Free for academic non-profit institutions. Other users need a Commercial license

Aliases for APOC1P1 Gene

Aliases for APOC1P1 Gene

  • Apolipoprotein C1 Pseudogene 1 2 3 5
  • Apolipoprotein C-I Pseudogene 1 2

External Ids for APOC1P1 Gene

Previous GeneCards Identifiers for APOC1P1 Gene

  • GC19U990003
  • GC19P045430

Summaries for APOC1P1 Gene

GeneCards Summary for APOC1P1 Gene

APOC1P1 (Apolipoprotein C1 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for APOC1P1 Gene

Genomics for APOC1P1 Gene

Regulatory Elements for APOC1P1 Gene

Enhancers for APOC1P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G044923 1.7 FANTOM5 Ensembl ENCODE 10.6 -0.8 -792 4.3 HDGF FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 APOC1P1 APOC2 APOC4 IGSF23 BCAM APOE APOC1 GC19P044915
GH19G044889 1.5 FANTOM5 ENCODE 4.4 -35.1 -35077 5.1 CREB3L1 AGO1 FEZF1 DMAP1 YY1 ZNF143 SP3 NFYC MEF2D SSRP1 ZNF180 ZNF234 ZNF225 MRPS15P2 DM1-AS RELB ZNF45 ENSG00000259605 APOE NECTIN2
GH19G045597 1.3 Ensembl ENCODE dbSUPER 4.6 +672.2 672175 2.8 KLF1 KLF17 EBF1 ZIC2 ZNF664 ZFHX2 GATA2 ZBTB48 ZNF600 PRDM10 CCDC61 ENSG00000268810 APOC1P1 GPR4 GC19P045560
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around APOC1P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for APOC1P1 Gene

Chromosome:
19
Start:
44,926,803 bp from pter
End:
44,931,386 bp from pter
Size:
4,584 bases
Orientation:
Plus strand

Genomic View for APOC1P1 Gene

Genes around APOC1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
APOC1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APOC1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APOC1P1 Gene

Proteins for APOC1P1 Gene

Post-translational modifications for APOC1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for APOC1P1 Gene

Domains & Families for APOC1P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for APOC1P1 Gene

Function for APOC1P1 Gene

Molecular function for APOC1P1 Gene

GENATLAS Biochemistry:
apolipoprotein C-I,pseudogene 1

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APOC1P1 Gene

Localization for APOC1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for APOC1P1 Gene

Pathways & Interactions for APOC1P1 Gene

SuperPathways for APOC1P1 Gene

No Data Available

Interacting Proteins for APOC1P1 Gene

Gene Ontology (GO) - Biological Process for APOC1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for APOC1P1 Gene

Drugs & Compounds for APOC1P1 Gene

No Compound Related Data Available

Transcripts for APOC1P1 Gene

mRNA/cDNA for APOC1P1 Gene

(4) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for APOC1P1 Gene

Apolipoprotein C-I pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for APOC1P1 Gene

No ASD Table

Relevant External Links for APOC1P1 Gene

GeneLoc Exon Structure for
APOC1P1
ECgene alternative splicing isoforms for
APOC1P1

Expression for APOC1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for APOC1P1 Gene

mRNA differential expression in normal tissues according to GTEx for APOC1P1 Gene

This gene is overexpressed in Liver (x45.7).

NURSA nuclear receptor signaling pathways regulating expression of APOC1P1 Gene:

APOC1P1

SOURCE GeneReport for Unigene cluster for APOC1P1 Gene:

Hs.729930
genes like me logo Genes that share expression patterns with APOC1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for APOC1P1 Gene

Orthologs for APOC1P1 Gene

Evolution for APOC1P1 Gene

ENSEMBL:
Gene Tree for APOC1P1 (if available)
TreeFam:
Gene Tree for APOC1P1 (if available)

No data available for Orthologs for APOC1P1 Gene

Paralogs for APOC1P1 Gene

No data available for Paralogs for APOC1P1 Gene

Variants for APOC1P1 Gene

Sequence variations from dbSNP and Humsavar for APOC1P1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000458922 -- 44,928,468(+) CTCAC(A/G)CCTGT intron-variant
rs1001116960 -- 44,926,447(+) AATGA(-/G)GGGGG upstream-variant-2KB
rs1002558782 -- 44,926,653(+) CCCAA(C/T)GCCCA upstream-variant-2KB
rs1002782774 -- 44,931,452(+) CTGCA(A/G)CCTGG downstream-variant-500B
rs1003189847 -- 44,926,805(+) TCCCA(A/G)CCAAG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for APOC1P1 Gene

Variant ID Type Subtype PubMed ID
nsv509747 CNV insertion 20534489

Relevant External Links for APOC1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
APOC1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for APOC1P1 Gene

Disorders for APOC1P1 Gene

Relevant External Links for APOC1P1

Genetic Association Database (GAD)
APOC1P1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
APOC1P1

No disorders were found for APOC1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for APOC1P1 Gene

Publications for APOC1P1 Gene

  1. Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations. (PMID: 22359512) Demirkan A. … Schmitz G. (PLoS Genet. 2012) 3 46 64
  2. Detection of two distinct forms of apoC-I in great apes. (PMID: 20209111) Puppione D.L. … Whitelegge J.P. (Comp. Biochem. Physiol. Part D Genomics Proteomics 2010) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  4. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang A.G. … Kim N.S. (Biochem. Biophys. Res. Commun. 2006) 3 64
  5. Insight into hepatocellular carcinogenesis at transcriptome level by comparing gene expression profiles of hepatocellular carcinoma with those of corresponding noncancerous liver. (PMID: 11752456) Xu X.R. … Han Z.G. (Proc. Natl. Acad. Sci. U.S.A. 2001) 3 64

Products for APOC1P1 Gene

Sources for APOC1P1 Gene

Content
Loading form....