM RPL37P19 CCNT1 ZNF641 H1FNT ASB8 KANSL2
GH12G048104 1.2 ENCODE 11.1 +851.3 851262 4.1 CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 RPL37P19 CACNB3 CCDC184 ZNF641 H1FNT OR5BK1P ADCY6 ARF3 RNU6-1203P PRKAG1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ARF3 on UCSC Golden Path with GeneCards custom track

Promoters for ARF3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000051551 451 1801 HDGF PKNOX1 CREB3L1 AGO1 WRNIP1 ARID4B SIN3A FEZF1 ZNF2 ZNF207

Genomic Location for ARF3 Gene

Chromosome:
12
Start:
48,931,156 bp from pter
End:
48,957,551 bp from pter
Size:
26,396 bases
Orientation:
Minus strand

Genomic View for ARF3 Gene

Genes around ARF3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARF3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARF3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARF3 Gene

Proteins for ARF3 Gene

  • Protein details for ARF3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P61204-ARF3_HUMAN
    Recommended name:
    ADP-ribosylation factor 3
    Protein Accession:
    P61204
    Secondary Accessions:
    • A8K6G8
    • B7ZB63
    • P16587

    Protein attributes for ARF3 Gene

    Size:
    181 amino acids
    Molecular mass:
    20601 Da
    Quaternary structure:
    • Interacts with PRKCABP. Interacts with PI4KB and NCS1/FREQ at the Golgi complex.

    Alternative splice isoforms for ARF3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ARF3 Gene

Post-translational modifications for ARF3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ARF3 Gene

Domains & Families for ARF3 Gene

Gene Families for ARF3 Gene

Protein Domains for ARF3 Gene

Suggested Antigen Peptide Sequences for ARF3 Gene

Graphical View of Domain Structure for InterPro Entry

P61204

UniProtKB/Swiss-Prot:

ARF3_HUMAN :
  • Belongs to the small GTPase superfamily. Arf family.
Family:
  • Belongs to the small GTPase superfamily. Arf family.
genes like me logo Genes that share domains with ARF3: view

Function for ARF3 Gene

Molecular function for ARF3 Gene

GENATLAS Biochemistry:
ADP ribosylation factor 3,class I,low molecular weight GTP binding protein,a guanine nucleotide dependent protein activator of cholera toxin,with two transcripts resulting from alternative use of polyadenylation transcripts,(20kDa),widely expressed,especially in brain,Ras superfamily member,involved in vesicular trafficking and activation of phospholipase D
UniProtKB/Swiss-Prot Function:
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Gene Ontology (GO) - Molecular Function for ARF3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003924 GTPase activity TAS 1744102
GO:0005525 GTP binding IEA --
genes like me logo Genes that share ontologies with ARF3: view
genes like me logo Genes that share phenotypes with ARF3: view

Animal Models for ARF3 Gene

MGI Knock Outs for ARF3:
  • Arf3 tm1b(EUCOMM)Hmgu

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for ARF3

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for ARF3 Gene

Localization for ARF3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ARF3 Gene

Golgi apparatus. Cytoplasm, perinuclear region.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ARF3 gene
Compartment Confidence
extracellular 5
golgi apparatus 5
cytosol 4
plasma membrane 2
cytoskeleton 2
mitochondrion 2
endosome 2
nucleus 1
endoplasmic reticulum 1
lysosome 1

Gene Ontology (GO) - Cellular Components for ARF3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane TAS --
GO:0005622 intracellular IEA --
GO:0005737 cytoplasm IEA --
GO:0005794 Golgi apparatus IEA --
GO:0048471 perinuclear region of cytoplasm IEA --
genes like me logo Genes that share ontologies with ARF3: view

Pathways & Interactions for ARF3 Gene

genes like me logo Genes that share pathways with ARF3: view

Gene Ontology (GO) - Biological Process for ARF3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006661 phosphatidylinositol biosynthetic process TAS --
GO:0006810 transport IEA --
GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IGI 24768165
GO:0007264 small GTPase mediated signal transduction IEA --
GO:0015031 protein transport IEA --
genes like me logo Genes that share ontologies with ARF3: view

No data available for SIGNOR curated interactions for ARF3 Gene

Drugs & Compounds for ARF3 Gene

(1) Drugs for ARF3 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Guanosine triphosphate Experimental Pharma 0

(4) Additional Compounds for ARF3 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with ARF3: view

Transcripts for ARF3 Gene

mRNA/cDNA for ARF3 Gene

(3) REFSEQ mRNAs :
(13) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ARF3 Gene

ADP-ribosylation factor 3:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for ARF3

Alternative Splicing Database (ASD) splice patterns (SP) for ARF3 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4a · 4b · 4c · 4d · 4e · 4f ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11a · 11b · 11c
SP1: - - - - - - - - -
SP2: - - - - - - - - - - -
SP3: - - - - - - - - - - -
SP4: - - - - - -
SP5: - - - - -
SP6: - - - - - - - - - - - - - - - - - -
SP7: -
SP8: - - - - - - - - - - - - - - - - - -
SP9:
SP10: - -

Relevant External Links for ARF3 Gene

GeneLoc Exon Structure for
ARF3
ECgene alternative splicing isoforms for
ARF3

Expression for ARF3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARF3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for ARF3 Gene

This gene is overexpressed in Brain (24.4), Saliva (22.7), and Heart (17.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ARF3 Gene



