Free for academic non-profit institutions. Other users need a Commercial license

Aliases for APOBEC3B-AS1 Gene

Subcategory (RNA class) for APOBEC3B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for APOBEC3B-AS1 Gene

  • APOBEC3B Antisense RNA 1 2 3 5
  • APOBEC3B Antisense RNA 1 (Non-Protein Coding) 2 3
  • CTA-150C2.16 3

External Ids for APOBEC3B-AS1 Gene

Previous GeneCards Identifiers for APOBEC3B-AS1 Gene

  • GC22M039388
  • GC22M039468
  • GC22M040103
  • GC22M039079
  • GC22M039827
  • GC22M039826
  • GC22M039938

Summaries for APOBEC3B-AS1 Gene

GeneCards Summary for APOBEC3B-AS1 Gene

APOBEC3B-AS1 (APOBEC3B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for APOBEC3B-AS1 Gene

Genomics for APOBEC3B-AS1 Gene

Regulatory Elements for APOBEC3B-AS1 Gene

Enhancers for APOBEC3B-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22F038966 1.1 FANTOM5 Ensembl ENCODE 12 +30.6 30620 2.8 CTCF HDAC1 ESRRA ATF1 TAL1 ZIC2 ZNF316 POLR2A ZNF547 NFE2 APOBEC3A GTPBP1 SUN2 APOBEC3B-AS1 JOSD1 DDX17 LOC105373033
GH22F038963 1.2 Ensembl ENCODE 12 +34.1 34071 1.5 HDGF KLF1 SAP130 KLF17 ARID4B CDC5L ZNF48 ZIC2 ZFHX2 GLIS2 APOBEC3B APOBEC3B-AS1 LOC105373033 APOBEC3A
GH22F038965 0.2 Ensembl 12 +33.0 33020 0.4 PKNOX1 GATA3 GLIS1 ZNF341 PRDM10 ZIC2 PRDM1 APOBEC3B-AS1 LOC105373033 APOBEC3A
GH22F038956 0.7 Ensembl 11.9 +39.9 39920 3.0 CTCF ESRRA ZNF493 YBX1 ZNF514 ZNF664 ZNF121 ZNF316 ZNF366 MAFK APOBEC3B TAB1 ENSG00000228274 CSNK1E APOBEC3B-AS1 CBY1 DNAL4 SUN2 ENSG00000230912 PICK1
GH22F038923 1 Ensembl ENCODE 11.7 +73.5 73520 3.0 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 FEZF1 ZNF2 YY1 SLC30A9 CBY1 ENSG00000230912 APOBEC3B NPTXR APOBEC3A CSNK1E APOBEC3B-AS1 DNAL4 SUN2 APOBEC3H
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around APOBEC3B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for APOBEC3B-AS1 Gene

Chromosome:
22
Start:
38,991,559 bp from pter
End:
38,998,220 bp from pter
Size:
6,662 bases
Orientation:
Minus strand

Genomic View for APOBEC3B-AS1 Gene

Genes around APOBEC3B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
APOBEC3B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APOBEC3B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APOBEC3B-AS1 Gene

Proteins for APOBEC3B-AS1 Gene

Post-translational modifications for APOBEC3B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for APOBEC3B-AS1 Gene

Domains & Families for APOBEC3B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for APOBEC3B-AS1 Gene

Function for APOBEC3B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APOBEC3B-AS1 Gene

Localization for APOBEC3B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for APOBEC3B-AS1 Gene

Pathways & Interactions for APOBEC3B-AS1 Gene

SuperPathways for APOBEC3B-AS1 Gene

No Data Available

Interacting Proteins for APOBEC3B-AS1 Gene

Gene Ontology (GO) - Biological Process for APOBEC3B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for APOBEC3B-AS1 Gene

Transcripts for APOBEC3B-AS1 Gene

mRNA/cDNA for APOBEC3B-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for APOBEC3B-AS1 Gene

