APOO Gene
protein-coding GIFtS: 46
GCID: GC0XM023851
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apolipoprotein O(Previous name: family with sequence similarity 121B ) (Previous symbol: FAM121B)
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Aliases for APOO gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb) About This Section
| This gene clusters with an RNA gene Subcategory (RNA class): lncRNA
Quality score for the ORGUL clustered with this gene is 3
| Aliases |
|---|
| Apolipoprotein O1 2 | | My0251 | | FAM121B1 2 3 5 | | Brain My0252 | | Family With Sequence Similarity 121B1 2 | | Protein FAM121B3 | | MGC48251 | | MYO255 |
| External Ids: | HGNC: 287271 | Entrez Gene: 791352 | Ensembl: ENSG000001848317 | OMIM: 3007535 | UniProtKB: Q9BUR53 |
|---|
| | ORGUL members: | |
|---|
| NONCODE:n407133 | |
Export aliases for APOO gene to outside databasesPrevious GC identifers: GC0XM023763 GC0XM021597
Summaries for APOO gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| Entrez Gene summary for APOO: This gene is a member of the apolipoprotein family. Members of this protein family are involved in the transport andmetabolism of lipids. The encoded protein associates with HDL, LDL and VLDL lipoproteins and is characterized bychondroitin-sulfate glycosylation. This protein may be involved in preventing lipid accumulation in the myocardium inobese and diabetic patients. Alternative splicing results in multiple transcript variants. Pseudogenes of this geneare found on chromosomes 3, 4, 5, 12 and 16.(provided by RefSeq, Sep 2009) UniProtKB/Swiss-Prot: APOO_HUMAN, Q9BUR5Function: Promotes cholesterol efflux from macrophage cells. Detected in HDL, LDL and VLDL. Secreted by a microsomaltriglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequentlytransferred to HDL. May be involved in myocardium-protective mechanisms against lipid accumulation Gene Wiki entry for APOO (Apolipoprotein O)
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Genomic Views for APOO gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics) About This Section
| RefSeq DNA sequence:- NC_000023.10 NC_018934.1 NT_167197.1
Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the APOO gene promoter: Egr-3 SRF Sp1 SRF (504 AA) IRF-1 Egr-2 HEN1 IRF-2 FOXJ2 (long isoform) FOXJ2 Other transcription factors
Search SABiosciences Chromatin IP Primers for APOO
Epigenetics:
|  | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat APOO |
Genomic Location: Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: Xp22.11 Ensembl cytogenetic band: Xp22.11 HGNC cytogenetic band: Xp22.11APOO Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)

GeneLoc information about chromosome X GeneLoc Exon Structure GeneLoc location for GC0XM023851: view genomic region
(about GC identifiers)
Start:
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23,851,465 bp from pter |
End:
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23,926,057 bp from pter |
Size:
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74,593 bases |
Orientation:
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minus strand |
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Proteins for APOO gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
| UniProtKB/Swiss-Prot: APOO_HUMAN, Q9BUR5 (See
protein sequence)Recommended Name: Apolipoprotein O precursor Size: 198 amino acids; 22285 Da
Subcellular location: Membrane; Single-pass membrane protein (Potential). Secreted
Secondary accessions: B2R4K9 Q9H3J9Alternative splicing: 2 isoforms: Q9BUR5-1 Q9BUR5-2 Explore the universe of human proteins at neXtProt for APOO: NX_Q9BUR5
Post-translational modifications:
O-glycosylation; glycosaminoglycan of chondroitin-sulfate type1
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q9BUR5 APOO Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_077027.1 ENSEMBL proteins: ENSP00000368528 ENSP00000402557 ENSP00000434341 ENSP00000368522 Human Recombinant Protein Products:
Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005615 | extracellular space |
ISS | -- | | GO:0016021 | integral to membrane |
IEA | -- | | GO:0034361 | very-low-density lipoprotein particle |
IEA | -- | | GO:0034362 | low-density lipoprotein particle |
IEA | -- | | GO:0034364 | high-density lipoprotein particle |
IEA | -- |
APOO for ontologies About GeneDecksing
APOO Antibody Products: Assay Products for APOO: |
Protein
Domains / Families for APOO gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
APOO for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry Q9BUR5ProtoNet protein and cluster: Q9BUR5 UniProtKB/Swiss-Prot: APOO_HUMAN, Q9BUR5Similarity: Belongs to the apolipoprotein O family |
