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Aliases & Descriptions for ARAF
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| A-RAF 2 | | A-raf-1 3 | | ARAF1 2, 3 | | EC 2.7.11.1 3 | | OTTHUMP00000023212 2 | | PKS 3 | | PKS2 2, 3 | | RAFA1 2 |
| | | Descriptions |
|---|
| Oncogene ARAF1 2 | | Proto-oncogene Pks 3 | | Ras-binding protein DA-Raf 2 | | v-raf murine sarcoma 3611 viral oncogene homolog 2 | | v-raf murine sarcoma 3611 viral oncogene homolog 1 1, 2 |
|
| | Search outside databases for aliases for ARAF genePrevious GC identifer: GC0XP047177 |
Summaries for ARAF(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: ARAF_HUMAN, P10398Function: Involved in the transduction of mitogenic signals from the cell membrane to the nucleusGene Wiki entry for ARAF |
Genomic Location for ARAF
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ARAF gene 
Entrez Gene cytogenetic band: Xp11.4-p11.2 Ensembl cytogenetic band: Xp11.23 HGNC cytogenetic band: Xp11.3-p11.23ARAF Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome X GeneLoc Exon Structure GeneLoc location for GC0XP047305:
(about GC identifiers)
Start:
|
47,305,522 bp from pter |
End:
|
47,316,264 bp from pter |
Size:
|
10,743 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000023.9 NT_079573.3
| Proteins for ARAF
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: ARAF_HUMAN, P10398 (See
protein sequence)Recommended Name: A-Raf proto-oncogene serine/threonine-protein kinase Size: 606 amino acids; 67585 Da
Cofactor: Binds 2 zinc ions per subunit (By similarity)
Subunit: Interacts with TH1L/NELFD
PDB structures from and Proteopedia :1WXM (3D)
 
Secondary accessions: P07557 Q5H9B3Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_001645.1
ENSEMBL proteins: ENSP00000366238 ENSP00000366244 ENSP00000290277
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: ARAF 
1 Gene Ontology (GO) cellular component term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005575 | cellular_component |
ND | -- | About this table
Antibodies for ARAF: Assays for ARAF: | Protein
Domains/ Families for ARAF(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P10398
ProtoNet protein and cluster: P10398 2 Blocks protein families: IPB002219 Protein kinase C IPB003116 Raf-like Ras-binding
UniProtKB/Swiss-Prot: ARAF_HUMAN, P10398Similarity: Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. RAF subfamilySimilarity: Contains 1 phorbol-ester/DAG-type zinc fingerSimilarity: Contains 1 protein kinase domainSimilarity: Contains 1 RBD (Ras-binding) domain | Gene Function for ARAF
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001654
Applied Biosystems Silencer® siRNAs for ARAF
Sigma-Aldrich siRNA and siRNA Panels for ARAF  Sigma-Aldrich shRNA Panels and shRNA for ARAF  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001654                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001654                                  untagged cDNA clones in CMV expression vector (see all 3): BC009028 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001654
UniProtKB/Swiss-Prot: ARAF_HUMAN, P10398Function: Involved in the transduction of mitogenic signals from the cell membrane to the nucleusCatalytic activity: ATP + a protein = ADP + a phosphoproteinEnzyme Number (IUBMB): EC 2.7.11.1 7 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Araf):
5/9 Gene Ontology (GO) molecular function terms (links to tree view) (see all 9
): About this table | Pathways & Interactions for ARAF
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/7 Sigma-Aldrich "Your Favorite Gene" Pathways for ARAF (Your Favorite Gene powered by Ingenuity) (see all 7
) 
Gene Network CentralTM Interacting Genes and Proteins Network for ARAF 
5/45 Interacting proteins for ARAF (ENSP000002902773 P103981, 2) via UniProtKB, MINT, and/or STRING (see all 45
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006464 | protein modification process |
TAS | 3029685 | | GO:0006468 | protein amino acid phosphorylation |
NAS | -- | | GO:0007242 | intracellular signaling cascade |
IEA | -- | About this table
|
Drugs & Compounds for ARAF(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Compounds for ARAF available from Tocris Bioscience
| Compound | Action |
CAS
number |
|---|
| ZM 336372 | Potent, selective c-Raf inhibitor | [208260-29-1] | | GW 5074 | Potent, selective c-Raf1 kinase inhibitor | [220904-83-6] | | L-779,450 | Potent Raf kinase inhibitor | [303727-31-3] | About this table
10/23 Novoseek chemical compound relationships for ARAF gene (see all 23
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| 6-deoxyerythronolide b |
91.96 |
16 |
15885088 (1), 17328673 (1), 8652546 (1), 11939803 (1) (see all 12) |
| 10-deoxymethynolide |
89.62 |
1 |
11223265 (1) |
| pikromycin |
88.24 |
7 |
10713461 (1), 17565713 (1), 18245260 (1), 18512859 (1) |
| methymycin |
87.45 |
1 |
17565713 (1) |
| narbonolide |
84.67 |
1 |
11223265 (1) |
| n-acetylcysteamine |
83.31 |
1 |
11439032 (1) |
| tetracenomycin |
77.99 |
5 |
15260498 (4) |
| mycolactone |
77.60 |
7 |
18840298 (2), 17031885 (2), 15758215 (1) |
| vibriobactin |
73.26 |
1 |
15366944 (1) |
| chalcone |
64.77 |
5 |
11006298 (1), 11774005 (1), 11732902 (1), 11959984 (1) (see all 5) |
About this table
|
Transcripts for ARAF(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001654
