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Aliases for AQP6 Gene

Aliases for AQP6 Gene

  • Aquaporin 6 2 3 5
  • Aquaporin 6, Kidney Specific 2 3
  • Kidney-Specific Aquaporin 3 4
  • AQP2L 3 4
  • AQP-6 3 4
  • HKID 3 4
  • Aquaporin 2-Like, Kidney Specific 3
  • Aquaporin-6, Kidney Specific 3
  • Aquaporin-2-Like 4
  • KID 3

External Ids for AQP6 Gene

Previous HGNC Symbols for AQP6 Gene

  • AQP2L

Previous GeneCards Identifiers for AQP6 Gene

  • GC12P050655
  • GC12P050417
  • GC12P050077
  • GC12P048647
  • GC12P047398

Summaries for AQP6 Gene

Entrez Gene Summary for AQP6 Gene

  • The protein encoded by this gene is an aquaporin protein, which functions as a water channel in cells. Aquaporins are a family of small integral membrane proteins related to the major intrinsic protein (MIP or AQP0). This protein is specific for the kidney. This gene and related family members AQP0, AQP2, and AQP5 reside in a cluster on chromosome 12q13. [provided by RefSeq, Jul 2008]

GeneCards Summary for AQP6 Gene

AQP6 (Aquaporin 6) is a Protein Coding gene. Among its related pathways are Nanog in Mammalian ESC Pluripotency and Aquaporin-mediated transport. GO annotations related to this gene include transporter activity and glycerol channel activity. An important paralog of this gene is AQP1.

UniProtKB/Swiss-Prot for AQP6 Gene

  • Forms a water-specific channel that participates in distinct physiological functions such as glomerular filtration, tubular endocytosis and acid-base metabolism.

Tocris Summary for AQP6 Gene

  • Aquaporins (AQPs) are integral membrane proteins that facilitate the transport of water across biological membranes along an osmotic gradient. There have been 13 AQP isoforms (AQP0-AQP12) identified in humans and rodents to date.

No data available for Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AQP6 Gene

Genomics for AQP6 Gene

Regulatory Elements for AQP6 Gene

Enhancers for AQP6 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around AQP6 on UCSC Golden Path with GeneCards custom track

Promoters for AQP6 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around AQP6 on UCSC Golden Path with GeneCards custom track

Genomic Location for AQP6 Gene

Chromosome:
12
Start:
49,967,194 bp from pter
End:
49,977,139 bp from pter
Size:
9,946 bases
Orientation:
Plus strand

Genomic View for AQP6 Gene

Genes around AQP6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AQP6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AQP6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AQP6 Gene

Proteins for AQP6 Gene

  • Protein details for AQP6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q13520-AQP6_HUMAN
    Recommended name:
    Aquaporin-6
    Protein Accession:
    Q13520

    Protein attributes for AQP6 Gene

    Size:
    282 amino acids
    Molecular mass:
    29370 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for AQP6 Gene

neXtProt entry for AQP6 Gene

Proteomics data for AQP6 Gene at MOPED

Post-translational modifications for AQP6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for AQP6 Gene

No data available for DME Specific Peptides for AQP6 Gene

Domains & Families for AQP6 Gene

Gene Families for AQP6 Gene

HGNC:
IUPHAR :

Protein Domains for AQP6 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for AQP6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q13520

UniProtKB/Swiss-Prot:

AQP6_HUMAN :
  • Aquaporins contain two tandem repeats each containing three membrane-spanning domains and a pore-forming loop with the signature motif Asn-Pro-Ala (NPA).
  • Belongs to the MIP/aquaporin (TC 1.A.8) family.
Domain:
  • Aquaporins contain two tandem repeats each containing three membrane-spanning domains and a pore-forming loop with the signature motif Asn-Pro-Ala (NPA).
Family:
  • Belongs to the MIP/aquaporin (TC 1.A.8) family.
genes like me logo Genes that share domains with AQP6: view

Function for AQP6 Gene

Molecular function for AQP6 Gene

GENATLAS Biochemistry:
aquaporin 2-like,water channel forming integral protein,exclusively localized in intracellular membranes in renal epithelial,located in intracellular membrane vesicles in glomeruli,in subapical compartment of segments 2 and 3 cells and in collecting ducts,potentially involved in glomerular filtration,tubular endocytosis and acid-base metabolism
UniProtKB/Swiss-Prot Function:
Forms a water-specific channel that participates in distinct physiological functions such as glomerular filtration, tubular endocytosis and acid-base metabolism.

