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Aliases for ARC Gene

Aliases for ARC Gene

  • Activity-Regulated Cytoskeleton-Associated Protein 2 3
  • Activity-Regulated Gene 3.1 Protein Homolog 3 4
  • ARC/ARG3.1 3 4
  • KIAA0278 4 6
  • Arg3.1 3 4

External Ids for ARC Gene

Previous GeneCards Identifiers for ARC Gene

  • GC08U990084
  • GC08M143591
  • GC08M143690
  • GC08M138948

Summaries for ARC Gene

GeneCards Summary for ARC Gene

ARC (Activity-Regulated Cytoskeleton-Associated Protein) is a Protein Coding gene. Diseases associated with ARC include myoclonus, familial cortical. Among its related pathways are PEDF Induced Signaling and Amphetamine addiction.

UniProtKB/Swiss-Prot for ARC Gene

  • Required for consolidation of synaptic plasticity as well as formation of long-term memory. Regulates endocytosis of AMPA receptors in response to synaptic activity. Required for homeostatic synaptic scaling of AMPA receptors (By similarity). Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the stress fiber dynamics and cell migration.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARC Gene

Genomics for ARC Gene

Regulatory Elements for ARC Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ARC Gene

Start:
142,611,044 bp from pter
End:
142,614,472 bp from pter
Size:
3,429 bases
Orientation:
Minus strand

Genomic View for ARC Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ARC Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARC Gene

Proteins for ARC Gene

  • Protein details for ARC Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7LC44-ARC_HUMAN
    Recommended name:
    Activity-regulated cytoskeleton-associated protein
    Protein Accession:
    Q7LC44
    Secondary Accessions:
    • Q9UJW6
    • Q9Y469

    Protein attributes for ARC Gene

    Size:
    396 amino acids
    Molecular mass:
    45316 Da
    Quaternary structure:
    • Interacts with SH3GL1/endophilin-2, SH3GL3/endophilin-3 and DNM2/DYN2.
    SequenceCaution:
    • Sequence=BAA19667.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for ARC Gene

Proteomics data for ARC Gene at MOPED

Post-translational modifications for ARC Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ARC Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ARC Gene

Domains for ARC Gene

Protein Domains for ARC Gene

Suggested Antigen Peptide Sequences for ARC Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q7LC44

UniProtKB/Swiss-Prot:

ARC_HUMAN :
  • Q7LC44
Family:
  • Belongs to the ARC/ARG3.1 family.
genes like me logo Genes that share domains with ARC: view

No data available for Gene Families for ARC Gene

Function for ARC Gene

Molecular function for ARC Gene

UniProtKB/Swiss-Prot Function: Required for consolidation of synaptic plasticity as well as formation of long-term memory. Regulates endocytosis of AMPA receptors in response to synaptic activity. Required for homeostatic synaptic scaling of AMPA receptors (By similarity). Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the stress fiber dynamics and cell migration.

Gene Ontology (GO) - Molecular Function for ARC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with ARC: view
genes like me logo Genes that share phenotypes with ARC: view

Animal Models for ARC Gene

MGI Knock Outs for ARC:

Animal Model Products

CRISPR Products

miRNA for ARC Gene

miRTarBase miRNAs that target ARC

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for ARC Gene

Localization for ARC Gene

Subcellular locations from UniProtKB/Swiss-Prot for ARC Gene

Cytoplasm, cytoskeleton. Endosome. Cytoplasmic vesicle, secretory vesicle, acrosome. Cell junction, synapse, postsynaptic cell membrane, postsynaptic density. Cell projection, dendrite. Cell projection, dendritic spine. Cell junction, synapse. Note=Associated with the cell cortex of neuronal soma and dendrites. Enriched in postsynaptic density of dendritic spines. Associated with the sperm tail (By similarity). Enriched on the plasma membrane. {ECO:0000250, ECO:0000269 PubMed:21834987}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ARC Gene COMPARTMENTS Subcellular localization image for ARC gene
Compartment Confidence
plasma membrane 5
cytoskeleton 2
cytosol 2
endosome 2
nucleus 2

Gene Ontology (GO) - Cellular Components for ARC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001669 acrosomal vesicle IEA --
GO:0005737 cytoplasm IDA 21834987
GO:0005768 endosome IEA --
GO:0005886 plasma membrane IDA 21834987
GO:0014069 postsynaptic density IEA --
genes like me logo Genes that share ontologies with ARC: view

Pathways for ARC Gene

genes like me logo Genes that share pathways with ARC: view

Pathways by source for ARC Gene

1 Qiagen pathway for ARC Gene
1 KEGG pathway for ARC Gene

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Gene Ontology (GO) - Biological Process for ARC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006897 endocytosis IEA --
GO:0007010 cytoskeleton organization IMP 21834987
GO:0007492 endoderm development IEA --
GO:0007612 learning IEA --
GO:0009952 anterior/posterior pattern specification IEA --
genes like me logo Genes that share ontologies with ARC: view

