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Aliases for APOBEC3B-AS1 Gene

Subcategory (RNA class) for APOBEC3B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for APOBEC3B-AS1 Gene

  • APOBEC3B Antisense RNA 1 2 3 5
  • APOBEC3B Antisense RNA 1 (Non-Protein Coding) 2 3
  • CTA-150C2.16 3

External Ids for APOBEC3B-AS1 Gene

Previous GeneCards Identifiers for APOBEC3B-AS1 Gene

  • GC22M039388
  • GC22M039468
  • GC22M040103
  • GC22M039079
  • GC22M039827
  • GC22M039826
  • GC22M039938
  • GC22M040626

Summaries for APOBEC3B-AS1 Gene

GeneCards Summary for APOBEC3B-AS1 Gene

APOBEC3B-AS1 (APOBEC3B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for APOBEC3B-AS1 Gene

Genomics for APOBEC3B-AS1 Gene

Regulatory Elements for APOBEC3B-AS1 Gene

Enhancers for APOBEC3B-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G038951 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.4 +44.8 44790 4.9 HDGF PKNOX1 ZNF2 GLIS2 ZNF766 ELK1 ZNF143 ZNF263 SP3 NFIL3 APOBEC3B SUN2 APOBEC3A GTPBP1 APOBEC3B-AS1 DNAL4 JOSD1 APOBEC3D DDX17 LOC105373033
GH22G038966 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12 +30.9 30872 2.0 HDAC1 PKNOX1 ATF1 TCF12 CREM SMARCA4 IKZF1 GLIS1 KDM1A ZNF18 APOBEC3A GTPBP1 SUN2 APOBEC3B-AS1 JOSD1 DDX17 LOC105373033
GH22G038869 1.6 FANTOM5 ENCODE dbSUPER 11.6 +126.1 126072 4.6 HDGF PKNOX1 ARNT WRNIP1 ZFP64 SIN3A ARID4B DMAP1 ZNF2 YY1 APOBEC3B-AS1 CBX6 ENSG00000235209 SUN2 APOBEC3G GTPBP1 JOSD1 APOBEC3H NPTXR
GH22G039204 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.8 -208.7 -208698 4.0 PKNOX1 ZSCAN4 KLF17 ZNF48 RARA EGR1 ZNF366 FOS EGR2 SMARCC1 FUNDC2P4 CBX7 PDGFB APOBEC3B-AS1 RPL3 MGAT3 GC22M041766 GC22M041308
GH22G039076 1.5 Ensembl ENCODE dbSUPER 11.1 -81.1 -81065 6.4 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A SLC30A9 ZNF263 MXD4 REST APOBEC3G APOBEC3B-AS1 LOC101927202
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around APOBEC3B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for APOBEC3B-AS1 Gene

Chromosome:
22
Start:
38,991,559 bp from pter
End:
38,998,220 bp from pter
Size:
6,662 bases
Orientation:
Minus strand

Genomic View for APOBEC3B-AS1 Gene

Genes around APOBEC3B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
APOBEC3B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APOBEC3B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APOBEC3B-AS1 Gene

Proteins for APOBEC3B-AS1 Gene

Post-translational modifications for APOBEC3B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for APOBEC3B-AS1 Gene

Domains & Families for APOBEC3B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for APOBEC3B-AS1 Gene

Function for APOBEC3B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APOBEC3B-AS1 Gene

Localization for APOBEC3B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for APOBEC3B-AS1 Gene

Pathways & Interactions for APOBEC3B-AS1 Gene

SuperPathways for APOBEC3B-AS1 Gene

No Data Available

Interacting Proteins for APOBEC3B-AS1 Gene

Gene Ontology (GO) - Biological Process for APOBEC3B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for APOBEC3B-AS1 Gene

Transcripts for APOBEC3B-AS1 Gene

mRNA/cDNA for APOBEC3B-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for APOBEC3B-AS1 Gene

No ASD Table

Relevant External Links for APOBEC3B-AS1 Gene

GeneLoc Exon Structure for
APOBEC3B-AS1
ECgene alternative splicing isoforms for
APOBEC3B-AS1

Expression for APOBEC3B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for APOBEC3B-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for APOBEC3B-AS1 Gene

This gene is overexpressed in Whole Blood (x22.1).
genes like me logo Genes that share expression patterns with APOBEC3B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for APOBEC3B-AS1 Gene

Orthologs for APOBEC3B-AS1 Gene

Evolution for APOBEC3B-AS1 Gene

ENSEMBL:
Gene Tree for APOBEC3B-AS1 (if available)
TreeFam:
Gene Tree for APOBEC3B-AS1 (if available)

No data available for Orthologs for APOBEC3B-AS1 Gene

Paralogs for APOBEC3B-AS1 Gene

No data available for Paralogs for APOBEC3B-AS1 Gene

Variants for APOBEC3B-AS1 Gene

Sequence variations from dbSNP and Humsavar for APOBEC3B-AS1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000222988 -- 38,995,426(+) TCTCT(C/G)TGCCT intron-variant
rs1000385414 -- 38,995,217(+) AGCCA(-/C)CCCCC intron-variant
rs1000557398 -- 38,996,533(+) AGAAG(G/T)TCCTG intron-variant
rs1000947215 -- 38,991,436(+) GTCAC(C/T)TGGTT downstream-variant-500B, reference, synonymous-codon
rs1003760315 -- 38,997,804(+) CTTCC(C/G)TCCCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for APOBEC3B-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv172n111 CNV deletion 26073780
dgv36n47 CNV loss 21111241
dgv4568n100 CNV loss 25217958
dgv4569n100 CNV loss 25217958
dgv4571n100 CNV loss 25217958
dgv770n67 CNV loss 20364138
dgv8106n54 CNV loss 21841781
dgv8107n54 CNV loss 21841781
dgv833e199 CNV deletion 23128226
esv2495318 CNV deletion 19546169
esv2604392 CNV loss 19546169
esv2724238 CNV deletion 23290073
esv2760711 CNV loss 21179565
esv2763703 CNV loss 21179565
esv28999 CNV loss 19812545
esv29947 CNV loss 18421352
esv33846 CNV gain+loss 17666407
esv3568392 CNV loss 25503493
esv3584501 CNV gain 24956385
esv3584781 CNV loss 24956385
esv3647746 CNV loss 21293372
esv3647747 CNV loss 21293372
esv3647748 CNV gain 21293372
esv3647751 CNV gain 21293372
nsv1055716 CNV loss 25217958
nsv1056597 CNV loss 25217958
nsv1061176 CNV gain+loss 25217958
nsv1144025 CNV deletion 24896259
nsv198 CNV deletion 15895083
nsv3627 CNV deletion 18451855
nsv472943 CNV novel sequence insertion 20440878
nsv482077 CNV gain 20164927
nsv589021 CNV loss 21841781
nsv589031 CNV loss 21841781
nsv829221 CNV loss 20364138
nsv834196 CNV loss 17160897
nsv964630 OTHER complex 23825009
nsv979675 CNV duplication 23825009
nsv9907 CNV loss 18304495
nsv9908 CNV loss 18304495

Relevant External Links for APOBEC3B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
APOBEC3B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for APOBEC3B-AS1 Gene

Disorders for APOBEC3B-AS1 Gene

Relevant External Links for APOBEC3B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
APOBEC3B-AS1

No disorders were found for APOBEC3B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for APOBEC3B-AS1 Gene

Publications for APOBEC3B-AS1 Gene

No publications were found for APOBEC3B-AS1 Gene.

Products for APOBEC3B-AS1 Gene

Sources for APOBEC3B-AS1 Gene

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