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Aliases for AQP4-AS1 Gene

Subcategory (RNA class) for AQP4-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for AQP4-AS1 Gene

  • AQP4 Antisense RNA 1 2 3
  • CHST9 Antisense RNA 1 (Non-Protein Coding) 3
  • Chromosome 18 Open Reading Frame 16 2
  • CHST9 Antisense RNA 1 2
  • CHST9-AS1 3
  • C18orf16 3

External Ids for AQP4-AS1 Gene

ORGUL Members for AQP4-AS1 Gene

Previous HGNC Symbols for AQP4-AS1 Gene

  • C18orf16
  • CHST9-AS1

Previous GeneCards Identifiers for AQP4-AS1 Gene

  • GC18P024235

Summaries for AQP4-AS1 Gene

GeneCards Summary for AQP4-AS1 Gene

AQP4-AS1 (AQP4 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AQP4-AS1 Gene

Genomics for AQP4-AS1 Gene

Genomic Location for AQP4-AS1 Gene

Start:
26,655,742 bp from pter
End:
27,190,698 bp from pter
Size:
534,957 bases
Orientation:
Plus strand

Genomic View for AQP4-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for AQP4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AQP4-AS1 Gene

No data available for Regulatory Elements for AQP4-AS1 Gene

Proteins for AQP4-AS1 Gene

Post-translational modifications for AQP4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AQP4-AS1 Gene

Domains for AQP4-AS1 Gene

Gene Families for AQP4-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with AQP4-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AQP4-AS1 Gene

Function for AQP4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for AQP4-AS1 Gene

Localization for AQP4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AQP4-AS1 Gene

Pathways for AQP4-AS1 Gene

SuperPathways for AQP4-AS1 Gene

No Data Available

Interacting Proteins for AQP4-AS1 Gene

Gene Ontology (GO) - Biological Process for AQP4-AS1 Gene

None

No data available for Pathways by source for AQP4-AS1 Gene

Transcripts for AQP4-AS1 Gene

mRNA/cDNA for AQP4-AS1 Gene

(5) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(2) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AQP4-AS1 Gene

AQP4 antisense RNA 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for AQP4-AS1

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for AQP4-AS1
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for AQP4-AS1 Gene

No ASD Table

Relevant External Links for AQP4-AS1 Gene

GeneLoc Exon Structure for
AQP4-AS1
ECgene alternative splicing isoforms for
AQP4-AS1

Expression for AQP4-AS1 Gene

mRNA expression in normal human tissues for AQP4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for AQP4-AS1 Gene

This gene is overexpressed in Brain - Hippocampus (6.2), Brain - Caudate (basal ganglia) (6.1), Brain - Amygdala (5.5), Brain - Putamen (basal ganglia) (4.4), and Brain - Nucleus accumbens (basal ganglia) (4.2).

SOURCE GeneReport for Unigene cluster for AQP4-AS1 Gene Hs.559280

genes like me logo Genes that share expressions with AQP4-AS1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for AQP4-AS1 Gene

Orthologs for AQP4-AS1 Gene

Evolution for AQP4-AS1 Gene

ENSEMBL:
Gene Tree for AQP4-AS1 (if available)
TreeFam:
Gene Tree for AQP4-AS1 (if available)

No data available for Orthologs for AQP4-AS1 Gene

Paralogs for AQP4-AS1 Gene

No data available for Paralogs for AQP4-AS1 Gene

Variants for AQP4-AS1 Gene

Sequence variations from dbSNP and Humsavar for AQP4-AS1 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type MAF
rs151170 -- 26,906,657(+) cggaa(C/T)tcaaa intron-variant
rs151245 -- 26,869,085(+) GTTTG(G/T)TGTAG intron-variant
rs151246 -- 26,869,139(+) TGGGG(G/T)AGTTG intron-variant
rs151251 -- 26,906,618(-) ctgaa(A/G)ttgct intron-variant
rs161999 -- 26,879,974(+) ATGCT(A/G)TGGAA intron-variant

Relevant External Links for AQP4-AS1 Gene

HapMap Linkage Disequilibrium report
AQP4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for AQP4-AS1 Gene

Disorders for AQP4-AS1 Gene

No disorders were found for AQP4-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for AQP4-AS1 Gene

Publications for AQP4-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3

Products for AQP4-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate AQP4-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for AQP4-AS1
    • Block miRNA regulation of AQP4-AS1 using miScript Target Protectors

    Sources for AQP4-AS1 Gene

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