Compounds for ARC Gene

(3) Novoseek inferred chemical compound relationships for ARC Gene

Compound -log(P) Hits PubMed IDs
nmda 27.5 2
tyrosine 1.45 3
dopamine 0 1
genes like me logo Genes that share compounds with ARC: view

Transcripts for ARC Gene

mRNA/cDNA for ARC Gene

(40) Selected AceView cDNA sequences:
(4) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ARC Gene

Activity-regulated cytoskeleton-associated protein:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ARC

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARC Gene

No ASD Table

Relevant External Links for ARC Gene

GeneLoc Exon Structure for
ARC
ECgene alternative splicing isoforms for
ARC

Expression for ARC Gene

mRNA expression in normal human tissues for ARC Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ARC Gene

This gene is overexpressed in Pituitary (5.7) and Brain - Cortex (5.1).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for ARC Gene

SOURCE GeneReport for Unigene cluster for ARC Gene Hs.40888

genes like me logo Genes that share expressions with ARC: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for ARC Gene

Orthologs for ARC Gene

This gene was present in the common ancestor of chordates.

Orthologs for ARC Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ARC 35
  • 99.43 (n)
  • 98.86 (a)
ARC 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ARC 35
  • 89.98 (n)
  • 91.67 (a)
ARC 36
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Arc 35
  • 85.77 (n)
  • 92.93 (a)
Arc 16
Arc 36
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ARC 36
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ARC 36
  • 77 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Arc 35
  • 86.2 (n)
  • 92.42 (a)
chicken
(Gallus gallus)
Aves ARC 35
  • 70.78 (n)
  • 73.01 (a)
ARC 36
  • 71 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ARC 36
  • 68 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia arc 35
  • 54.06 (n)
  • 46.33 (a)
Species with no ortholog for ARC:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ARC Gene

ENSEMBL:
Gene Tree for ARC (if available)
TreeFam:
Gene Tree for ARC (if available)

Paralogs for ARC Gene

No data available for Paralogs for ARC Gene

Variants for ARC Gene

Sequence variations from dbSNP and Humsavar for ARC Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs2234911 -- 142,613,783(-) GCAGA(C/T)GGCTA reference, synonymous-codon
rs10097505 -- 142,612,823(+) AGAGT(A/G)TGGAG utr-variant-3-prime
rs13252981 -- 142,610,726(+) CAGGC(A/C)TGAGC downstream-variant-500B
rs13260813 -- 142,611,034(+) AAACA(A/C)CATGA downstream-variant-500B
rs28403912 -- 142,614,317(+) CGGAC(A/G)GAGGG utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for ARC Gene

Variant ID Type Subtype PubMed ID
esv2661137 CNV Deletion 23128226
dgv7910n71 CNV Loss 21882294
nsv470245 CNV Loss 18288195
nsv891626 CNV Gain 21882294
dgv7913n71 CNV Loss 21882294
dgv7914n71 CNV Loss 21882294
dgv7915n71 CNV Loss 21882294
dgv904n27 CNV Loss 19166990
dgv7916n71 CNV Loss 21882294

Relevant External Links for ARC Gene

HapMap Linkage Disequilibrium report
ARC
Human Gene Mutation Database (HGMD)
ARC

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ARC Gene

Disorders for ARC Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for ARC Gene including...

Search for ARC Gene in MalaCards »
genes like me logo Genes that share disorders with ARC: view

No data available for UniProtKB/Swiss-Prot for ARC Gene

Publications for ARC Gene

  1. Mutation screening of the chromosome 8q24.3-human activity-regulated cytoskeleton-associated gene (ARC) in idiopathic generalized epilepsy. (PMID: 10970730) Haug K. … Heils A. (Mol. Cell. Probes 2000) 2 3 4 23
  2. Activity-regulated cytoskeleton-associated protein Arc/Arg3.1 binds to spectrin and associates with nuclear promyelocytic leukemia (PML) bodies. (PMID: 17466953) Bloomer W.A. … VanDongen A.M. (Brain Res. 2007) 2 3 23
  3. Identification and characterization of a set of conserved and new regulators of cytoskeletal organisation, cell morphology and migration. (PMID: 21834987) Bai S.W. … Ridley A.J. (BMC Biol. 2011) 3 4
  4. Human activity-regulated cytoskeleton-associated gene (ARC) maps to chromosome 8q24. (PMID: 11117363) Kremerskothen J. … Barnekow A. (Chromosome Res. 2000) 3 23
  5. Prediction of the coding sequences of unidentified human genes. VI. The coding sequences of 80 new genes (KIAA0201-KIAA0280) deduced by analysis of cDNA clones from cell line KG-1 and brain. (PMID: 9039502) Nagase T. … Nomura N. (DNA Res. 1996) 3 4

Products for ARC Gene

Sources for ARC Gene

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