No ASD Table

Relevant External Links for APOBEC3B-AS1 Gene

GeneLoc Exon Structure for
APOBEC3B-AS1
ECgene alternative splicing isoforms for
APOBEC3B-AS1

Expression for APOBEC3B-AS1 Gene

mRNA expression in normal human tissues for APOBEC3B-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for APOBEC3B-AS1 Gene

This gene is overexpressed in Whole Blood (x22.1).
genes like me logo Genes that share expression patterns with APOBEC3B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for APOBEC3B-AS1 Gene

Orthologs for APOBEC3B-AS1 Gene

Evolution for APOBEC3B-AS1 Gene

ENSEMBL:
Gene Tree for APOBEC3B-AS1 (if available)
TreeFam:
Gene Tree for APOBEC3B-AS1 (if available)

No data available for Orthologs for APOBEC3B-AS1 Gene

Paralogs for APOBEC3B-AS1 Gene

No data available for Paralogs for APOBEC3B-AS1 Gene

Variants for APOBEC3B-AS1 Gene

Sequence variations from dbSNP and Humsavar for APOBEC3B-AS1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1053813 -- 38,992,067(+) GTACC(A/G)CCAGG intron-variant, reference, missense
rs1065184 -- 38,991,553(+) GATTA(C/T)GACCC downstream-variant-500B, reference, synonymous-codon
rs11089916 -- 38,996,245(+) GGCTC(A/G)CCGGA intron-variant
rs111452698 -- 38,991,860(+) CTGGC(C/T)CAGAT intron-variant
rs111468681 -- 38,996,803(+) CCTCC(C/T)GAGTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for APOBEC3B-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv172n111 CNV deletion 26073780
dgv36n47 CNV loss 21111241
dgv4568n100 CNV loss 25217958
dgv4569n100 CNV loss 25217958
dgv4571n100 CNV loss 25217958
dgv770n67 CNV loss 20364138
dgv8106n54 CNV loss 21841781
dgv8107n54 CNV loss 21841781
dgv833e199 CNV deletion 23128226
esv2495318 CNV deletion 19546169
esv2604392 CNV loss 19546169
esv2724238 CNV deletion 23290073
esv2760711 CNV loss 21179565
esv2763703 CNV loss 21179565
esv28999 CNV loss 19812545
esv29947 CNV loss 18421352
esv33846 CNV gain+loss 17666407
esv3568392 CNV loss 25503493
esv3584501 CNV gain 24956385
esv3584781 CNV loss 24956385
esv3647746 CNV loss 21293372
esv3647747 CNV loss 21293372
esv3647748 CNV gain 21293372
esv3647751 CNV gain 21293372
nsv1055716 CNV loss 25217958
nsv1056597 CNV loss 25217958
nsv1061176 CNV gain+loss 25217958
nsv1144025 CNV deletion 24896259
nsv198 CNV deletion 15895083
nsv3627 CNV deletion 18451855
nsv472943 CNV novel sequence insertion 20440878
nsv482077 CNV gain 20164927
nsv589021 CNV loss 21841781
nsv589031 CNV loss 21841781
nsv829221 CNV loss 20364138
nsv834196 CNV loss 17160897
nsv964630 OTHER complex 23825009
nsv979675 CNV duplication 23825009
nsv9907 CNV loss 18304495
nsv9908 CNV loss 18304495

Relevant External Links for APOBEC3B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
APOBEC3B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for APOBEC3B-AS1 Gene

Disorders for APOBEC3B-AS1 Gene

Relevant External Links for APOBEC3B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
APOBEC3B-AS1

No disorders were found for APOBEC3B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for APOBEC3B-AS1 Gene

Publications for APOBEC3B-AS1 Gene

No publications were found for APOBEC3B-AS1 Gene.

Products for APOBEC3B-AS1 Gene

Sources for APOBEC3B-AS1 Gene

Content
Loading form....