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Aliases for AQP4-AS1 Gene

Subcategory (RNA class) for AQP4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for AQP4-AS1 Gene

  • AQP4 Antisense RNA 1 2 3 5
  • CHST9 Antisense RNA 1 (Non-Protein Coding) 3
  • Chromosome 18 Open Reading Frame 16 2
  • CHST9 Antisense RNA 1 2
  • CHST9-AS1 3
  • C18orf16 3

External Ids for AQP4-AS1 Gene

Previous HGNC Symbols for AQP4-AS1 Gene

  • C18orf16
  • CHST9-AS1

Previous GeneCards Identifiers for AQP4-AS1 Gene

  • GC18P024235

Summaries for AQP4-AS1 Gene

GeneCards Summary for AQP4-AS1 Gene

AQP4-AS1 (AQP4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AQP4-AS1 Gene

Genomics for AQP4-AS1 Gene

Regulatory Elements for AQP4-AS1 Gene

Promoters for AQP4-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around AQP4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for AQP4-AS1 Gene

Chromosome:
18
Start:
26,655,742 bp from pter
End:
27,190,698 bp from pter
Size:
534,957 bases
Orientation:
Plus strand

Genomic View for AQP4-AS1 Gene

Genes around AQP4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AQP4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AQP4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AQP4-AS1 Gene

Proteins for AQP4-AS1 Gene

Post-translational modifications for AQP4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AQP4-AS1 Gene

Domains & Families for AQP4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AQP4-AS1 Gene

Function for AQP4-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AQP4-AS1 Gene

Localization for AQP4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AQP4-AS1 Gene

Pathways & Interactions for AQP4-AS1 Gene

SuperPathways for AQP4-AS1 Gene

No Data Available

Interacting Proteins for AQP4-AS1 Gene

Gene Ontology (GO) - Biological Process for AQP4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AQP4-AS1 Gene

Drugs & Compounds for AQP4-AS1 Gene

No Compound Related Data Available

Transcripts for AQP4-AS1 Gene

mRNA/cDNA for AQP4-AS1 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AQP4-AS1 Gene

AQP4 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for AQP4-AS1 Gene

No ASD Table

Relevant External Links for AQP4-AS1 Gene

GeneLoc Exon Structure for
AQP4-AS1
ECgene alternative splicing isoforms for
AQP4-AS1

Expression for AQP4-AS1 Gene

mRNA expression in normal human tissues for AQP4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for AQP4-AS1 Gene

This gene is overexpressed in Brain - Hippocampus (x6.2), Brain - Caudate (basal ganglia) (x6.1), Brain - Amygdala (x5.5), Brain - Putamen (basal ganglia) (x4.4), and Brain - Nucleus accumbens (basal ganglia) (x4.2).

SOURCE GeneReport for Unigene cluster for AQP4-AS1 Gene Hs.559280

genes like me logo Genes that share expression patterns with AQP4-AS1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for AQP4-AS1 Gene

Orthologs for AQP4-AS1 Gene

Evolution for AQP4-AS1 Gene

ENSEMBL:
Gene Tree for AQP4-AS1 (if available)
TreeFam:
Gene Tree for AQP4-AS1 (if available)

No data available for Orthologs for AQP4-AS1 Gene

Paralogs for AQP4-AS1 Gene

No data available for Paralogs for AQP4-AS1 Gene

Variants for AQP4-AS1 Gene

Sequence variations from dbSNP and Humsavar for AQP4-AS1 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs151170 -- 26,906,657(+) cggaa(C/T)tcaaa intron-variant
rs161999 -- 26,879,974(+) ATGCT(A/G)TGGAA intron-variant
rs162000 -- 26,872,471(+) GATGG(A/C)CTTCC intron-variant
rs162001 -- 26,871,481(-) cactg(G/T)cattc intron-variant
rs162002 -- 26,871,015(+) GCCAT(A/G)CTCCT intron-variant

Relevant External Links for AQP4-AS1 Gene

HapMap Linkage Disequilibrium report
AQP4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for AQP4-AS1 Gene

Disorders for AQP4-AS1 Gene

Relevant External Links for AQP4-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AQP4-AS1

No disorders were found for AQP4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AQP4-AS1 Gene

Publications for AQP4-AS1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 67
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for AQP4-AS1 Gene

Sources for AQP4-AS1 Gene

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