APOL5 Gene
protein-coding GIFtS : 54
GCID: GC22 P036113
apolipoprotein L, 5
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Aliasesfor APOL5 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Apolipoprotein L, 5 1 2 APOLV1 2 Apolipoprotein L-V2 3 APOL-V2 Apolipoprotein L52 ApoL-V3
Export aliases for APOL5 gene to outside databases Previous GC identifers: GC22P032757 GC22P034385 GC22P034438 GC22P019076
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Summariesfor APOL5 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for APOL5 : This gene is a member of the apolipoprotein L gene family. The encoded protein is found in the cytoplasm, where it may affect the movement of lipids or allow the binding of lipids to organelles. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: APOL5_HUMAN, Q9BWW9 Function : May affect the movement of lipids in the cytoplasm or allow the binding of lipids to organelles
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Genomic Viewsfor APOL5 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000022.10 NC_018933.1 NT_011520.12 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the APOL5 gene promoter: HEN1 c-Myb FOXD1 Other transcription factors Search SABiosciences Chromatin IP Primers for APOL5 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat APOL5
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 22q12.3 Ensembl cytogenetic band: 22q12.3 HGNC cytogenetic band: 22q12.3 APOL5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 22 GeneLoc Exon Structure
GeneLoc location for GC22P036113: view genomic region
(about GC identifiers )
Start:
36,113,919 bp from pter
End:
36,125,530 bp from pter
Size:
11,612 bases
Orientation:
plus strand
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Proteinsfor APOL5 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: APOL5_HUMAN, Q9BWW9 (See
protein sequence )Recommended Name: Apolipoprotein L5 Size : 433 amino acids; 47044 Da
Subcellular location : Cytoplasm (Probable)
Secondary accessions : Q5TFL9 Q9UGW5Explore the universe of human proteins at neXtProt for APOL5: NX_Q9BWW9 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9BWW9 APOL5 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_085145.1 ENSEMBL proteins: ENSP00000249044 Human Recombinant Protein Products: Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view) : About this table
APOL5 for ontologies About GeneDecksing APOL5 Antibody Products: Assay Products for APOL5:
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Protein
Domains / Familiesfor APOL5 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
APOL5 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q9BWW9 ProtoNet protein and cluster: Q9BWW9
1 Blocks protein family : IPB008405 Apolipoprotein L UniProtKB/Swiss-Prot: APOL5_HUMAN, Q9BWW9 Similarity : Belongs to the apolipoprotein L family
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Functionfor APOL5 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: APOL5_HUMAN, Q9BWW9 Function : May affect the movement of lipids in the cytoplasm or allow the binding of lipids to organelles
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for APOL5 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for APOL5OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: APOL5 (NM_030642 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for APOL5 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat APOL5
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for APOL5
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
APOL5 for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for APOL5 :
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Pathways & Interactionsfor APOL5 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways   About this table See pathways by source Super-pathway contained gene-specific pathways 1 Cholesterol and Sphingolipids transport / Recycling to plasma membrane in lung (normal and CF)
Pathway sources See GeneCards unified pathways Show all pathways 1 GeneGo (Thomson Reuters) Pathway for APOL5 Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for APOL5 STRING Interaction
Network Preview (showing 5 interactants - click image to see 7)5/7 Interacting proteins for APOL5 (Q9BWW9 1 , 2 , 3 ENSP00000249044 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 7 )Interactant Interaction Details GeneCard External ID(s) ABL1 P00519 1 , 2 , 3 , ENSP00000361423 4 EBI-1753592,EBI-375543 MINT-8110033 I2D:
score=3 STRING: ENSP00000361423 FYN P06241 1 , 2 , 3 , ENSP00000357656 4 EBI-1753592,EBI-515315 MINT-8110923 I2D:
score=3 STRING: ENSP00000357656 PIK3R1 P27986 1 , 2 , 3 , ENSP00000274335 4 EBI-1753592,EBI-79464 MINT-8111691 I2D:
score=3 STRING: ENSP00000274335 CRK P46108 1 , 3 , ENSP00000300574 4 EBI-1753592,EBI-886 I2D:
score=2 STRING: ENSP00000300574 SRC P12931 1 , 2 , 3 , ENSP00000350941 4 EBI-1753592,EBI-621482 MINT-8112903 I2D:
score=3 STRING: ENSP00000350941
About this table Gene Ontology (GO): 3 biological process terms (GO ID links to tree view) : About this table
APOL5 for ontologies About GeneDecksing
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Drugs & Compoundsfor APOL5 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for APOL5 Search CenterWatch for drugs/clinical trials and news about APOL5
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Transcriptsfor APOL5 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for APOL5 gene: NM_030642.1 Unigene Cluster for APOL5:
Apolipoprotein L, 5 Hs.326561 [show with all ESTs ] Unigene Representative Sequence: NM_030642 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000249044 (uc003aof.3 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for APOL5 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for APOL5OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: APOL5 (NM_030642 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for APOL5 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat APOL5
Additional cDNA sequence: AY014878.1
2 DOTS entries : DT.65287960 DT.40270399
9 AceView cDNA sequences :
