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APOOL Gene

protein-coding   GIFtS: 42
GCID: GC0XP084258

Apolipoprotein O-Like

(Previous names: chromosome X open reading frame 33, family with sequence...)
(Previous symbols: CXorf33, FAM121A)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Apolipoprotein O-Like1 2     Chromosome X Open Reading Frame 331
CXorf331 2 3     AAIR81932
FAM121A1 2 3     UNQ81932
Family With Sequence Similarity 121A1 2     Protein FAM121A3

External Ids:    HGNC: 240091   Entrez Gene: 1393222   Ensembl: ENSG000001550087   UniProtKB: Q6UXV43   

Export aliases for APOOL gene to outside databases

Previous GC identifers: GC0XP084146 GC0XP077832


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for APOOL Gene:
This gene encodes a protein which contains an apolipoprotein O superfamily domain. This domain is found on
proteins in circulating lipoprotein complexes. (provided by RefSeq, Sep 2011)

GeneCards Summary for APOOL Gene:
APOOL (apolipoprotein O-like) is a protein-coding gene. An important paralog of this gene is APOO.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000023.10  NT_011651.18  NC_018934.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the APOOL gene promoter:
         Spz1   AML1a   Nkx2-2   POU6F1 (c2)   Evi-1   Nkx6-1   FOXJ2 (long isoform)   FOXJ2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidAPOOL promoter sequence
   Search Chromatin IP Primers for APOOL

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat APOOL


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xq21.1   Ensembl cytogenetic band:  Xq21.1   HGNC cytogenetic band: Xq21.1

APOOL Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
APOOL gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XP084258:  view genomic region     (about GC identifiers)

Start:
84,258,832 bp from pter      End:
84,348,324 bp from pter
Size:
89,493 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: APOOL_HUMAN, Q6UXV4 (See protein sequence)
Recommended Name: Apolipoprotein O-like precursor  
Size: 268 amino acids; 29159 Da
Sequence caution: Sequence=CAI42458.1; Type=Erroneous initiation;
Secondary accessions: Q3KNU7 Q5H9D1

Explore the universe of human proteins at neXtProt for APOOL: NX_Q6UXV4

Explore proteomics data for APOOL at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See APOOL Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_940852.3  
    ENSEMBL proteins: 
     ENSP00000362268  

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    antibodies-online proteins for APOOL (2 products) 

     
    antibodies-online peptides for APOOL

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR019166 Apolipoprotein_O

    Graphical View of Domain Structure for InterPro Entry Q6UXV4

    ProtoNet protein and cluster: Q6UXV4

    UniProtKB/Swiss-Prot: APOOL_HUMAN, Q6UXV4
    Similarity: Belongs to the apolipoprotein O family


    Find genes that share domains with APOOL           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Phenotypes:
         1 GenomeRNAi human phenotype for APOOL:
     Increased HPV18 LCR reporter a 

         1 MGI mutant phenotype (inferred from 1 allele(MGI details for Apool):
     normal 

    Find genes that share phenotypes with APOOL           About GenesLikeMe

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for APOOL

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    hsa-miR-579 hsa-miR-607 hsa-miR-3655 hsa-miR-578 hsa-miR-3684 hsa-miR-4267 hsa-miR-105 hsa-miR-4325
    SwitchGear 3'UTR luciferase reporter plasmidAPOOL 3' UTR sequence
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    APOOL_HUMAN, Q6UXV4: Secreted (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    extracellular3
    mitochondrion2
    cytosol1
    nucleus1
    peroxisome1

    Gene Ontology (GO): 3 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region IEA--
    GO:0005739mitochondrion ----
    GO:0005743mitochondrial inner membrane IEA--

    Find genes that share ontologies with APOOL           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for APOOL
    Interactions:

        Search GeneGlobe Interaction Network for APOOL

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for APOOL



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for APOOL gene: 
    NM_198450.5  

    Unigene Cluster for APOOL:

    Apolipoprotein O-like
    Hs.512181  [show with all ESTs]
    Unigene Representative Sequence: NM_198450
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000373173(uc004eem.3 uc010nmp.3)
    miRNA
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    hsa-miR-579 hsa-miR-607 hsa-miR-3655 hsa-miR-578 hsa-miR-3684 hsa-miR-4267 hsa-miR-105 hsa-miR-4325
    SwitchGear 3'UTR luciferase reporter plasmidAPOOL 3' UTR sequence
    Inhib. RNA
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      QuantiFast Probe-based Assays in human, mouse, rat APOOL

    Additional mRNA sequence: 

    AK130506.1 AY358193.1 BC107095.1 BC107096.1 CR749250.1 

    4 DOTS entries:

    DT.209001  DT.115509  DT.306813  DT.443086 

    Selected AceView cDNA sequences (see all 138):

    AW471290 BE328646 AI679354 AV702015 D79911 BF446416 AY358193 BQ029895 
    F11923 BF939047 CB156080 AI270286 NM_198450 AI348268 CA455099 BX119645 
    Z38514 AA291135 BI038188 BF793648 Z42285 AI342669 AA743654 CN478863 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    APOOL expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TAATGGGTAA
    APOOL Expression
    About this image

