APOL2 Gene
protein-coding GIFtS: 56
GCID: GC22M036622
|
|
apolipoprotein L, 2
| |
Aliases
for APOL2 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Apolipoprotein L, 21 2 | | APOL-II1 2 | | Apolipoprotein L-II2 3 | | APOL32 | | Apolipoprotein L22 | | ApoL-II3 |
Export aliases for APOL2 gene to outside databasesPrevious GC identifers: GC22M033265 GC22M034894 GC22M034946 GC22M019590 |
Summaries
for APOL2 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for APOL2:
This gene is a member of the apolipoprotein L gene family. The encoded protein is found in the cytoplasm, where it mayaffect the movement of lipids or allow the binding of lipids to organelles. Two transcript variants encoding the sameprotein have been found for this gene. (provided by RefSeq, Jul 2008)
UniProtKB/Swiss-Prot: APOL2_HUMAN, Q9BQE5Function: May affect the movement of lipids in the cytoplasm or allow the binding of lipids to organelles
Gene Wiki entry for APOL2
|
Genomic Views
for APOL2 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000022.10 NC_018933.1 NT_011520.12
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the APOL2 gene promoter:
Bach1 GR RREB-1 GR-beta GR-alpha
Other transcription factors
Search SABiosciences Chromatin IP Primers for APOL2
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat APOL2 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 22q12 Ensembl cytogenetic band: 22q12.3 HGNC chromosome: 22APOL2 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 22 GeneLoc Exon Structure GeneLoc location for GC22M036622: view genomic region
(about GC identifiers)
Start:
|
36,622,255 bp from pter |
End:
|
36,636,000 bp from pter |
Size:
|
13,746 bases |
Orientation:
|
minus strand |
|
Proteins
for APOL2 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: APOL2_HUMAN, Q9BQE5 (See
protein sequence)Recommended Name: Apolipoprotein L2 Size: 337 amino acids; 37092 Da
Subcellular location: Cytoplasm (Probable)
Sequence caution: Sequence=BAD92227.1; Type=Erroneous initiation;
Secondary accessions: B0QYK7 O95915 Q59GW9 Q5TH96 Q969T6 Q9BT28 Q9UGT1 Q9UH10Explore the universe of human proteins at neXtProt for APOL2: NX_Q9BQE5
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q9BQE5
APOL2 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (2 alternative transcripts):
NP_112092.1 NP_663612.1
ENSEMBL proteins: ENSP00000351292 ENSP00000249066 ENSP00000403153 ENSP00000431231 ENSP00000400486
Human Recombinant Protein Products:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table
APOL2 for ontologies About GeneDecksing
APOL2 Antibody Products:
Assay Products for APOL2: |
Protein
Domains /
Families
for APOL2 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
APOL2 for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry Q9BQE5ProtoNet protein and cluster: Q9BQE5 1 Blocks protein family: IPB008405 Apolipoprotein L
UniProtKB/Swiss-Prot: APOL2_HUMAN, Q9BQE5Similarity: Belongs to the apolipoprotein L family |
Function
for APOL2 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: APOL2_HUMAN, Q9BQE5Function: May affect the movement of lipids in the cytoplasm or allow the binding of lipids to organelles Genatlas biochemistry entry for APOL2:apolipoprotein L,2
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for APOL2 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for APOL2 (see all 2)
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for APOL2 |
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view): About this table
APOL2 for ontologies About GeneDecksing
1 GenomeRNAi human phenotype for APOL2:
|
Pathways & Interactions
for APOL2 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Cholesterol and Sphingolipids transport / Recycling to plasma membrane in lung (normal and CF) | |
Pathway sources
See GeneCards unified pathways
Show all pathways
1  GeneGo (Thomson Reuters) Pathway for APOL2
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for APOL2
STRING Interaction
Network Preview (showing 2 interactants - click image to see more details)
3 Interacting proteins for APOL2 (Q9BQE53 ENSP000002490664) via UniProtKB, MINT, STRING, and/or I2DAbout this table
Gene Ontology (GO): 5/7 biological process terms (GO ID links to tree view) (see all 7): About this table
APOL2 for ontologies About GeneDecksing
|
Drugs & Compounds
for APOL2 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for APOL2
Search CenterWatch for drugs/clinical trials and news about APOL2
|
Transcripts
for APOL2 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for APOL2 gene (2 alternative transcripts): NM_030882.2 NM_145637.1 Unigene Cluster for APOL2: Apolipoprotein L, 2 Hs.474740 [show with all ESTs]Unigene Representative Sequence: AF3242249 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000358502(uc011amm.2 uc003aoz.3) ENST00000249066(uc003apa.3)
ENST00000451256 ENST00000529194 ENST00000454728 ENST00000476579 ENST00000489186
ENST00000473549 ENST00000484830
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for APOL2 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for APOL2 (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector (see all 2): APOL2 (NM_030882) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for APOL2 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat APOL2 |
Additional cDNA sequence: AB208990.1 AF305225.1 AF305429.1 AF324223.1 AF324224.1 AK056938.1 AK092839.1 AK303978.1 BC004395.1 13 DOTS entries: DT.91938360 DT.40299557 DT.92008485 DT.427943 DT.95102291 DT.95198024 DT.97797054 DT.70101552 DT.100784675 DT.120666326 DT.91852499 DT.95101152 DT.99938944 24/164 AceView cDNA sequences (see all 164): BU584416 BQ688259 BX115911 BU517088 AL599525 BU584139 AI082211 BU677850 NM_145637 AU279422 BQ948529 CR593100 CB108991 CB125020 BF915103 BG743878 BU522058 BU584681 BU584676 BU584522 BI547539 CD632856 R80434 AL709165