AY014878 AL045459 H55142 NM_030642 AI277636 BX280778 AW369416 AL045458 AI740692 GeneLoc Exon Structure
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Expression for APOL5 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section APOL5 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: AGCAGCTTCC
About this image APOL5 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Bone Zeugopod Growth Plate Bone Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See APOL5 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for APOL5 SOURCE GeneReport for Unigene cluster: Hs.326561 UniProtKB/Swiss-Prot: APOL5_HUMAN, Q9BWW9 Tissue specificity : Low level of expression; detected in uterus, testis, skeletal muscle and stomach SABiosciences Expression via Pathway-Focused PCR Array including APOL5 : Lipoprotein Signaling & Cholesterol Metabolism in human mouse rat
Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for APOL5Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse / rat APOL5 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat APOL5 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat APOL5 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for APOL5
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Orthologsfor APOL5 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for APOL5 gene from 1/5 species (see all 5 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
lizard (Anolis carolinensis)
Reptilia
----
--
51(a) 37(a)
many ↔ manymany ↔ many
5(21779188-21779424) 5(21749807-21750637)
ENSEMBL Gene Tree for APOL5 (if available)TreeFam Gene Tree for APOL5 (if available)
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Paralogsfor APOL5 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for APOL5 gene APOL4 2 APOL6 2 APOL2 2 APOL1 2 APOL3 2 APOLD1 2 2 SIMAP similar genes for APOL5 using alignment to 1 protein entry: APOL5_HUMAN :APOL6 ApoL6
APOL5 for paralogs About GeneDecksing
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Genomic Variantsfor APOL5 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 22 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for APOL5 (36113919 - 36125530 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 1 variation for APOL5 1 CNV : 36021
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing APOL5
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Disorders
/ Diseasesfor APOL5 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
APOL5 for disorders About GeneDecksing
OMIM gene information: 607255
OMIM disorders : --1 disease for APOL5 : About MalaCards cholesterol Human Genome Epidemiology (HuGE) Navigator: APOL5 (3 documents) Export disorders for APOL5 gene to outside databases
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Publicationsfor APOL5 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for APOL5 gene integrated from 9 sources : (articles sorted by number of sources associating them with APOL5) Utopia : connect your pdf to the dynamic world of online information
The human apolipoprotein L gene cluster: identification, classification, and sites of distribution. (PubMed id 11374903) 1 , 2 , 3 Page N.M....Lowry P.J. (2001) The DNA sequence of human chromosome 22. (PubMed id 10591208) 1 , 2 Dunham I....O'Brien K.P. (1999) Genetic associations of brain structural networks in schizophrenia: a preliminary study. (PubMed id 20691427) 1 Jagannathan K....Pearlson G.D. (2010) Physiogenomic analysis of statin-treated patients: do main-specific counter effects within the ACACB gene on low-density lipoprotein cholesterol? (PubMed id 20602615) 1 RuaA+o G....Wu A.H. (2010) Systematic identification of SH3 domain-mediated human protein-protein interactions by peptide array target screening. (PubMed id 17474147) 1 Wu C....Li S.S. (2007) Embryo lipoproteins and yolk lipovitellin consumption during embryogenesis in Macrobrachium borellii (Crustacea: Palaemonidae). (PubMed id 18721894) 9 Garcia F....Heras H. (2008)
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External Searches for APOL5 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing APOL5 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing APOL5 gene
(According to HUGE )
About This Section --
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Specialized Databases showing APOL5 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for APOL5 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for APOL5 gene: Search GeneIP for patents involving APOL5 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor APOL5 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for APOL5 OriGene shRNA RFP for APOL5 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for APOL5 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for APOL5 Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for APOL5 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for APOL5 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for APOL5 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for APOL5 OriGene Custom Protein Services for APOL5 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat APOL5 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing APOL5 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat APOL5 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat APOL5 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat APOL5 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat APOL5
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APOL5 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for APOL5
ThermoFisher Antibodies for APOL5
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat APOL5
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Aliases for APOL5
Databases for APOL5
Disorders / Diseases for APOL5
Domains / Families for APOL5
Drugs / Compounds for APOL5
Expression for APOL5
Function for APOL5
Genomic Views for APOL5
Intellectual Property for APOL5
Orthologs for APOL5
Paralogs for APOL5
Pathways / Interactions for APOL5
Products for APOL5
Proteins for APOL5
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Summaries for APOL5
Transcripts for APOL5
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