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Aliases for APTR Gene

Subcategory (RNA class) for APTR Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for APTR Gene

  • Alu-Mediated CDKN1A/P21 Transcriptional Regulator (Non-Protein Coding) 2 3 5
  • RSBN1L Antisense RNA 1 (Non-Protein Coding) 2 3
  • RSBN1L-AS1 3

External Ids for APTR Gene

Previous HGNC Symbols for APTR Gene

  • RSBN1L-AS1

Summaries for APTR Gene

GeneCards Summary for APTR Gene

APTR (Alu-Mediated CDKN1A/P21 Transcriptional Regulator (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for APTR Gene

Genomics for APTR Gene

Regulatory Elements for APTR Gene

Enhancers for APTR Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F077719 0.9 Ensembl ENCODE 51.5 -23.3 -23256 1.6 ZNF362 ZNF146 RAD21 OSR2 ZFHX2 GLIS1 PRDM10 ZNF600 PRDM1 SP7 APTR PTPN12 RSBN1L PHTF2 TMEM60
GH07F077722 0.5 Ensembl 51.4 -25.1 -25056 0.4 HDGF USF1 BMI1 ZIC2 POLR2A EED ZNF143 ETV6 CREM STAT1 APTR RSBN1L PHTF2 TMEM60 PTPN12
GH07F077683 1.1 Ensembl ENCODE 40.9 +12.2 12183 2.5 CTCF HLF TEAD4 INSM2 MAX MNT YY1 OSR2 ZBTB48 SCRT2 APTR PTPN12 TMEM60 PHTF2 RSBN1L GC07P077654
GH07F077752 1 Ensembl ENCODE 39.7 -55.3 -55272 1.2 NR2F1 MAX CEBPB REST JUND KLF16 GATA2 HMBOX1 NR2F6 CREM APTR TMEM60
GH07F077726 1.3 Ensembl ENCODE 38.5 -31.2 -31156 3.8 PKNOX1 TAL1 SIN3A ZNF121 GATA3 FOXK2 NCOR1 NFE2 RFX1 ZNF362 APTR PTPN12 TMEM60
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around APTR on UCSC Golden Path with GeneCards custom track

Promoters for APTR Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for APTR Gene

77,657,660 bp from pter
77,697,345 bp from pter
39,686 bases
Minus strand

Genomic View for APTR Gene

Genes around APTR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
APTR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APTR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APTR Gene

Proteins for APTR Gene

Post-translational modifications for APTR Gene

No Post-translational modifications

No data available for DME Specific Peptides for APTR Gene

Domains & Families for APTR Gene

Gene Families for APTR Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with APTR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for APTR Gene

Function for APTR Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APTR Gene

Localization for APTR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for APTR Gene

Pathways & Interactions for APTR Gene

SuperPathways for APTR Gene

No Data Available

Interacting Proteins for APTR Gene

Gene Ontology (GO) - Biological Process for APTR Gene


No data available for Pathways by source and SIGNOR curated interactions for APTR Gene

Transcripts for APTR Gene

mRNA/cDNA for APTR Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for APTR Gene

No ASD Table

Relevant External Links for APTR Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for APTR Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for APTR Gene

NURSA nuclear receptor signaling pathways regulating expression of APTR Gene:

genes like me logo Genes that share expression patterns with APTR: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for APTR Gene

Orthologs for APTR Gene

Evolution for APTR Gene

Gene Tree for APTR (if available)
Gene Tree for APTR (if available)

No data available for Orthologs for APTR Gene

Paralogs for APTR Gene

No data available for Paralogs for APTR Gene

Variants for APTR Gene

Sequence variations from dbSNP and Humsavar for APTR Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10216002 -- 77,699,012(+) TAACA(A/C)GTGGT intron-variant, upstream-variant-2KB
rs10234882 -- 77,671,502(+) GGGAA(A/G)AACCA intron-variant
rs10235156 -- 77,671,718(+) ttgta(A/G)agaca intron-variant
rs10251507 -- 77,658,470(+) TTTAA(C/T)GTCAT intron-variant, nc-transcript-variant
rs10260269 -- 77,667,060(+) TATAT(A/T)TTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for APTR Gene

Variant ID Type Subtype PubMed ID
esv2657737 CNV deletion 23128226
esv2661869 CNV deletion 23128226
esv2675970 CNV deletion 23128226
esv2734703 CNV deletion 23290073
esv3613804 CNV loss 21293372
esv3613805 CNV loss 21293372
esv3613806 CNV loss 21293372
nsv1114979 CNV deletion 24896259
nsv831039 CNV gain 17160897

Relevant External Links for APTR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for APTR Gene

Disorders for APTR Gene

Relevant External Links for APTR

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for APTR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for APTR Gene

Publications for APTR Gene

  1. A new lncRNA, APTR, associates with and represses the CDKN1A/p21 promoter by recruiting polycomb proteins. (PMID: 24748121) Negishi M. … Dutta A. (PLoS ONE 2014) 2 3 64

Products for APTR Gene

Sources for APTR Gene

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