Protein tissue co-expression partners for ARF3 Gene

NURSA nuclear receptor signaling pathways regulating expression of ARF3 Gene:

ARF3

SOURCE GeneReport for Unigene cluster for ARF3 Gene:

Hs.119177

Evidence on tissue expression from TISSUES for ARF3 Gene

  • Nervous system(5)
  • Skin(4.8)
  • Lung(4.7)
  • Kidney(3.5)
  • Intestine(3.1)
  • Pancreas(3)
  • Eye(2.8)
  • Heart(2.8)
  • Stomach(2.8)
  • Liver(2.7)
  • Muscle(2.7)
  • Adrenal gland(2.3)
  • Blood(2.3)
genes like me logo Genes that share expression patterns with ARF3: view

Primer Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARF3 Gene

Orthologs for ARF3 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for ARF3 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia ARF1 35
  • 100 (a)
OneToOne
ARF3 34
  • 95.58 (n)
chimpanzee
(Pan troglodytes)
Mammalia ARF3 34
  • 100 (n)
cow
(Bos Taurus)
Mammalia ARF3 34
  • 95.76 (n)
mouse
(Mus musculus)
Mammalia Arf3 16 35 34
  • 92.82 (n)
rat
(Rattus norvegicus)
Mammalia Arf3 34
  • 91.71 (n)
lizard
(Anolis carolinensis)
Reptilia ARF3 35
  • 100 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia arf3 34
  • 83.79 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.6539 34
zebrafish
(Danio rerio)
Actinopterygii arf3b 35
  • 100 (a)
OneToOne
arf3a 34
  • 81.77 (n)
fruit fly
(Drosophila melanogaster)
Insecta Arf79F 36 35
  • 94 (a)
Arf102F 36
  • 81 (a)
worm
(Caenorhabditis elegans)
Secernentea arf-1 36
  • 92 (a)
arf-1.2 35
  • 92 (a)
OneToMany
arf-3 36
  • 84 (a)
arl-6 36
  • 61 (a)
arl-5 36
  • 48 (a)
arl-query 36
  • 41 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes ARF1 35
  • 76 (a)
ManyToMany
ARF2 35
  • 75 (a)
ManyToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons ARFA1E 34
  • 75.37 (n)
soybean
(Glycine max)
eudicotyledons Gma.11398 34
rice
(Oryza sativa)
Liliopsida Os07g0223400 34
  • 76.85 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 74 (a)
ManyToMany
Species where no ortholog for ARF3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ARF3 Gene

ENSEMBL:
Gene Tree for ARF3 (if available)
TreeFam:
Gene Tree for ARF3 (if available)

Paralogs for ARF3 Gene

Pseudogenes.org Pseudogenes for ARF3 Gene

genes like me logo Genes that share paralogs with ARF3: view

Variants for ARF3 Gene

Sequence variations from dbSNP and Humsavar for ARF3 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000314829 -- 48,940,062(+) CCCAC(A/G)CTGTA reference, missense
rs1000418782 -- 48,931,799(+) ATTTA(C/T)AACAG intron-variant
rs1000455117 -- 48,953,427(+) TTAAA(A/G)AAAGG intron-variant
rs1000524980 -- 48,933,598(+) TCGGA(A/G)GCTGA intron-variant
rs1000536951 -- 48,945,667(+) GCAGT(A/G)AGCCG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ARF3 Gene

Variant ID Type Subtype PubMed ID
nsv832404 CNV gain 17160897

Variation tolerance for ARF3 Gene

Residual Variation Intolerance Score: 37.8% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ARF3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARF3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ARF3 Gene

Disorders for ARF3 Gene

MalaCards: The human disease database

(4) MalaCards diseases for ARF3 Gene - From: DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
cholera
  • cholera - vibrio cholerae
distal hereditary motor neuropathy, type ii
  • dsma2
hypotrichosis 3
  • htss2
cardiomyopathy, dilated, 1p
  • dilated cardiomyopathy 1p
- elite association - COSMIC cancer census association via MalaCards
Search ARF3 in MalaCards View complete list of genes associated with diseases

Relevant External Links for ARF3

Genetic Association Database (GAD)
ARF3
Human Genome Epidemiology (HuGE) Navigator
ARF3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ARF3
genes like me logo Genes that share disorders with ARF3: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ARF3 Gene

Publications for ARF3 Gene

  1. Interaction of the PDZ domain of human PICK1 with class I ADP- ribosylation factors. (PMID: 10623590) Takeya R. … Sumimoto H. (Biochem. Biophys. Res. Commun. 2000) 3 4 22 64
  2. Assignment of human ADP ribosylation factor (ARF) genes ARF1 and ARF3 to chromosomes 1q42 and 12q13, respectively. (PMID: 8661066) Hirai M. … Hashimoto K. (Genomics 1996) 2 3 22 64
  3. Isolation and characterization of the human gene for ADP-ribosylation factor 3, a 20-kDa guanine nucleotide-binding protein activator of cholera toxin. (PMID: 1744102) Tsai S.C. … Vaughan M. (J. Biol. Chem. 1991) 3 4 22 64
  4. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey S.D. … Anand S. (Diabetes Care 2010) 3 46 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64

Products for ARF3 Gene

  • Addgene plasmids for ARF3

Sources for ARF3 Gene

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