Aliases for APOBEC3H Gene
Aliases for APOBEC3H Gene
- Apolipoprotein B MRNA Editing Enzyme Catalytic Subunit 3H 2 3 5
- Apolipoprotein B MRNA Editing Enzyme, Catalytic Polypeptide-Like 3H 2 3
- APOBEC-Related Protein 10 3 4
- ARP-10 3 4
- A3H 3 4
- Apolipoprotein B MRNA-Editing Enzyme Catalytic Polypeptide-Like 3H 4
- DNA DC->DU-Editing Enzyme APOBEC-3H 3
- EC 3.5.4.- 4
- Arp10 3
External Ids for APOBEC3H Gene
- HGNC: 24100
- Entrez Gene: 164668
- Ensembl: ENSG00000100298
- OMIM: 610976
- UniProtKB: Q6NTF7
Previous GeneCards Identifiers for APOBEC3H Gene
- GC22P037823
- GC22P039493
- GC22P022460
Summaries for APOBEC3H Gene
-
This gene encodes a member of the apolipoprotein B mRNA-editing enzyme catalytic polypeptide 3 family of proteins. The encoded protein is a cytidine deaminase that has antiretroviral activity by generating lethal hypermutations in viral genomes. Polymorphisms and alternative splicing in this gene influence its antiretroviral activity and are associated with increased resistence to human immunodeficiency virus type 1 infection in certain populations. Alternative splicing results in multiple transcript variants.[provided by RefSeq, Oct 2009]
GeneCards Summary for APOBEC3H Gene
APOBEC3H (Apolipoprotein B MRNA Editing Enzyme Catalytic Subunit 3H) is a Protein Coding gene. Diseases associated with APOBEC3H include Hiv-1. Among its related pathways are mRNA Editing- C to U Conversion and Gene Expression. GO annotations related to this gene include hydrolase activity and cytidine deaminase activity. An important paralog of this gene is AICDA.
UniProtKB/Swiss-Prot for APOBEC3H Gene
-
DNA deaminase (cytidine deaminase) which acts as an inhibitor of retrovirus replication and retrotransposon mobility via deaminase-dependent and -independent mechanisms. The A3H-var/haplotype 2 exhibits antiviral activity against vif-deficient HIV-1. After the penetration of retroviral nucleocapsids into target cells of infection and the initiation of reverse transcription, it can induce the conversion of cytosine to uracil in the minus-sense single-strand viral DNA, leading to G-to-A hypermutations in the subsequent plus-strand viral DNA. The resultant detrimental levels of mutations in the proviral genome, along with a deamination-independent mechanism that works prior to the proviral integration, together exert efficient antiretroviral effects in infected target cells. Selectively targets single-stranded DNA and does not deaminate double-stranded DNA or single- or double-stranded RNA. Exhibits antiviral activity also against T-cell leukemia virus type 1 (HTLV-1) and may inhibit the mobility of LTR and non-LTR retrotransposons.
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for APOBEC3H Gene
Genomics for APOBEC3H Gene
Regulatory Elements for APOBEC3H Gene
Enhancers for APOBEC3H Gene
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around APOBEC3H on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the APOBEC3H gene promoter:
Regulatory Element Products
Genomic Location for APOBEC3H Gene
- Chromosome:
- 22
- Start:
- 39,097,223 bp from pter
- End:
- 39,104,067 bp from pter
- Size:
- 6,845 bases
- Orientation:
- Plus strand
Genomic View for APOBEC3H Gene
Genes around APOBEC3H on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 22q13.1 by Ensembl
- 22q13.1 by Entrez Gene
- 22q13.1 by HGNC
APOBEC3H Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for APOBEC3H Gene
Proteins for APOBEC3H Gene
-
Protein details for APOBEC3H Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q6NTF7-ABC3H_HUMAN
- Recommended name:
- DNA dC->dU-editing enzyme APOBEC-3H
- Protein Accession:
- Q6NTF7
- B0QYP0
- B0QYP1
- B7TQM5
- E9PF38
- Q5JYL9
- Q6IC87
Protein attributes for APOBEC3H Gene
- Size:
- 200 amino acids
- Molecular mass:
- 23531 Da
- Cofactor:
- Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
- Quaternary structure:
-
- Interacts with AGO1, AGO2 and AGO3.
- Miscellaneous:
-
- APOBEC3H from old world monkeys has retained its antiviral activity, while it is lost in other primates.
- It is one of seven related genes or pseudogenes found in a cluster, thought to result from gene duplication, on chromosome 22.