Function for APOO gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
| Function Summary: UniProtKB/Swiss-Prot: APOO_HUMAN, Q9BUR5Function: Promotes cholesterol efflux from macrophage cells. Detected in HDL, LDL and VLDL. Secreted by a microsomaltriglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequentlytransferred to HDL. May be involved in myocardium-protective mechanisms against lipid accumulation
Clone Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for APOO (see all 2) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for APOO OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: APOO (NM_024122) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for APOO | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat APOO  |
2 GenomeRNAi human phenotypes for APOO:
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Pathways & Interactions for APOO gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for APOO
Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006869 | lipid transport |
IEA | -- |
APOO for ontologies About GeneDecksing
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Drugs & Compounds for APOO gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
Browse Tocris compounds for APOO Search CenterWatch for drugs/clinical trials and news about APOO 
|
Transcripts for APOO gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
) About This Section
| REFSEQ mRNAs for APOO gene: NM_024122.4 Unigene Cluster for APOO: Apolipoprotein O Hs.495851 [show with all ESTs]Unigene Representative Sequence: NM_0241225 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000379226(uc004dax.3 uc004day.4) ENST00000476598 ENST00000439528 ENST00000490078 ENST00000379220
Clone Products: |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for APOO (see all 2) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for APOO OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: APOO (NM_024122) | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for APOO | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat APOO  |
Additional cDNA sequence: AF061264.1 AK311865.1 AY359114.1 BC002333.2 BC010102.2 BC016814.1 NR_026545.2 8 DOTS entries: DT.415328 DT.91856113 DT.100645432 DT.95274582 DT.95299082 DT.100057054 DT.121289560 DT.75102813 24/120 AceView cDNA sequences (see all 120): BE266369 AI199007 AA689372 AA906634 BC010102 BC002333 NM_024122 AY359114 CF243092 BF431747 AA948373 AL552262 AA732719 BX099786 BM698725 CB105844 CD672752 BM702643 AA176696 BM695981 AA694531 AI452533 AA952958 AI807655 GeneLoc Exon Structure
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Expression for APOO gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| APOO expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this imageBioGPS CGAP TAG: TTGCTATTTA
About this image See APOO Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for APOO
SOURCE GeneReport for Unigene cluster: Hs.495851 UniProtKB/Swiss-Prot: APOO_HUMAN, Q9BUR5Tissue specificity: Expressed in all tissues examined. Up-regulated in diabetic heart SABiosciences Custom PCR Arrays for APOO
Primer Products: |  | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for APOO Browse OriGene validated miRNA SYBR primer pairs
| |  | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat APOO | |  | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat APOO | |  | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat APOO |
Orthologs for APOO gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for APOO gene from 3/13 species (see all 13) About this table
| Organism |
Taxonomic classification |
Gene |
Description |
Human Similarity |
Orthology Type |
Details |
chicken (Gallus gallus) |
Aves |
APOO1 |
apolipoprotein O |
67.2(n) 58.29(a) |
  |
418599 XM_416798.3 XP_416798.1 |
African clawed frog (Xenopus laevis) |
Amphibia |
Xl.25862 |
Xenopus laevis transcribed sequence with weak similarity more |
73.48(n) |
  |
BJ093852.1 |
zebrafish (Danio rerio) |
Actinopterygii |
apooa1 |
apolipoprotein O, a |
52.23(n) 47.42(a) |
  |
641319 NM_001037115.1 NP_001032192.1 |
ENSEMBL Gene Tree for APOO (if available) TreeFam Gene Tree for APOO (if available)  |
Paralogs for APOO gene(Paralogs according to
1HomoloGene, 2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68) About This Section
| Paralogs for APOO gene
- APOOL2
2 SIMAP similar genes for APOO using alignment to 4 protein entries: APOO_HUMAN (see all proteins):DKFZp779P1227 APOOL
APOO for paralogs About GeneDecksing
5/6 Pseudogenes.org Pseudogenes for APOO (see all 6) PGOHUM00000239834 PGOHUM00000248903 PGOHUM00000238093 PGOHUM00000245560 PGOHUM00000235820