    APOOL Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    APOOL Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.512181
        Custom PCR Arrays for APOOL
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for APOOL

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for APOOL gene from Selected species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Apool1 , 5 apolipoprotein O-like1, 5 83.27(n)1
    77.74(a)1
      X (48.76 cM)5
    681171  NM_026565.21  NP_080841.11 
     1123113345 
    chicken
    (Gallus gallus)
    Aves APOOL1 apolipoprotein O-like 64.75(n)
    56.32(a)
      422271  NM_001006434.2  NP_001006434.1 
    lizard
    (Anolis carolinensis)
    Reptilia APOOL6
    apolipoprotein O-like
    47(a)
    1 ↔ 1
    GL343202.1(1075950-1086748)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.247242 Xenopus laevis transcribed sequence with weak similarity more 74.32(n)    BJ096698.1 
    zebrafish
    (Danio rerio)
    Actinopterygii zgc:1108001 zgc:110800 53.01(n)
    45.85(a)
      541537  NM_001014351.1  NP_001014373.1 


    ENSEMBL Gene Tree for APOOL (if available)
    TreeFam Gene Tree for APOOL (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for APOOL gene
    APOO2  
    2 SIMAP similar genes for APOOL using alignment to 1 protein entry:     APOOL_HUMAN:
    DKFZp779P1227    APOO

    Find genes that share paralogs with APOOL           About GenesLikeMe


    1 Pseudogenes.org Pseudogene for APOOL
    PGOHUM00000235804


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for APOOL (see all 1261)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr X posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1850845881,2
    --84232181(+) ATTTAC/TTTTGG 1 -- us2k10--------
    rs1895490611,2
    --84232242(+) CTCCAG/TCCTCA 1 -- us2k10--------
    rs1840507211,2
    --84232249(+) CTCACC/TGGACT 1 -- us2k10--------
    rs1890335701,2
    C--84232250(+) TCACTA/GGACTT 1 -- us2k10--------
    rs1929534141,2
    --84232269(+) CTGTTC/TCTTCC 1 -- us2k10--------
    rs591671041,2
    C--84232276(+) TTCCGC/TATGCA 1 -- us2k12Minor allele frequency- T:0.00WA 4
    rs1836110041,2
    C--84232423(+) AAAATC/TTATTA 1 -- us2k10--------
    rs1874087141,2
    --84232497(+) TGCAGA/TGGCGC 1 -- us2k10--------
    rs1918593811,2
    --84232687(+) CCGCCC/TGTCTC 1 -- us2k10--------
    rs1839894211,2
    --84232769(+) ATCATA/TAGCTC 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for APOOL (84258832 - 84348324 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 8 variations for APOOL:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv1768621CNV Deletion17803354
    esv2740269CNV Deletion23290073
    esv1139290CNV Deletion17803354
    esv2740270CNV Deletion23290073
    esv2740267CNV Deletion23290073
    esv2740271CNV Deletion23290073
    esv1925625CNV Deletion18987734
    esv2740268CNV Deletion23290073

    Locus Specific Mutation Databases (LSDB): APOOL

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing APOOL
    DNA2.0 Custom Variant and Variant Library Synthesis for APOOL

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    Find genes that share disorders with APOOL           About GenesLikeMe

    Genetic Association Database (GAD): APOOL

    Export disorders for APOOL gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for APOOL gene, integrated from 10 sources (see all 12):
    (articles sorted by number of sources associating them with APOOL)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2, 3 Clark H.F.... Gray A.M. (Genome Res. 2003)
    2. The DNA sequence of the human X chromosome. (PubMed id 15772651)1, 2 Ross M.T.... Bentley D.R. (Nature 2005)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    4. APOOL is a cardiolipin-binding constituent of the Mitofilin/MINOS protein complex determining cristae morphology in mammalian mitochondria. (PubMed id 23704930)1 Weber T.A....Reichert A.S. (PLoS ONE 2013)
    5. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (BMC Syst. Biol. 2011)
    6. Activity-based chemical proteomics accelerates inhibitor development for deubiquitylating enzymes. (PubMed id 22118674)1 Altun M....Kessler B.M. (amp 2011)
    7. Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)1 Barbe L....Andersson-Svahn H. (amp 2008)
    8. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PubMed id 17903300)4 Fox C.S....Atwood L.D. (BMC Med. Genet. 2007)
    9. Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study. (PubMed id 17903295)4 Lunetta K.L....Murabito J.M. (BMC Med. Genet. 2007)
    10. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (Nat. Genet. 2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 139322 HGNC: 24009 AceView: CXorf33 Ensembl:ENSG00000155008 euGenes: HUgn139322
    ECgene: APOOL H-InvDB: APOOL

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for APOOL Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for APOOL gene:
    Search GeneIP for patents involving APOOL

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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     Block miRNA regulation of human, mouse, rat APOOL using miScript Target Protectors SeqTarget long-range PCR primers for resequencing APOOL
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     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies

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     antibodies-online antibodies for APOOL (13 products)
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    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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