APOBR Gene
protein-coding GIFtS: 41
GCID: GC16P028506
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apolipoprotein B receptor
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Aliases
for APOBR gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Apolipoprotein B Receptor1 2 | | Apolipoprotein B-48 Receptor2 3 | | APOB48R1 2 3 5 | | Apolipoprotein B48 Receptor2 3 | | APOB100R1 2 | | ApoB-48R1 | | Apolipoprotein B-100 Receptor2 3 | | Apolipoprotein B100 Receptor2 |
Export aliases for APOBR gene to outside databases |
Summaries
for APOBR gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for APOBR:
Apolipoprotein B48 receptor is a macrophage receptor that binds to the apolipoprotein B48 of dietary triglyceride(TG)-rich lipoproteins. This receptor may provide essential lipids, lipid-soluble vitamins and other nutrients toreticuloendothelial cells. If overwhelmed with elevated plasma triglyceride, the apolipoprotein B48 receptor maycontribute to foam cell formation, endothelial dysfunction, and atherothrombogenesis. (provided by RefSeq, Jul 2008)
UniProtKB/Swiss-Prot: APOBR_HUMAN, Q0VD83Function: Macrophage receptor that binds to the apolipoprotein B48 (APOB) of dietary triglyceride (TG)-richlipoproteins (TRL) or to a like domain of APOB in hypertriglyceridemic very low density lipoprotein (HTG-VLDL). Bindsand internalizes TRL when out of the context of the macrophage. May provide essential lipids to reticuloendothelialcells. Could also be involved in foam cell formation with elevated TRL and remnant lipoprotein (RLP). Mediates therapid high-affinity uptake of chylomicrons (CM), HTG-VLDL, and trypsinized (tryp) VLDL devoid of APOE in vitro inmacrophages
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Genomic Views
for APOBR gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000016.9 NC_018927.1 NT_010393.16
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for APOBR
Other transcription factors
Search SABiosciences Chromatin IP Primers for APOBR
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat APOBR |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 16p11 Ensembl cytogenetic band: 16p11.2 HGNC cytogenetic band: 16p11.2APOBR Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 16 GeneLoc Exon Structure GeneLoc location for GC16P028506: view genomic region
(about GC identifiers)
Start:
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28,505,970 bp from pter |
End:
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28,510,291 bp from pter |
Size:
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4,322 bases |
Orientation:
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plus strand |
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Proteins
for APOBR gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: APOBR_HUMAN, Q0VD83 (See
protein sequence)Recommended Name: Apolipoprotein B receptor Size: 1088 amino acids; 114820 Da
Subunit: Homodimer
Subcellular location: Cell membrane; Peripheral membrane protein. Note=Binds monocyte-macrophage membrane. Thought tobe anchored in the membrane through an interaction with an integral membrane protein
Secondary accessions: Q0VD81 Q8NC15 Q9NPJ9Alternative splicing: 3 isoforms: Q0VD83-1 Q0VD83-2 Q0VD83-3 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for APOBR: NX_Q0VD83
Post-translational modifications:
There are 2 forms in macrophages, the membrane-binding proteins 200 kDa (MBP 200) and 235 kDa (MBP 235), that can bereduced into a single active ligand-binding species with intermediate mobility (MBP 200R)1
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q0VD83
APOBR Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_061160.3
ENSEMBL proteins: ENSP00000457539 ENSP00000327669 ENSP00000416094
Human Recombinant Protein Products:
Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view): About this table
APOBR for ontologies About GeneDecksing
APOBR Antibody Products:
Assay Products for APOBR: |
Protein
Domains /
Families
for APOBR gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
APOBR for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry Q0VD83ProtoNet protein and cluster: Q0VD83 |
Function
for APOBR gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: APOBR_HUMAN, Q0VD83Function: Macrophage receptor that binds to the apolipoprotein B48 (APOB) of dietary triglyceride (TG)-richlipoproteins (TRL) or to a like domain of APOB in hypertriglyceridemic very low density lipoprotein (HTG-VLDL). Bindsand internalizes TRL when out of the context of the macrophage. May provide essential lipids to reticuloendothelialcells. Could also be involved in foam cell formation with elevated TRL and remnant lipoprotein (RLP). Mediates therapid high-affinity uptake of chylomicrons (CM), HTG-VLDL, and trypsinized (tryp) VLDL devoid of APOE in vitro inmacrophagesInduction: Suppressed significantly by PPARA and PPARG in THP-1 and blood-borne monocyte-macrophages. Decreased afterpitavastatin treatment in peripheral blood macrophages and remnant lipoprotein (RLP)-induced foam cell formation
Clone
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OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for APOBR
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for APOBR |
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0004872 | receptor activity |
-- | -- | | GO:0030228 | lipoprotein particle receptor activity |
IEA | -- | | GO:0030229 | very-low-density lipoprotein particle receptor activity |
-- | -- |
APOBR for ontologies About GeneDecksing
|
Pathways & Interactions
for APOBR gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for APOBR
Gene Ontology (GO): 3 biological process terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006641 | triglyceride metabolic process |
-- | -- | | GO:0006869 | lipid transport |
IEA | -- | | GO:0008203 | cholesterol metabolic process |
IEA | -- |
APOBR for ontologies About GeneDecksing
|
Drugs & Compounds
for APOBR gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for APOBR
Search CenterWatch for drugs/clinical trials and news about APOBR
|
Transcripts
for APOBR gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for APOBR gene: NM_018690.3 Unigene Cluster for APOBR: Apolipoprotein B receptor Hs.200333 [show with all ESTs]Unigene Representative Sequence: NM_0186903 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000564831(uc002dqb.2 uc010byg.2) ENST00000328423 ENST00000431282
