ARC Gene
protein-coding GIFtS : 53
GCID: GC08 M143690
activity-regulated cytoskeleton-associated protein
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Aliasesfor ARC gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Activity-Regulated Cytoskeleton-Associated Protein 1 2 Arg3.11 2 3 KIAA02781 3 5 Activity-Regulated Gene 3.1 Protein Homolog2 3 ARC/ARG3.12 3
Export aliases for ARC gene to outside databases Previous GC identifers: GC08U990084 GC08M143591 GC08M138948
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Summariesfor ARC gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: ARC_HUMAN, Q7LC44 Function : Required for consolidation of synaptic plasticity as well as formation of long-term memory. Regulatesendocytosis of AMPA receptors in response to synaptic activity. Required for homeostatic synaptic scaling of AMPA receptors (By similarity). Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the stress fiber dynamics and cell migration
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Genomic Viewsfor ARC gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000008.10 NC_018919.1 NT_008046.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the ARC gene promoter: Sp1 NRSF form 1 STAT5A NRSF form 2 NF-kappaB NF-kappaB1 Other transcription factors Search SABiosciences Chromatin IP Primers for ARC Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat ARC
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 8q24.3 Ensembl cytogenetic band: 8q24.3 HGNC cytogenetic band: 8q24.3 ARC Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 8 GeneLoc Exon Structure
GeneLoc location for GC08M143690: view genomic region
(about GC identifiers )
Start:
143,692,405 bp from pter
End:
143,696,833 bp from pter
Size:
4,429 bases
Orientation:
minus strand
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Proteinsfor ARC gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: ARC_HUMAN, Q7LC44 (See
protein sequence )Recommended Name: Activity-regulated cytoskeleton-associated protein Size : 396 amino acids; 45316 Da
Subunit : Interacts with SH3GL1/endophilin-2, SH3GL3/endophilin-3 and DNM2/DYN2 (By similarity)
Subcellular location : Cytoplasm, cytoskeleton (By similarity). Endosome (By similarity). Cytoplasmic vesicle, secretoryvesicle, acrosome (By similarity). Cell junction, synapse, postsynaptic cell membrane, postsynaptic density (By similarity). Cell projection, dendrite (By similarity). Cell projection, dendritic spine (By similarity). Cell junction, synapse (By similarity). Note=Associated with the cell cortex of neuronal soma and dendrites. Enriched in postsynaptic density of dendritic spines. Associated with the sperm tail (By similarity). Enriched on the plasma membrane
Sequence caution : Sequence=BAA19667.1; Type=Erroneous initiation;
Secondary accessions : Q9UJW6 Q9Y469Explore the universe of human proteins at neXtProt for ARC: NX_Q7LC44 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q7LC44 ARC Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_056008.1 ENSEMBL proteins: ENSP00000349022 Human Recombinant Protein Products: Gene Ontology (GO): 5/8 cellular component terms (GO ID links to tree view) (see all 8 ): About this table
ARC for ontologies About GeneDecksing ARC Antibody Products: Assay Products for ARC:
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Protein
Domains / Familiesfor ARC gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
ARC for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q7LC44 ProtoNet protein and cluster: Q7LC44
UniProtKB/Swiss-Prot: ARC_HUMAN, Q7LC44 Similarity : Belongs to the ARC/ARG3.1 family
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Functionfor ARC gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: ARC_HUMAN, Q7LC44 Function : Required for consolidation of synaptic plasticity as well as formation of long-term memory. Regulatesendocytosis of AMPA receptors in response to synaptic activity. Required for homeostatic synaptic scaling of AMPA receptors (By similarity). Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the stress fiber dynamics and cell migration
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ARC (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ARC (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): ARC (NM_001142281 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ARC Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ARC
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ARC
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005515 protein binding
-- --
ARC for ontologies About GeneDecksing Animal Models: Mouse knock-outs for ARC: Arc tm1.1Kuhl Arc tm1Amt 5 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Arc) :
ARC for phenotypes About GeneDecksing
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Pathways & Interactionsfor ARC gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways   About this table See pathways by source Super-pathway contained gene-specific pathways 1 PEDF Induced Signaling
1 Downloadable PowerPoint Slide of QIAGEN Pathway Central Maps for ARC Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for ARC STRING Interaction
Network Preview (showing 5 interactants - click image to see 18)5/20 Interacting proteins for ARC (Q7LC44 2 , 3 ENSP00000349022 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 20 )About this table Gene Ontology (GO): 5/8 biological process terms (GO ID links to tree view) (see all 8 ): About this table
ARC for ontologies About GeneDecksing
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Drugs & Compoundsfor ARC gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
ARC for compounds About GeneDecksing Browse Tocris compounds for ARC 3 Novoseek chemical compound relationships for ARC gene About this table
Search CenterWatch for drugs/clinical trials and news about ARC
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Transcriptsfor ARC gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
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siRNAs from
OriGene ,
QIAGEN ,
shRNA from
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microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
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SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for ARC gene: NM_015193.4 Unigene Cluster for ARC:
Activity-regulated cytoskeleton-associated protein Hs.40888 [show with all ESTs ] Unigene Representative Sequence: BC075802 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000356613 (uc003ywn.1 ) ENST00000581404 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ARC (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ARC (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): ARC (NM_001142281 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ARC Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ARC