Gene Ontology (GO) - Molecular Function for AQP6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0015254 glycerol channel activity IBA --
genes like me logo Genes that share ontologies with AQP6: view

Phenotypes for AQP6 Gene

genes like me logo Genes that share phenotypes with AQP6: view

Animal Models for AQP6 Gene

MGI Knock Outs for AQP6:

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for AQP6 Gene

Localization for AQP6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for AQP6 Gene

Cytoplasmic vesicle membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for AQP6 Gene COMPARTMENTS Subcellular localization image for AQP6 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for AQP6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0030658 transport vesicle membrane TAS --
genes like me logo Genes that share ontologies with AQP6: view

Pathways & Interactions for AQP6 Gene

genes like me logo Genes that share pathways with AQP6: view

Pathways by source for AQP6 Gene

Interacting Proteins for AQP6 Gene

Gene Ontology (GO) - Biological Process for AQP6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0015706 nitrate transport IEA --
GO:0015793 glycerol transport IBA --
GO:0055085 transmembrane transport TAS --
GO:0098656 anion transmembrane transport EXP 8812490
genes like me logo Genes that share ontologies with AQP6: view

No data available for SIGNOR curated interactions for AQP6 Gene

Drugs & Compounds for AQP6 Gene

(2) Drugs for AQP6 Gene - From: DGIdb, IUPHAR, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Hg<sup>2+</sup> Pharma Inhibitor 0
genes like me logo Genes that share compounds with AQP6: view

Transcripts for AQP6 Gene

mRNA/cDNA for AQP6 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AQP6 Gene

Aquaporin 6, kidney specific:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for AQP6 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b
SP1: - -
SP2: - -
SP3:

Relevant External Links for AQP6 Gene

GeneLoc Exon Structure for
AQP6
ECgene alternative splicing isoforms for
AQP6

Expression for AQP6 Gene

mRNA expression in normal human tissues for AQP6 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for AQP6 Gene

This gene is overexpressed in Kidney - Cortex (x40.3).

Protein differential expression in normal tissues from HIPED for AQP6 Gene

This gene is overexpressed in Stomach (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for AQP6 Gene



SOURCE GeneReport for Unigene cluster for AQP6 Gene Hs.54505

genes like me logo Genes that share expression patterns with AQP6: view

Protein tissue co-expression partners for AQP6 Gene

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for AQP6 Gene

Orthologs for AQP6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for AQP6 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia AQP6 35
  • 81.59 (n)
  • 78.7 (a)
AQP6 36
  • 78 (a)
OneToOne
dog
(Canis familiaris)
Mammalia AQP6 35
  • 84.27 (n)
  • 80.9 (a)
AQP6 36
  • 79 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Aqp6 35
  • 80.34 (n)
  • 77.66 (a)
Aqp6 16
Aqp6 36
  • 73 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia AQP6 35
  • 99.41 (n)
  • 98.94 (a)
AQP6 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Aqp6 35
  • 80.24 (n)
  • 77.82 (a)
lizard
(Anolis carolinensis)
Reptilia AQP6 36
  • 59 (a)
OneToOne
Species with no ortholog for AQP6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for AQP6 Gene

ENSEMBL:
Gene Tree for AQP6 (if available)
TreeFam:
Gene Tree for AQP6 (if available)

Paralogs for AQP6 Gene

Paralogs for AQP6 Gene

(7) SIMAP similar genes for AQP6 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with AQP6: view

Variants for AQP6 Gene

Sequence variations from dbSNP and Humsavar for AQP6 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs17124220 - 49,975,522(+) ACTTC(A/C/G)TCCTG reference, missense
rs296748 -- 49,974,230(+) CCCCC(C/T)TCCAG intron-variant
rs296749 -- 49,976,180(+) GGGGG(C/G)TATAT utr-variant-3-prime
rs17124219 -- 49,974,957(+) TCTTT(C/T)CGGCT intron-variant
rs80087859 -- 49,974,936(+) TGTCT(C/T)GGCTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for AQP6 Gene

Variant ID Type Subtype PubMed ID
nsv522972 CNV Gain 19592680
nsv832407 CNV Loss 17160897
nsv899072 CNV Loss 21882294

Variation tolerance for AQP6 Gene

Residual Variation Intolerance Score: 78% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.70; 73.10% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for AQP6 Gene

HapMap Linkage Disequilibrium report
AQP6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for AQP6 Gene

Disorders for AQP6 Gene

Relevant External Links for AQP6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AQP6

No disorders were found for AQP6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AQP6 Gene

Publications for AQP6 Gene

  1. cDNA cloning and gene structure of a novel water channel expressed exclusively in human kidney: evidence for a gene cluster of aquaporins at chromosome locus 12q13. (PMID: 8812490) Ma T. … Verkman A.S. (Genomics 1996) 2 3 4 23 67
  2. Characterization of aquaporin-6 as a nitrate channel in mammalian cells. Requirement of pore-lining residue threonine 63. (PMID: 12177001) Ikeda M. … Yasui M. (J. Biol. Chem. 2002) 3 23
  3. Closely spaced tandem arrangement of AQP2, AQP5, and AQP6 genes in a 27-kilobase segment at chromosome locus 12q13. (PMID: 9268644) Ma T. … Verkman A.S. (Genomics 1997) 3 23
  4. Immunohistochemical localization and mRNA expression of aquaporins in the macula utriculi of patients with Meniere's disease and acoustic neuroma. (PMID: 20461409) Ishiyama G. … Ishiyama A. (Cell Tissue Res. 2010) 3
  5. Gene expression profiling of chromophobe renal cell carcinomas and renal oncocytomas by Affymetrix GeneChip using pooled and individual tumours. (PMID: 19680475) Yusenko M.V. … Kovacs G. (Int. J. Biol. Sci. 2009) 3

Products for AQP6 Gene

Sources for AQP6 Gene

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