Aliases for APOC1P1 Gene
External Ids for APOC1P1 Gene
- HGNC: 608
- Entrez Gene: 342
- Ensembl: ENSG00000214855
Previous GeneCards Identifiers for APOC1P1 Gene
- GC19U990003
- GC19P045430
Summaries for APOC1P1 Gene
GeneCards Summary for APOC1P1 Gene
APOC1P1 (Apolipoprotein C1 Pseudogene 1) is a Pseudogene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for APOC1P1 Gene
Genomics for APOC1P1 Gene
Regulatory Elements for APOC1P1 Gene
Enhancers for APOC1P1 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH19G044923 | 1.7 | FANTOM5 Ensembl ENCODE | 10.6 | -0.8 | -792 | 4.3 | HDGF FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 | APOC1P1 APOC2 APOC4 IGSF23 BCAM APOE APOC1 GC19P044915 |
| GH19G044889 | 1.5 | FANTOM5 ENCODE | 4.4 | -35.1 | -35077 | 5.1 | CREB3L1 AGO1 FEZF1 DMAP1 YY1 ZNF143 SP3 NFYC MEF2D SSRP1 | ZNF180 ZNF234 ZNF225 MRPS15P2 DM1-AS RELB ZNF45 ENSG00000259605 APOE NECTIN2 |
| GH19G045597 | 1.3 | Ensembl ENCODE dbSUPER | 4.6 | +672.2 | 672175 | 2.8 | KLF1 KLF17 EBF1 ZIC2 ZNF664 ZFHX2 GATA2 ZBTB48 ZNF600 PRDM10 | CCDC61 ENSG00000268810 APOC1P1 GPR4 GC19P045560 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around APOC1P1 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for APOC1P1 Gene
- Chromosome:
- 19
- Start:
- 44,926,803 bp from pter
- End:
- 44,931,386 bp from pter
- Size:
- 4,584 bases
- Orientation:
- Plus strand
Genomic View for APOC1P1 Gene
Genes around APOC1P1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 19q13.32 by Ensembl
- 19q13.32 by Entrez Gene
- 19q13.32 by HGNC
APOC1P1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for APOC1P1 Gene
Proteins for APOC1P1 Gene
Post-translational modifications for APOC1P1 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for APOC1P1
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for APOC1P1
- Origene Custom Protein Services for APOC1P1
- Search GeneTex for Proteins for APOC1P1
Assay Products
No data available for DME Specific Peptides for APOC1P1 Gene
Domains & Families for APOC1P1 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for APOC1P1 Gene
Function for APOC1P1 Gene
Molecular function for APOC1P1 Gene
- GENATLAS Biochemistry:
- apolipoprotein C-I,pseudogene 1
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for APOC1P1
-
- Search ViGene Biosciences for APOC1P1
CRISPR Products
- Browse CRISPR knockouts for APOC1P1
miRNA Products
- Search ViGene Biosciences for APOC1P1
Inhibitory RNA Products
- Search ViGene Biosciences for APOC1P1
Clone Products
- GenScript: Custom all cDNA clones Services for APOC1P1
- VectorBuilder custom plasmid, inducible vectors for APOC1P1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for APOC1P1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
- Search ViGene Biosciences for APOC1P1
Flow Cytometry Products
No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APOC1P1 Gene
Localization for APOC1P1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for APOC1P1 Gene
Transcripts for APOC1P1 Gene
mRNA/cDNA for APOC1P1 Gene
- (4) Additional mRNA sequences :
- (5) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for APOC1P1 Gene
CRISPR Products
- Browse CRISPR knockouts for APOC1P1
miRNA Products
- Search ViGene Biosciences for APOC1P1
Inhibitory RNA Products
- Search ViGene Biosciences for APOC1P1
Clone Products
- GenScript: Custom all cDNA clones Services for APOC1P1
- VectorBuilder custom plasmid, inducible vectors for APOC1P1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for APOC1P1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for APOC1P1 Gene
mRNA differential expression in normal tissues according to GTEx for APOC1P1 Gene
This gene is overexpressed in Liver (x45.7).
NURSA nuclear receptor signaling pathways regulating expression of APOC1P1 Gene:
APOC1P1SOURCE GeneReport for Unigene cluster for APOC1P1 Gene:
Hs.729930
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for APOC1P1 Gene
Orthologs for APOC1P1 Gene
No data available for Orthologs for APOC1P1 Gene
Paralogs for APOC1P1 Gene
No data available for Paralogs for APOC1P1 Gene
Variants for APOC1P1 Gene
| SNP ID | Clin | Chr 19 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000458922 | -- | 44,928,468(+) | CTCAC(A/G)CCTGT | intron-variant | |
| rs1001116960 | -- | 44,926,447(+) | AATGA(-/G)GGGGG | upstream-variant-2KB | |
| rs1002558782 | -- | 44,926,653(+) | CCCAA(C/T)GCCCA | upstream-variant-2KB | |
| rs1002782774 | -- | 44,931,452(+) | CTGCA(A/G)CCTGG | downstream-variant-500B | |
| rs1003189847 | -- | 44,926,805(+) | TCCCA(A/G)CCAAG | nc-transcript-variant |
Relevant External Links for APOC1P1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- APOC1P1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for APOC1P1 Gene
Disorders for APOC1P1 Gene
Relevant External Links for APOC1P1
No disorders were found for APOC1P1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for APOC1P1 Gene
Publications for APOC1P1 Gene
- Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations. (PMID: 22359512) Demirkan A. … Schmitz G. (PLoS Genet. 2012) 3 46 64
- Detection of two distinct forms of apoC-I in great apes. (PMID: 20209111) Puppione D.L. … Whitelegge J.P. (Comp. Biochem. Physiol. Part D Genomics Proteomics 2010) 3 64
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
- Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang A.G. … Kim N.S. (Biochem. Biophys. Res. Commun. 2006) 3 64
- Insight into hepatocellular carcinogenesis at transcriptome level by comparing gene expression profiles of hepatocellular carcinoma with those of corresponding noncancerous liver. (PMID: 11752456) Xu X.R. … Han Z.G. (Proc. Natl. Acad. Sci. U.S.A. 2001) 3 64
Products for APOC1P1 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for APOC1P1
- Origene Custom Protein Services for APOC1P1
- Browse OriGene Inhibitory RNA Products For APOC1P1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for APOC1P1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For APOC1P1
- GenScript: Custom all cDNA clones Services for APOC1P1
- GenScript Custom Purified and Recombinant Proteins Services for APOC1P1
- GenScript Custom Assay Services for APOC1P1
- GenScript Custom overexpressing Cell Line Services for APOC1P1
- Browse GenScript CRISPR for APOC1P1
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for APOC1P1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for APOC1P1
- VectorBuilder custom plasmid, inducible vectors for APOC1P1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for APOC1P1
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for APOC1P1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer