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Aliases for AQP4-AS1 Gene

Subcategory (RNA class) for AQP4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for AQP4-AS1 Gene

  • AQP4 Antisense RNA 1 2 3 5
  • CHST9 Antisense RNA 1 (Non-Protein Coding) 3
  • Chromosome 18 Open Reading Frame 16 2
  • CHST9 Antisense RNA 1 2
  • CHST9-AS1 3
  • C18orf16 3

External Ids for AQP4-AS1 Gene

Previous HGNC Symbols for AQP4-AS1 Gene

  • C18orf16
  • CHST9-AS1

Previous GeneCards Identifiers for AQP4-AS1 Gene

  • GC18P024235

Summaries for AQP4-AS1 Gene

GeneCards Summary for AQP4-AS1 Gene

AQP4-AS1 (AQP4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AQP4-AS1 Gene

Genomics for AQP4-AS1 Gene

Regulatory Elements for AQP4-AS1 Gene

Enhancers for AQP4-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18F026708 1.4 FANTOM5 Ensembl ENCODE 6.8 +54.2 54228 2.7 PKNOX1 TBL1XR1 WRNIP1 MAX BMI1 ZNF316 NFYB EED CREM MAFK PCAT18 AQP4-AS1 TAF4B GC18P026799
GH18F026744 1 Ensembl ENCODE 5 +90.9 90917 3.5 MAX RAD21 ZNF664 CTBP1 POLR2A ZNF366 PRDM10 RCOR1 FOS CEBPB PCAT18 KCTD1 AQP4-AS1 GC18P026799
GH18F026927 0.2 ENCODE 11.7 +272.2 272230 0.3 AQP4-AS1 GC18P026935 GC18M026877
GH18F026706 0.5 Ensembl ENCODE 4.4 +51.4 51415 1.3 KCTD1 AQP4-AS1 PCAT18 GC18P026799
GH18F026655 0.8 ENCODE 0.8 +1.1 1118 2.6 ZNF76 SIN3A ZNF48 SP3 ZEB2 ZNF843 ZNF341 PRDM1 ZBTB26 CTCF PCAT18 AQP4-AS1 KCTD1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AQP4-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for AQP4-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000523751 1158 2201 ZNF76 SIN3A ZNF48 RAD21 SP3 ZEB2 ZNF843 ZNF341 PRDM1 ZBTB26

Genomic Location for AQP4-AS1 Gene

Chromosome:
18
Start:
26,655,742 bp from pter
End:
27,190,698 bp from pter
Size:
534,957 bases
Orientation:
Plus strand

Genomic View for AQP4-AS1 Gene

Genes around AQP4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AQP4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AQP4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AQP4-AS1 Gene

Proteins for AQP4-AS1 Gene

Post-translational modifications for AQP4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AQP4-AS1 Gene

Domains & Families for AQP4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AQP4-AS1 Gene

Function for AQP4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AQP4-AS1 Gene

Localization for AQP4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AQP4-AS1 Gene

Pathways & Interactions for AQP4-AS1 Gene

SuperPathways for AQP4-AS1 Gene

No Data Available

Interacting Proteins for AQP4-AS1 Gene

Gene Ontology (GO) - Biological Process for AQP4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AQP4-AS1 Gene

Transcripts for AQP4-AS1 Gene

mRNA/cDNA for AQP4-AS1 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AQP4-AS1 Gene

AQP4 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for AQP4-AS1 Gene

No ASD Table

Relevant External Links for AQP4-AS1 Gene

GeneLoc Exon Structure for
AQP4-AS1
ECgene alternative splicing isoforms for
AQP4-AS1

Expression for AQP4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for AQP4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for AQP4-AS1 Gene

This gene is overexpressed in Brain - Hippocampus (x6.2), Brain - Caudate (basal ganglia) (x6.1), Brain - Amygdala (x5.5), Brain - Putamen (basal ganglia) (x4.4), and Brain - Nucleus accumbens (basal ganglia) (x4.2).

SOURCE GeneReport for Unigene cluster for AQP4-AS1 Gene:

Hs.559280
genes like me logo Genes that share expression patterns with AQP4-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for AQP4-AS1 Gene

Orthologs for AQP4-AS1 Gene

Evolution for AQP4-AS1 Gene

ENSEMBL:
Gene Tree for AQP4-AS1 (if available)
TreeFam:
Gene Tree for AQP4-AS1 (if available)

No data available for Orthologs for AQP4-AS1 Gene

Paralogs for AQP4-AS1 Gene

No data available for Paralogs for AQP4-AS1 Gene

Variants for AQP4-AS1 Gene

Sequence variations from dbSNP and Humsavar for AQP4-AS1 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs10153327 -- 26,892,669(+) TAAAG(A/T)TGAGT intron-variant
rs1030198 -- 26,899,996(+) GGAAG(C/T)GAATT intron-variant
rs10502478 -- 26,874,616(+) TTTTA(A/C)CAAAC intron-variant
rs10502479 -- 26,909,258(+) GTGAC(A/C)GAATG intron-variant, utr-variant-3-prime
rs10502480 -- 26,936,250(+) GATGA(C/T)TACTC intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for AQP4-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2761995 CNV loss 21179565
esv3893079 CNV gain 25118596
nsv1140315 OTHER inversion 24896259
nsv527852 CNV loss 19592680
nsv833600 CNV gain 17160897
nsv961040 CNV duplication 23825009
nsv962502 CNV duplication 23825009

Relevant External Links for AQP4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AQP4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AQP4-AS1 Gene

Disorders for AQP4-AS1 Gene

Relevant External Links for AQP4-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AQP4-AS1

No disorders were found for AQP4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AQP4-AS1 Gene

Publications for AQP4-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for AQP4-AS1 Gene

Sources for AQP4-AS1 Gene

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