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for APOBR (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for APOBR
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: APOBR (NM_018690) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for APOBR | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat APOBR |
Additional cDNA sequence: AF141332.1 AF141334.1 AK025123.1 AK075085.1 BC119786.1 4 DOTS entries: DT.120696455 DT.102843689 DT.40210600 DT.91709689 24/33 AceView cDNA sequences (see all 33): AW874392 NM_018690 BV198208 CA307418 CA307455 BX644500 BM976428 AK025123 CD368319 AK075085 AF141334 AF141332 NM_182804 BX091811 BI029476 BG231934 BE902198 CB146818 AA348792 BI016391 BM988197 BG986011 BE538152 BI022728
GeneLoc Exon Structure
3 Alternative Splicing Database (ASD) splice patterns (SP) for APOBR About this scheme
| ExUns: | 1 | ^ | 2 | ^ | 3a | · | 3b | ^ | 4a | · | 4b | ^ | 5a | · | 5b | · | 5c |
|---|
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| SP1: | | | | | | | | | | | | | | | | | | | |
| SP2: | | | | | | | | | | | - | | - | | | | | | |
| SP3: | | | | | | | | | | | | | | | | | | |
ECgene alternative splicing isoforms for APOBR
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Expression
for APOBR gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| APOBR expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GAGCAGGCAA
About this image
See APOBR Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for APOBR
SOURCE GeneReport for Unigene cluster: Hs.200333
UniProtKB/Swiss-Prot: APOBR_HUMAN, Q0VD83Tissue specificity: Expressed in peripheral blood leukocytes > bone marrow = spleen > lymph node, and only faintlyvisible in appendix and thymus. Expressed in the brain, heart, kidney, liver, lung, pancreas, and placenta. Expressedprimarily by reticuloendothelial cells: monocytes, macrophages, and endothelial cells. Expressed in atheroscleroticlesion foam cells
SABiosciences Custom PCR Arrays for APOBR
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for APOBR
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat APOBR | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat APOBR | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat APOBR | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for APOBR |
Orthologs
for APOBR gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for APOBR gene from 2/7 species (see all 7) About this table
ENSEMBL Gene Tree for APOBR (if available)
TreeFam Gene Tree for APOBR (if available) |
Paralogs
for APOBR gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for APOBR gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 16 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for APOBR (28505970 - 28510291 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for APOBR: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing APOBR |
|
Disorders
/ Diseases
for APOBR gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
APOBR for disorders About GeneDecksing
OMIM gene information: 605220
OMIM disorders: --
4  diseases for APOBR: About MalaCardsfainting hypercholesterolemia atherosclerosis cholesterol
Export disorders for APOBR gene to outside databases
|
Publications
for APOBR gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for APOBR gene, integrated from 9 sources (see all 15):
(articles sorted by number of sources associating them with APOBR) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- A macrophage receptor for apolipoprotein B48: cloning, expression, and atherosclerosis. (PubMed id 10852956)1, 2, 3, 9 Brown M.L....Gianturco S.H. (2000)
- Association of nucleotide variations in the apolipoprotein B48 receptor gene (APOB48R) with hypercholesterolemia. (PubMed id 15830122)1, 2, 9 Fujita Y.... Emi M. (2005)
- Pitavastatin inhibits remnant lipoprotein-induced macrophage foam cell formation through ApoB48 receptor-dependent mechanism. (PubMed id 15591219)1, 2 Kawakami A....Yoshida M. (2005)
- PPAR(alpha) and PPAR(gamma) activators suppress the monocyte- macrophage apoB-48 receptor. (PubMed id 12700342)2, 9 Haraguchi G.... Bradley W.A. (2003)
- Triglyceride-rich lipoprotein regulates APOB48 recepto r gene expression in human THP-1 monocytes and macrophages. (PubMed id 22190030)1 Bermudez B....Muriana F.J. (2012)
- A high-fat meal promotes lipid-load and apolipoprotei n B-48 receptor transcriptional activity in circulating monocytes. (PubMed id 21367954)1 Varela L.M....Muriana F.J. (2011)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
- Antipeptide antibodies reveal interrelationships of MBP 200 and MBP 235: unique apoB-specific receptors for triglyceride-rich lipoproteins on human monocyte-macrophages. (PubMed id 10191299)2 Bradley W.A....Gianturco S.H. (1999)
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External Searches for APOBR gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing APOBR gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing APOBR gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing APOBR gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for APOBR gene:
Search GeneIP for patents involving APOBR
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for APOBR gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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variant library, vector shuttling | | | OriGene Custom Antibody Services for APOBR | | OriGene Custom Protein Services for APOBR | | | OriGene Custom Immunoassay Development | | |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat APOBR | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing APOBR | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat APOBR | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat APOBR | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat APOBR | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat APOBR |
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 | | | APOBR Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for APOBR |
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| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat APOBR |
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