Sigma-Aldrich siRNA and siRNA Panels for ARAF  Sigma-Aldrich shRNA Panels and shRNA for ARAF  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001654 REFSEQ mRNAs for ARAF gene: NM_001654.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001654               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001654                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001654                                  untagged cDNA clones in CMV expression vector (see all 3): BC009028  Additional cDNA sequence: AB158254.1 AF052136.1 AK130043.1 AK297453.1 AK300975.1 AK307747.1 BC002466.2 BC007514.2 BT019864.1 CR605071.1 M13829.1 X04790.1 23 DOTS entries: DT.102836980 DT.100812399 DT.100658177 DT.100812408 DT.448494 DT.121285030 DT.121285068 DT.100812404 DT.100812402 DT.92058039 DT.121285038 DT.97862004 DT.100812395 DT.95108590 DT.121285071 DT.95245717 DT.100812400 DT.121285049 DT.121285078 DT.91640785 DT.91684943 DT.100835282 DT.99996839 24/323 AceView cDNA sequences (see all 323
):X04790 AI700898 N76413 AW674355 CD724043 BM713862 BE383829 BF931458 BQ955304 BF435683 AI422711 BP346188 BM461996 F13363 AI760277 BM906467 BE378713 BU733087 AK130043 AA332774 BQ929597 BC007514 CD359377 CA424869
highest scoring ESTs for ARAF:AA015618 AA114161 AA182638 AA182732 AA236603 AA332774 AA454735 AA477696 AA570700 AA573455 Unigene Cluster for ARAF: V-raf murine sarcoma 3611 viral oncogene homolog Hs.446641 [show with all ESTs]Unigene Representative Sequence: X04790
GeneLoc Exon Structure
5/9 Alternative Splicing Database (ASD) splice patterns (SP) for ARAF (see all 9
)
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2a | · | 2b | ^ | 3 | ^ | 4a | · | 4b | ^ | 5 | ^ | 6a | · | 6b | ^ | 7a | · | 7b | · | 7c | ^ | 8a | · | 8b | ^ | 9a | · | 9b | · | 9c | · | 9d | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | |
| SP1: | |   | |   | |   | |   | - |   | - |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | - |   | - |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | - |   | - |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | - |   | - |   | |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 15 | ^ | 16 | ^ | 17 | ^ | 18 | |
| SP1: | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for ARAF
3 Ensembl transcripts including schematic representations: ENST00000377039
ENST00000377045
ENST00000290277
|
Expression for ARAF
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ARAF expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ARAF
1 / 2 / 3 8 probe-sets matching ARAF gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TGGATTTTGG
SOURCE GeneReport for Unigene cluster: Hs.446641
Expression variation in blood from EXPOLDB for ARAF UniProtKB/Swiss-Prot: ARAF_HUMAN, P10398Tissue specificity: Predominantly in urogenital tissues (By similarity) |
Orthologs for ARAF
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ARAF gene from 5 species
About this table Species with no ortholog for ARAF
ENSEMBL Gene Tree for ARAF | Paralogs for ARAF(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ARAF gene
- RAF12 BRAF2
|
SNPs/Variants for ARAF(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for ARAF (up to first 250kb)
|
Disorders & Mutations for ARAF
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 311010
3 Novoseek disease relationships for ARAF gene
About this table
|
Medical News for ARAF(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ARAF (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/171 PubMed articles for ARAF gene (see all 171
):- The complete sequence and promoter activity of the human A-raf-1 gene (ARAF1). (PubMed id 8020955)1, 3, 4 Lee J.-E.... Rapp U.R. (1994)
- Identification of TH1 as an interaction partner of A-Raf kinase. (PubMed id 11952167)1, 3, 4 Yin X.L.... Gu J.X. (2002)
- A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PubMed id 16964243)3, 4 Beausoleil S.A.... Gygi S.P. (2006)
- Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)3, 4 Olsen J.V....Mann M. (2006)
- The DNA sequence of the human X chromosome. (PubMed id 15772651)3, 4 Ross M.T.... Bentley D.R. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- The complete coding sequence of the human A-raf-1 oncogene and transforming activity of a human A-raf carrying retrovirus. (PubMed id 3029685)3, 4 Beck T.W.... Rapp U.R. (1987)
- Pks, a raf-related sequence in humans. (PubMed id 3529082)3, 4 Mark G.E.... Mountz J.D. (1986)
- Identification of key residues in the A-Raf kinase important for phosphoinositide lipid binding specificity. (PubMed id 15736953)1, 3 Johnson L.M....Anderson D.H. (2005)
- A-Raf associates with and regulates platelet-derived growth factor receptor signalling. (PubMed id 15763428)1, 3 Mahon E.S....Anderson D.H. (2005)
|
Search for ARAF
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ARAF
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ARAF
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ARAF(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for ARAF(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ARAF:

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|
 |  |  |
| Antibodies & Assays for ARAF  |
| | | | Tocris compounds for ARAF |
|
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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