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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

APOOL Gene

protein-coding   GIFtS: 42
GCID: GC0XP084258

Apolipoprotein O-Like

(Previous names: chromosome X open reading frame 33, family with sequence...)
(Previous symbols: CXorf33, FAM121A)
  Search for APOOL
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Apolipoprotein O-Like1 2     Chromosome X Open Reading Frame 331
CXorf331 2 3     AAIR81932
FAM121A1 2 3     UNQ81932
Family With Sequence Similarity 121A1 2     Protein FAM121A3

External Ids:    HGNC: 240091   Entrez Gene: 1393222   Ensembl: ENSG000001550087   UniProtKB: Q6UXV43   

Export aliases for APOOL gene to outside databases

Previous GC identifers: GC0XP084146 GC0XP077832


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for APOOL Gene:
This gene encodes a protein which contains an apolipoprotein O superfamily domain. This domain is found on
proteins in circulating lipoprotein complexes. (provided by RefSeq, Sep 2011)

GeneCards Summary for APOOL Gene: 
APOOL (apolipoprotein O-like) is a protein-coding gene. An important paralog of this gene is APOO.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000023.10  NT_011651.17  NC_018934.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the APOOL gene promoter:
         Spz1   AML1a   Nkx2-2   POU6F1 (c2)   Evi-1   Nkx6-1   FOXJ2 (long isoform)   FOXJ2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidAPOOL promoter sequence
   Search SABiosciences Chromatin IP Primers for APOOL

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat APOOL


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xq21.1   Ensembl cytogenetic band:  Xq21.1   HGNC cytogenetic band: Xq21.1

APOOL Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
APOOL gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XP084258:  view genomic region     (about GC identifiers)

Start:
84,258,832 bp from pter      End:
84,348,324 bp from pter
Size:
89,493 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: APOOL_HUMAN, Q6UXV4 (See protein sequence)
Recommended Name: Apolipoprotein O-like precursor  
Size: 268 amino acids; 29159 Da
Subcellular location: Secreted (Potential)
Sequence caution: Sequence=CAI42458.1; Type=Erroneous initiation;
Secondary accessions: Q3KNU7 Q5H9D1

Explore the universe of human proteins at neXtProt for APOOL: NX_Q6UXV4

Explore proteomics data for APOOL at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q6UXV4

  • APOOL Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    APOOL Protein Expression
    REFSEQ proteins: NP_940852.3  
    ENSEMBL proteins: 
     ENSP00000362268  

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    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region IEA--
    GO:0005739mitochondrion ----
    GO:0005743mitochondrial inner membrane IEA--

    APOOL for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    1 InterPro protein domain:
     IPR019166 Apolipoprotein_O

    Graphical View of Domain Structure for InterPro Entry Q6UXV4

    ProtoNet protein and cluster: Q6UXV4

    UniProtKB/Swiss-Prot: APOOL_HUMAN, Q6UXV4
    Similarity: Belongs to the apolipoprotein O family


    APOOL for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Phenotypes:
         1 GenomeRNAi human phenotype for APOOL:
     Increased HPV18 LCR reporter a 

         1 MGI mutant phenotype (inferred from 1 allele(MGI details for Apool):
     normal 

    APOOL for phenotypes           About GeneDecksing

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for APOOL 
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    SwitchGear 3'UTR luciferase reporter plasmidAPOOL 3' UTR sequence
    Inhib. RNA
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for APOOL

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for APOOL

    Search CenterWatch for drugs/clinical trials and news about APOOL

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for APOOL gene: 
    NM_198450.5  

    Unigene Clusters for APOOL:

    Apolipoprotein O-like
    Hs.512181  [show with all ESTs], Hs.729014  [show with all ESTs]
    Unigene Representative Sequences: NM_198450, AK096909
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000373173(uc004eem.3 uc010nmp.3)
    miRNA
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    8/27 QIAGEN miScript miRNA Assays for microRNAs that regulate APOOL (see all 27):
    hsa-miR-579 hsa-miR-607 hsa-miR-3655 hsa-miR-578 hsa-miR-3684 hsa-miR-4267 hsa-miR-105 hsa-miR-4325
    SwitchGear 3'UTR luciferase reporter plasmidAPOOL 3' UTR sequence
    Inhib. RNA
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    DNA2.0 Custom Codon Optimized Gene Synthesis Service for APOOL
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat APOOL
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    Additional mRNA sequence: AK096909.1 

    8 DOTS entries:

    DT.443086  DT.115509  DT.209001  DT.306813  DT.100752188  DT.92424977  DT.100752187  DT.95295428 

    24/138 AceView cDNA sequences (see all 138):