Protein Expression for APOBEC3H Gene
Post-translational modifications for APOBEC3H Gene
Other Protein References for APOBEC3H Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
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-
Abcam antibodies for APOBEC3H
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-
Abcam proteins for APOBEC3H
Assay Products
No data available for DME Specific Peptides for APOBEC3H Gene
Domains & Families for APOBEC3H Gene
Gene Families for APOBEC3H Gene
Protein Domains for APOBEC3H Gene
Suggested Antigen Peptide Sequences for APOBEC3H Gene
Graphical View of Domain Structure for InterPro Entry
Q6NTF7- Family:
-
- Belongs to the cytidine and deoxycytidylate deaminase family.
Function for APOBEC3H Gene
Molecular function for APOBEC3H Gene
- UniProtKB/Swiss-Prot CatalyticActivity:
- Cytidine + H(2)O = uridine + NH(3).
- UniProtKB/Swiss-Prot EnzymeRegulation:
- Antiviral activity is neutralized by the HIV-1 virion infectivity factor (VIF), that prevents its incorporation into progeny virions by both inhibiting its translation and/or by inducing its ubiquitination and subsequent degradation by the 26S proteasome.
- UniProtKB/Swiss-Prot Function:
- DNA deaminase (cytidine deaminase) which acts as an inhibitor of retrovirus replication and retrotransposon mobility via deaminase-dependent and -independent mechanisms. The A3H-var/haplotype 2 exhibits antiviral activity against vif-deficient HIV-1. After the penetration of retroviral nucleocapsids into target cells of infection and the initiation of reverse transcription, it can induce the conversion of cytosine to uracil in the minus-sense single-strand viral DNA, leading to G-to-A hypermutations in the subsequent plus-strand viral DNA. The resultant detrimental levels of mutations in the proviral genome, along with a deamination-independent mechanism that works prior to the proviral integration, together exert efficient antiretroviral effects in infected target cells. Selectively targets single-stranded DNA and does not deaminate double-stranded DNA or single- or double-stranded RNA. Exhibits antiviral activity also against T-cell leukemia virus type 1 (HTLV-1) and may inhibit the mobility of LTR and non-LTR retrotransposons.
Enzyme Numbers (IUBMB) for APOBEC3H Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0003824 | catalytic activity | IEA | -- |
| GO:0004126 | cytidine deaminase activity | IDA | 16571802 |
| GO:0005515 | protein binding | IPI | 22915799 |
| GO:0008270 | zinc ion binding | IEA | -- |
| GO:0016787 | hydrolase activity | IEA | -- |
Phenotypes for APOBEC3H Gene
- GenomeRNAi human phenotypes for APOBEC3H:
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-
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- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
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Horizon Cell Lines for APOBEC3H
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Flow Cytometry Products
No data available for Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APOBEC3H Gene
Localization for APOBEC3H Gene
Subcellular locations from UniProtKB/Swiss-Prot for APOBEC3H Gene
- Nucleus. Cytoplasm. Cytoplasm, P-body. Note=Haplotype 1 is distributed in both the nucleus and cytoplasm, whereas haplotype 2 is predominantly cytoplasmic.
| Compartment | Confidence |
|---|---|
| nucleus | 5 |
| extracellular | 2 |
| mitochondrion | 2 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000932 | P-body | IDA | 22915799 |
| GO:0005634 | nucleus | IDA,IEA | 18779051 |
| GO:0005737 | cytoplasm | IEA,IDA | 18779051 |
Pathways & Interactions for APOBEC3H Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | mRNA Editing- C to U Conversion |
.82
|
|
| 2 | Gene Expression |
.48
|
|
Pathways by source for APOBEC3H Gene
4 Reactome pathways for APOBEC3H Gene
Interacting Proteins for APOBEC3H Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0002376 | immune system process | IEA | -- |
| GO:0009972 | cytidine deamination | IEA | -- |
| GO:0010529 | negative regulation of transposition | IMP | 18827027 |
| GO:0045087 | innate immune response | IEA | -- |
| GO:0045869 | negative regulation of single stranded viral RNA replication via double stranded DNA intermediate | IDA | 18779051 |
No data available for SIGNOR curated interactions for APOBEC3H Gene
Drugs & Compounds for APOBEC3H Gene
| Name | Synonyms | Role | CAS Number | PubChem IDs | PubMed IDs | |
|---|---|---|---|---|---|---|
| Ammonia |
|
7664-41-7 |
|
Transcripts for APOBEC3H Gene
mRNA/cDNA for APOBEC3H Gene
- (7) REFSEQ mRNAs :
- (9) Additional mRNA sequences :
- (25) Selected AceView cDNA sequences:
- (7) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for APOBEC3H Gene
- Apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H:
- Representative Sequences:
CRISPR Products
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miRNA Products
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Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for APOBEC3H
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- VectorBuilder custom plasmid, inducible vectors for APOBEC3H
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for APOBEC3H
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for APOBEC3H Gene
mRNA differential expression in normal tissues according to GTEx for APOBEC3H Gene
This gene is overexpressed in Whole Blood (x6.7).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for APOBEC3H Gene
NURSA nuclear receptor signaling pathways regulating expression of APOBEC3H Gene:
APOBEC3HSOURCE GeneReport for Unigene cluster for APOBEC3H Gene:
Hs.440515mRNA Expression by UniProt/SwissProt for APOBEC3H Gene:
Q6NTF7-ABC3H_HUMAN
Tissue specificity:
Expressed in lymphoid organs. Also detected in non-lymphoid tissues including lung, testis, ovary, fetal liver and skin.
