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Aliases for APTR Gene

Subcategory (RNA class) for APTR Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for APTR Gene

  • Alu-Mediated CDKN1A/P21 Transcriptional Regulator (Non-Protein Coding) 2 3 5
  • RSBN1L Antisense RNA 1 (Non-Protein Coding) 2 3
  • RSBN1L-AS1 3

External Ids for APTR Gene

Previous HGNC Symbols for APTR Gene

  • RSBN1L-AS1

Summaries for APTR Gene

GeneCards Summary for APTR Gene

APTR (Alu-Mediated CDKN1A/P21 Transcriptional Regulator (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for APTR Gene

Genomics for APTR Gene

Regulatory Elements for APTR Gene

Promoters for APTR Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around APTR on UCSC Golden Path with GeneCards custom track

Genomic Location for APTR Gene

Chromosome:
7
Start:
77,657,660 bp from pter
End:
77,697,345 bp from pter
Size:
39,686 bases
Orientation:
Minus strand

Genomic View for APTR Gene

Genes around APTR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
APTR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APTR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APTR Gene

Proteins for APTR Gene

Post-translational modifications for APTR Gene

No Post-translational modifications

No data available for DME Specific Peptides for APTR Gene

Domains & Families for APTR Gene

Gene Families for APTR Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with APTR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for APTR Gene

Function for APTR Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APTR Gene

Localization for APTR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for APTR Gene

Pathways & Interactions for APTR Gene

SuperPathways for APTR Gene

No Data Available

Interacting Proteins for APTR Gene

Gene Ontology (GO) - Biological Process for APTR Gene

None

No data available for Pathways by source and SIGNOR curated interactions for APTR Gene

Drugs & Compounds for APTR Gene

No Compound Related Data Available

Transcripts for APTR Gene

mRNA/cDNA for APTR Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for APTR Gene

No ASD Table

Relevant External Links for APTR Gene

GeneLoc Exon Structure for
APTR
ECgene alternative splicing isoforms for
APTR

Expression for APTR Gene

mRNA expression in normal human tissues for APTR Gene

genes like me logo Genes that share expression patterns with APTR: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for APTR Gene

Orthologs for APTR Gene

Evolution for APTR Gene

ENSEMBL:
Gene Tree for APTR (if available)
TreeFam:
Gene Tree for APTR (if available)

No data available for Orthologs for APTR Gene

Paralogs for APTR Gene

No data available for Paralogs for APTR Gene

Variants for APTR Gene

Sequence variations from dbSNP and Humsavar for APTR Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs4727461 -- 77,691,071(+) ccaga(A/G)gggtt intron-variant
rs7810273 -- 77,685,327(+) GTGAA(A/G)CCTGT nc-transcript-variant
rs11489585 -- 77,685,535(+) CCACA(A/G)TGAAC intron-variant
rs11489586 -- 77,685,900(+) ATGCT(A/C)TCCCT intron-variant
rs11300431 -- 77,688,782(+) TTAAC(-/A)AAAAA intron-variant

Relevant External Links for APTR Gene

HapMap Linkage Disequilibrium report
APTR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for APTR Gene

Disorders for APTR Gene

Relevant External Links for APTR

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
APTR

No disorders were found for APTR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for APTR Gene

Publications for APTR Gene

  1. A new lncRNA, APTR, associates with and represses the CDKN1A/p21 promoter by recruiting polycomb proteins. (PMID: 24748121) Negishi M. … Dutta A. (PLoS ONE 2014) 2 3 67

Products for APTR Gene

Sources for APTR Gene

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