    Z42285 N45259 AW014559 BE328646 Z38514 AA548107 BM458173 BE042986 
    BF939047 CN478863 AV702015 AI348268 AI342669 BE221922 BQ029895 BX119645 
    CB156080 AI888769 D79911 BG778626 AI041713 AA743654 BF793648 BI038188 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    APOOL expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TAATGGGTAA
    APOOL Expression
    About this image


    See APOOL Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for APOOL

    SOURCE GeneReport for Unigene clusters: Hs.512181 Hs.729014
        SABiosciences Custom PCR Arrays for APOOL
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for APOOL

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for APOOL gene from 5/11 species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Apool1 , 5 apolipoprotein O-like1, 5 82.77(n)1
    77.74(a)1
      X (48.76 cM)5
    681171  NM_026565.21  NP_080841.11 
     1123113345 
    chicken
    (Gallus gallus)
    Aves APOOL1 apolipoprotein O-like 64.33(n)
    57.61(a)
      422271  NM_001006434.1  NP_001006434.1 
    lizard
    (Anolis carolinensis)
    Reptilia APOOL6
    Uncharacterized protein
    45(a)
    1 ↔ 1
    GL343202.1(1075950-1086748)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.247242 Xenopus laevis transcribed sequence with weak similarity more 74.32(n)    BJ096698.1 
    zebrafish
    (Danio rerio)
    Actinopterygii zgc:1108001 zgc:110800 44.44(n)
    34.11(a)
      541537  NM_001014351.1  NP_001014373.1 


    ENSEMBL Gene Tree for APOOL (if available)
    TreeFam Gene Tree for APOOL (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for APOOL gene
    APOO2  
    2 SIMAP similar genes for APOOL using alignment to 1 protein entry:     APOOL_HUMAN:
    DKFZp779P1227    APOO

    APOOL for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for APOOL
    PGOHUM00000235804


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1261 SNPs in APOOL are shown (see all 1261)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr X posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1850845881,2
    --84232181(+) ATTTAC/TTTTGG 1 -- us2k10--------
    rs1895490611,2
    --84232242(+) CTCCAG/TCCTCA 1 -- us2k10--------
    rs1840507211,2
    --84232249(+) CTCACC/TGGACT 1 -- us2k10--------
    rs1890335701,2
    C--84232250(+) TCACTA/GGACTT 1 -- us2k10--------
    rs1929534141,2
    --84232269(+) CTGTTC/TCTTCC 1 -- us2k10--------
    rs591671041,2
    C--84232276(+) TTCCGC/TATGCA 1 -- us2k12Minor allele frequency- T:0.00WA 4
    rs1836110041,2
    C--84232423(+) AAAATC/TTATTA 1 -- us2k10--------
    rs1874087141,2
    --84232497(+) TGCAGA/TGGCGC 1 -- us2k10--------
    rs1918593811,2
    --84232687(+) CCGCCC/TGTCTC 1 -- us2k10--------
    rs1839894211,2
    --84232769(+) ATCATA/TAGCTC 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for APOOL (84258832 - 84348324 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 8 variations for APOOL:    About this table     
    Variant IDTypeSubtypePubMed ID
    esv1768621CNV Deletion17803354
    esv2740269CNV Deletion23290073
    esv1139290CNV Deletion17803354
    esv2740270CNV Deletion23290073
    esv2740267CNV Deletion23290073
    esv2740271CNV Deletion23290073
    esv1925625CNV Deletion18987734
    esv2740268CNV Deletion23290073


    Locus Specific Mutation Databases (LSDB): APOOL
    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing APOOL
    DNA2.0 Custom Variant and Variant Library Synthesis for APOOL

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    APOOL for disorders           About MalaCards

    APOOL for disorders           About GeneDecksing

    Genetic Association Database (GAD): APOOL

    Export disorders for APOOL gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for APOOL gene, integrated from 9 sources (see all 11):
    (articles sorted by number of sources associating them with APOOL)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2, 3 Clark H.F.... Gray A.M. (2003)
    2. The DNA sequence of the human X chromosome. (PubMed id 15772651)1, 2 Ross M.T.... Bentley D.R. (2005)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
    5. Activity-based chemical proteomics accelerates inhibi tor development for deubiquitylating enzymes. (PubMed id 22118674)1 Altun M....Kessler B.M. (2011)
    6. Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)1 Barbe L....Andersson-Svahn H. (2008)
    7. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PubMed id 17903300)4 Fox C.S....Atwood L.D. (2007)
    8. Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study. (PubMed id 17903295)4 Lunetta K.L....Murabito J.M. (2007)
    9. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)
    10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 139322 HGNC: 24009 AceView: CXorf33 Ensembl:ENSG00000155008 euGenes: HUgn139322
    ECgene: APOOL H-InvDB: APOOL

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for APOOL Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for APOOL gene:
    Search GeneIP for patents involving APOOL

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    Category
    (GIFtS: 73)
    transforming growth factor, beta 1
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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