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Genomic Variants for APOO gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical significance | Chr X pos | Sequence | # | AA Chg | Type | More | # | Allele freq | Pop | Total sample | More |
|---|
HapMap Linkage Disequilibrium report for APOO (23851465 - 23926057 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for APOO: -- Locus Specific Mutation Databases (LSDB): APOO
 | SABiosciences Cancer Mutation PCR Assays |
|  | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing APOO |
|
Disorders
/ Diseases for APOO gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
APOO for disorders About GeneDecksing
OMIM gene information: 300753
OMIM disorders: --
2 diseases for APOO: About MalaCardsobesity cholesterol Human Genome Epidemiology (HuGE) Navigator: APOO (5 documents) Export disorders for APOO gene to outside databases
|
Publications for APOO gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for APOO gene, integrated from 9 sources (see all 14): (articles sorted by number of sources associating them with APOO) | |  | Utopia: connect your pdf to the dynamic world of online information |
- ApoO, a novel apolipoprotein, is an original glycoprotein up- regulated by diabetes in human heart. (PubMed id 16956892)1, 2, 3 Lamant M....Rouet P. (2006)
- The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2, 3 Clark H.F.... Gray A.M. (2003)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Plasma apolipoprotein O level increased in the patient s with acute coronary syndrome. (PubMed id 22693255)1 Yu B.L....Zhao S.P. (2012)
- An important role for CDK2 in G1 to S checkpoint activation and DNA damage response in human embryonic stem cells. (PubMed id 21319273)1 Neganova I....Lako M. (2011)
- Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
- Genome-wide association study of increasing suicidal ideation during antidepressant treatment in the GENDEP project. (PubMed id 20877300)1 Perroud N....McGuffin P. (2010)
- Variation at the NFATC2 locus increases the risk of t hiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipr il and rosiglitazone Medication (DREAM) study. (PubMed id 20628086)1 Bailey S.D....Anand S. (2010)
- Gene-centric association signals for lipids and apoli poproteins identified via the HumanCVD BeadChip. (PubMed id 19913121)1 Talmud P.J.... . (2009)
- Transcriptomic and genetic studies identify IL-33 as a candidate gene for Alzheimer's disease. (PubMed id 19204726)1 Chapuis J....Lambert J.C. (2009)
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External Searches for APOO gene
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
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Genome Databases showing APOO gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing APOO gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing APOO gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| PharmGKB entry for APOO | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for APOO gene: Search GeneIP for patents involving APOO
GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products for APOO gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
|
 | |
 | |
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| | | | Browse OriGene Antibodies | | OriGene shRNA RFP for APOO | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for APOO | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for APOO | | OriGene Protein Over-expression Lysate for APOO | | Browse OriGene Fluorogenic Cell Assay Kits | | OriGene siRNA for APOO | | OriGene 3'-UTR Clone for APOO | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for APOO | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for APOO | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | OriGene Purified Protein for APOO | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | OriGene Custom Antibody Services for APOO | | OriGene Custom Protein Services for APOO | | OriGene Custom Immunoassay Development | | |
| |  |
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| | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat APOO | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing APOO | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat APOO | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat APOO | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat APOO | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat APOO |
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 |  |  |  | |
| | | Search Tocris compounds for APOO |
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 | | APOO Proteins, Antibodies, CLIAs, and ELISAs |
| | | |  |  |  | | | ThermoFisher Antibodies for APOO |
| | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat APOO |
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