Evidence on tissue expression from TISSUES for APOBEC3H Gene
- Nervous system(4)
Primer Products
-
OriGene qPCR primer pairs for APOBEC3H
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OriGene qPCR primer pairs and template standards for APOBEC3H
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for APOBEC3H Gene
Orthologs for APOBEC3H Gene
This gene was present in the common ancestor of mammals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | APOBEC3H 34 35 |
|
||
| dog (Canis familiaris) |
Mammalia | APOBEC3H 35 |
|
OneToOne | |
| cow (Bos Taurus) |
Mammalia | APOBEC3Z3 35 |
|
OneToOne | |
| mouse (Mus musculus) |
Mammalia | Apobec3 35 |
|
OneToOne |
- Species where no ortholog for APOBEC3H was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for APOBEC3H Gene
Paralogs for APOBEC3H Gene
(6) SIMAP similar genes for APOBEC3H Gene using alignment to 9 proteins:
Variants for APOBEC3H Gene
Polymorphic Variants from UniProtKB/Swiss-Prot for APOBEC3H Gene
- ABC3H_HUMAN-Q6NTF7
- There are at least 4 different haplotypes in the human population. The allele A3H-var/haplotype 2 encodes a more stable protein which is able to block HIV-1 replication. The displayed allele (haplotype 1) is unstable and inefficient to block HIV-1 replication.
| SNP ID | Clin | Chr 22 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000247179 | -- | 39,100,498(+) | ATACA(G/T)GAAAT | intron-variant | |
| rs1000653300 | -- | 39,101,752(+) | AAGGA(C/T)TGTGG | intron-variant | |
| rs1000750778 | -- | 39,096,533(+) | AGACG(A/G)AGTTT | upstream-variant-2KB | |
| rs1000762900 | -- | 39,097,695(+) | GGATG(A/T)TGGGA | intron-variant | |
| rs1000818144 | -- | 39,095,299(+) | AGCAC(C/T)ACAGT | upstream-variant-2KB |
Residual Variation Intolerance Score:
84.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
11.52;
92.96% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for APOBEC3H Gene
Disorders for APOBEC3H Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| hiv-1 |
|
|
Search APOBEC3H in MalaCards
View complete list of genes associated with diseases
Relevant External Links for APOBEC3H
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- APOBEC3H
No data available for UniProtKB/Swiss-Prot and Genatlas for APOBEC3H Gene
Publications for APOBEC3H Gene
- Adaptive evolution and antiviral activity of the conserved mammalian cytidine deaminase APOBEC3H. (PMID: 16571802) OhAinle M. … Emerman M. (J. Virol. 2006) 2 3 4 64
- APOBEC3G restricts HIV-1 to a greater extent than APOBEC3F and APOBEC3DE in human primary CD4+ t cells and macrophages. (PMID: 23097438) Chaipan C. … Pathak V.K. (J. Virol. 2013) 3 4 64
- APOBEC3A, APOBEC3B, and APOBEC3H haplotype 2 restrict human T- lymphotropic virus type 1. (PMID: 22457529) Ooms M. … Muenk C. (J. Virol. 2012) 3 4 64
- Retroelements versus APOBEC3 family members: No great escape from the magnificent seven. (PMID: 22912627) Arias J.F. … Tokunaga K. (Front. Microbiol. 2012) 3 4 64
- HIV-1 replication and APOBEC3 antiviral activity are not regulated by P bodies. (PMID: 22915799) Phalora P.K. … Malim M.H. (J. Virol. 2012) 3 4 64
Products for APOBEC3H Gene
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- Horizon Cell Lines for APOBEC3H
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- VectorBuilder custom plasmid, inducible vectors for APOBEC3H
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- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for APOBEC3H Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
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- (72) GenScript
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- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
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