Additional cDNA sequence: AF193421.1 BC012321.1 BC075802.1 D87468.1
2 DOTS entries : DT.105171 DT.95264726
24/40 AceView cDNA sequences (see all 40 ):
BC012321 CB154449 BG054976 AI972927 BG056710 D87468 AI399718 BI197943 BG339449 BF338615 NM_015193 BG056647 AF193421 BF525603 BF312181 BQ013642 BG058542 BC075802 CB156410 BE795019 BE855583 AI498494 AW015459 BI752734 GeneLoc Exon Structure
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Expression for ARC gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section ARC expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: AGGCTGTGGC
About this image ARC expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See ARC Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for ARC SOURCE GeneReport for Unigene cluster: Hs.40888 SABiosciences Expression via Pathway-Focused PCR Array including ARC : Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for ARCBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat ARC QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat ARC QIAGEN QuantiFast Probe-based Assays in human , mouse , rat ARC In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ARC
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Orthologsfor ARC gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for ARC gene from 3/8 species (see all 8 ) About this table
ENSEMBL Gene Tree for ARC (if available)TreeFam Gene Tree for ARC (if available)
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Paralogsfor ARC gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor ARC gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 8 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for ARC (143692405 - 143696833 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 2 variations for ARC 2 CNVs : 53348 30296 Human Gene Mutation Database (HGMD) : ARC SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing ARC
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Disorders
/ Diseasesfor ARC gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
ARC for disorders About GeneDecksing
OMIM gene information: 612461
OMIM disorders : --8 diseases for ARC : About MalaCards idiopathic generalized epilepsy generalized epilepsy mental retardation syndrome neurodegenerative disease myopathy neuroblastoma leukemia neuronitis Export disorders for ARC gene to outside databases
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Publicationsfor ARC gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for ARC gene, integrated from 9 sources (see all 48 ): (articles sorted by number of sources associating them with ARC) Utopia : connect your pdf to the dynamic world of online information
Mutation screening of the chromosome 8q24.3-human activity-regulated cytoskeleton-associated gene (ARC) in idiopathic generalized epilepsy. (PubMed id 10970730) 1 , 2 , 3, 9 Haug K.... Heils A. (2000) Activity-regulated cytoskeleton-associated protein Arc/Arg3.1 binds to spectrin and associates with nuclear promyelocytic leukemia (PML) bodies. (PubMed id 17466953) 1 , 3, 9 Bloomer W.A....VanDongen A.M. (2007) Identification and characterization of a set of conserved and new regulators of cytoskeletal organisation, cell morphology and migration. (PubMed id 21834987) 1 , 2 Bai S.W.... Ridley A.J. (2011) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Prediction of the coding sequences of unidentified human genes. VI. The coding sequences of 80 new genes (KIAA0201-KIAA0280) deduced by analysis of cDNA clones from cell line KG-1 and brain. (PubMed id 9039502) 1 , 2 Nagase T....Nomura N. (1996) Human activity-regulated cytoskeleton-associated gene (ARC) maps to chromosome 8q24. (PubMed id 11117363) 1 , 9 Kremerskothen J. and Barnekow A. (2000) Balancing Arc synthesis, mRNA decay, and proteasomal degradation: maximal protein expression triggered by rapid eye movement sleep-lik e bursts of muscarinic cholinergic receptor stimulation. (PubMed id 22584581) 1 Soule J....Bramham C.R. (2012) Contrast-enhanced magnetic resonance microangiography reveals remodeling of the cerebral microvasculature in transgenic ArcAb mice. (PubMed id 22302811) 1 Klohs J....Rudin M. (2012) A novel ARC gene polymorphism is associated with reduc ed risk of Alzheimer's disease. (PubMed id 22622366) 1 Landgren S....Kettunen P. (2012) Arc/Arg3.1 regulates an endosomal pathway essential f or activity-dependent I^-amyloid generation. (PubMed id 22036569) 1 Wu J....Worley P.F. (2011)
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External Searches for ARC gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing ARC gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing ARC gene
(According to HUGE )
About This Section
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Specialized Databases showing ARC gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for ARC Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for ARC gene: Search GeneIP for patents involving ARC GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor ARC gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for ARC OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for ARC OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for ARC OriGene Protein Over-expression Lysate for ARC Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for ARC OriGene 3'-UTR Clone for ARC OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ARC OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ARC Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for ARC OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for ARC OriGene Custom Protein Services for ARC OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ARC QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing ARC QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat ARC QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat ARC QIAGEN QuantiFast Probe-based Assays in human , mouse , rat ARC QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat ARC
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ARC Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ARC
ThermoFisher Antibodies for ARC
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ARC
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Aliases for ARC
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Disorders / Diseases for ARC
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Expression for ARC
Function for ARC
Genomic Views for ARC
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