GeneLoc Exon Structure
5/10 Alternative Splicing Database (ASD) splice patterns (SP) for APOL2 (see all 10) About this scheme
| ExUns: | 1 | ^ | 2a | · | 2b | · | 2c | · | 2d | · | 2e | ^ | 3a | · | 3b | ^ | 4a | · | 4b | · | 4c | · | 4d | · | 4e | · | 4f | · | 4g | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8a | · | 8b | ^ | 9a | · | 9b | ^ | 10a | · | 10b | · | 10c |
|---|
|
| SP1: | | | | | | | | | | | | | - | | - | | - | | - | | - | | - | | - | | - | | - | | - | | | | | | | | - | | | | | | | | | | | | |
| SP2: | | | | | | | | | | | | | - | | - | | - | | - | | | | - | | - | | - | | - | | - | | - | | | | | | - | | | | | | | | | | | | |
| SP3: | | | - | | - | | - | | | | | | - | | - | | - | | - | | - | | - | | - | | - | | - | | - | | - | | | | | | - | | | | | | | | | | | | |
| SP4: | | | | | | | | | | | | | - | | - | | - | | - | | - | | - | | - | | - | | - | | - | | - | | | | | | - | | | | | | | | | | | | |
| SP5: | | | | | | | | | | | | | | | | | - | | - | | - | | - | | - | | - | | - | | - | | - | | | | | | - | | | | | | | | | | | |
ECgene alternative splicing isoforms for APOL2
|
Expression
for APOL2 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| APOL2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
See APOL2 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for APOL2
SOURCE GeneReport for Unigene cluster: Hs.474740
UniProtKB/Swiss-Prot: APOL2_HUMAN, Q9BQE5Tissue specificity: Widely expressed; the highest levels are found in lung, thymus, pancreas, placenta, adult brain andprostate; also detected in spleen, liver, kidney, colon, small intestine, uterus, spinal cord, adrenal gland, salivarygland, trachea, mammary gland, skeletal muscle, testis and fetal brain and liver
SABiosciences Expression via Pathway-Focused PCR Arrays including APOL2:
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for APOL2
Browse OriGene validated miRNA SYBR primer pairs
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Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for APOL2 |
Orthologs
for APOL2 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for APOL2 gene from 1/6 species (see all 6) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
lizard
(Anolis carolinensis) |
Reptilia |
---- |
-- |
44(a)37(a) |
many ↔ manymany ↔ many |
5(21779188-21779424) 5(21749807-21750637) |
ENSEMBL Gene Tree for APOL2 (if available)
TreeFam Gene Tree for APOL2 (if available) |
Paralogs
for APOL2 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for APOL2 gene
- APOL42 APOL62 APOL52 APOL12 APOL32 APOLD12
5 SIMAP similar genes for APOL2 using alignment to 4 protein entries: APOL2_HUMAN (see all proteins):APOL1 APOL3 APOL4 APOL6 ApoL6
APOL2 for paralogs About GeneDecksing
2 Pseudogenes.org Pseudogenes for APOL2
PGOHUM00000246323 PGOHUM00000250341
|
Genomic Variants
for APOL2 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 22 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for APOL2 (36622255 - 36636000 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for APOL2
1 Inversion: 59779 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing APOL2 |
|
Disorders
/ Diseases
for APOL2 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
APOL2 for disorders About GeneDecksing
OMIM gene information: 607252
OMIM disorders: 181500
8  diseases for APOL2: About MalaCardsphencyclidine abuse velocardiofacial syndrome peritoneal carcinoma peritonitis
cholesterol schizophrenia carcinoma prostatitis
1 disease from the University of Copenhagen DISEASES database for APOL2:Peritoneal carcinoma Genetic Association Database (GAD): APOL2
Human Genome Epidemiology (HuGE) Navigator: APOL2 (3 documents)
Export disorders for APOL2 gene to outside databases
|
Publications
for APOL2 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for APOL2 gene, integrated from 9 sources (see all 20):
(articles sorted by number of sources associating them with APOL2) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- The human apolipoprotein L gene cluster: identification, classification, and sites of distribution. (PubMed id 11374903)1, 2, 3 Page N.M....Lowry P.J. (2001)
- The DNA sequence of human chromosome 22. (PubMed id 10591208)1, 2, 3 Dunham I....O'Brien K.P. (1999)
- Apolipoprotein L gene family: tissue-specific expression, splicing, promoter regions; discovery of a new gene. (PubMed id 11290834)1, 2, 9 Duchateau P.N.... Kane J.P. (2001)
- Investigation of the apolipoprotein-L (APOL) gene family and schizophrenia using a novel DNA pooling strategy for public database SNPs. (PubMed id 15949655)1, 4 McGhee K.A....Corvin A. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- The apolipoprotein L gene cluster has emerged recently in evolution and is expressed in human vascular tissue. (PubMed id 11944986)1, 2 Monajemi H.... Horrevoets A.J.G. (2002)
- Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
- Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
- A novel anti-apoptotic role for apolipoprotein L2 in IFN-I^-induced cytotoxicity in human bronchial epithelial cells. (PubMed id 20665705)1 Liao W....Wong W.S. (2011)
|
External Searches for APOL2 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing APOL2 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing APOL2 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing APOL2 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for APOL2 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for APOL2 gene:
Search GeneIP for patents involving APOL2
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for APOL2 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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| |
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| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for APOL2 |
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