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Aliases for APOA1-AS Gene

Subcategory (RNA class) for APOA1-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for APOA1-AS Gene

  • APOA1 Antisense RNA 2 3 5

External Ids for APOA1-AS Gene

Previous GeneCards Identifiers for APOA1-AS Gene

  • GC00U934920

Summaries for APOA1-AS Gene

GeneCards Summary for APOA1-AS Gene

APOA1-AS (APOA1 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for APOA1-AS Gene

Genomics for APOA1-AS Gene

Regulatory Elements for APOA1-AS Gene

Enhancers for APOA1-AS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G117036 1.3 Ensembl ENCODE dbSUPER 10.5 +201.5 201536 1.5 ZNF146 INSM2 ZNF140 FEZF1 HIC1 ZNF121 ZNF366 SCRT2 ZNF600 TCF7L2 APOA1 LOC653303 ENSG00000224077 SIK3 TAGLN APOA1-AS APOC3 APOA4 PCSK7 RNF214
GH11G116860 1.1 ENCODE dbSUPER 12.2 +25.5 25536 1.8 PKNOX1 CBX3 RB1 ARID4B RAD21 ZNF766 GATA2 ZNF143 FOS CREM APOA1 LOC653303 APOA1-AS APOC3 APOA4 ENSG00000224077 SIK3 APOA5 ZPR1 PCSK7
GH11G116887 1.1 Ensembl ENCODE dbSUPER 11.7 +52.4 52354 2.2 FOXA2 CEBPA RCOR2 HNF4A RAD21 GABPA YY1 FOXA1 LOC653303 APOA1 APOA1-AS APOC3 APOA4 SIK3 ENSG00000224077 ENSG00000254678 PAFAH1B2 APOA5
GH11G117092 1.1 ENCODE dbSUPER 10.5 +257.0 257018 1.1 SOX13 FOXA2 SAP130 RAD21 RARA YY1 RERE NCOR1 NR2F6 IKZF2 APOA1 APOA1-AS APOC3 APOA4 PCSK7 RNF214 TAGLN SIK3 GC11M117070
GH11G116912 1 Ensembl ENCODE dbSUPER 11.2 +76.7 76715 1.6 EED IKZF1 ETV6 APOA1 ENSG00000224077 SIK3 APOA1-AS APOC3 APOA4 LOC653303 GC11P117017
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around APOA1-AS on UCSC Golden Path with GeneCards custom track

Promoters for APOA1-AS Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000045411 -17 201 HDGF ARID4B ZNF2 ZNF48 CBX5 ZNF143 ZNF207 REST ZNF610 SMARCA4

Genomic Location for APOA1-AS Gene

Chromosome:
11
Start:
116,836,117 bp from pter
End:
116,855,729 bp from pter
Size:
19,613 bases
Orientation:
Plus strand

Genomic View for APOA1-AS Gene

Genes around APOA1-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
APOA1-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APOA1-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APOA1-AS Gene

Proteins for APOA1-AS Gene

Post-translational modifications for APOA1-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for APOA1-AS Gene

Domains & Families for APOA1-AS Gene

Gene Families for APOA1-AS Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with APOA1-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for APOA1-AS Gene

Function for APOA1-AS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APOA1-AS Gene

Localization for APOA1-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for APOA1-AS Gene

Pathways & Interactions for APOA1-AS Gene

SuperPathways for APOA1-AS Gene

No Data Available

Interacting Proteins for APOA1-AS Gene

Gene Ontology (GO) - Biological Process for APOA1-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for APOA1-AS Gene

Drugs & Compounds for APOA1-AS Gene

No Compound Related Data Available

Transcripts for APOA1-AS Gene

mRNA/cDNA for APOA1-AS Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for APOA1-AS Gene

No ASD Table

Relevant External Links for APOA1-AS Gene

GeneLoc Exon Structure for
APOA1-AS
ECgene alternative splicing isoforms for
APOA1-AS

Expression for APOA1-AS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for APOA1-AS Gene

genes like me logo Genes that share expression patterns with APOA1-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for APOA1-AS Gene

Orthologs for APOA1-AS Gene

Evolution for APOA1-AS Gene

ENSEMBL:
Gene Tree for APOA1-AS (if available)
TreeFam:
Gene Tree for APOA1-AS (if available)

No data available for Orthologs for APOA1-AS Gene

Paralogs for APOA1-AS Gene

No data available for Paralogs for APOA1-AS Gene

Variants for APOA1-AS Gene

Sequence variations from dbSNP and Humsavar for APOA1-AS Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs121912716 Pathogenic 116,836,221(-) AGAAG(A/T)AGTGG nc-transcript-variant, reference, stop-gained
rs121912717 Pathogenic 116,835,948(-) CCACC(A/G)AGCAT upstream-variant-2KB, reference, missense
rs121912718 Pathogenic 116,836,134(-) TGCAC(A/C/G)AGCTG nc-transcript-variant, reference, missense
rs121912719 Pathogenic 116,836,112(-) GAGCC(C/G)ACTGG upstream-variant-2KB, reference, missense
rs121912720 Pathogenic 116,837,121(-) TGAAC(A/C/G)CCCCC intron-variant, reference, missense

Relevant External Links for APOA1-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
APOA1-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for APOA1-AS Gene

Disorders for APOA1-AS Gene

Relevant External Links for APOA1-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
APOA1-AS

No disorders were found for APOA1-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for APOA1-AS Gene

Publications for APOA1-AS Gene

  1. Regulation of the apolipoprotein gene cluster by a long noncoding RNA. (PMID: 24388749) Halley P. … Wahlestedt C. (Cell Rep 2014) 2 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for APOA1-AS Gene

Sources for APOA1-AS Gene

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