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Aliases & Descriptions for APLP2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases APPH 1 , 2 , 3 APPL2 2 , 3 CDEBP 2 , 3
Descriptions Amyloid protein homolog 3 CDEI box-binding protein 3 amyloid beta (A4) precursor-like protein 2 2 amyloid beta precursor-like protein 2 1 amyloid precursor protein homolog HSD-2 2
Search outside databases for aliases for APLP2 genePrevious GC identifers: GC11P131940 GC11P131452 GC11P129973 GC11P129477
Summaries for APLP2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: APLP2_HUMAN, Q06481 Function : May play a role in the regulation of hemostasis. The soluble form may have inhibitoryproperties towards coagulation factors. May interact with cellular G-protein signaling pathways.May bind to the DNA 5'-GTCACATG-3'(CDEI box). Inhibits trypsin, chymotrypsin, plasmin, factor XIAand plasma and glandular kallikrein
Gene Wiki entry for APLP2
Genomic Location for APLP2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the APLP2 gene Entrez Gene cytogenetic band: 11q23-q25|11q24 Ensembl cytogenetic band: 11q24.3 HGNC cytogenetic band: 11q24 APLP2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11P129445:
(about GC identifiers )
Start:
129,445,011 bp from pter
End:
129,519,910 bp from pter
Size:
74,900 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000011.8 NT_033899.7 Proteins for APLP2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: APLP2_HUMAN, Q06481 (See
protein sequence )Recommended Name: Amyloid-like protein 2 precursor Size : 763 amino acids; 86956 Da
Subunit : Interacts with CPEB1 (By similarity)
Subcellular location : Cell membrane; Single-pass type I membrane protein (Potential). Nucleus(Potential)
Secondary accessions : Q13861 Q14594 Q14662 Q71U10 Q7M4L3 Q9BT36Alternative splicing : 5 isoforms : Q06481-1 Q06481-2 Q06481-3 Q06481-4 Q06481-5 (Additional isoforms seem to exist)
Post-translational modifications:
The BPTI/Kunitz inhibitor domain is O-glycosylated1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (4 alternative transcripts):
NP_001135748.1 NP_001135749.1 NP_001135750.1 NP_001633.1 ENSEMBL proteins: ENSP00000263574 ENSP00000278756 ENSP00000345444 ENSP00000263575 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for APLP2: Assays for APLP2:
Protein
Domains/ Families for APLP2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q06481 ProtoNet protein and cluster: Q06481
2 Blocks protein families : IPB002223 Pancreatic trypsin inhibitor (Kunitz) IPB008155 Amyloidogenic glycoprotein (Amyloid A4) UniProtKB/Swiss-Prot: APLP2_HUMAN, Q06481 Similarity : Belongs to the APP familySimilarity : Contains 1 BPTI/Kunitz inhibitor domain
Gene Function for APLP2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 7 ): NM_001642 Applied Biosystems Silencer ® siRNAs for APLP2 Sigma-Aldrich siRNA and siRNA Panels for APLP2 Sigma-Aldrich shRNA for APLP2 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_001142276                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_001142276                                  untagged cDNA clones in CMV expression vector (see all 5 ): BC004371  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001642 UniProtKB/Swiss-Prot: APLP2_HUMAN, Q06481 Function : May play a role in the regulation of hemostasis. The soluble form may have inhibitoryproperties towards coagulation factors. May interact with cellular G-protein signaling pathways.May bind to the DNA 5'-GTCACATG-3'(CDEI box). Inhibits trypsin, chymotrypsin, plasmin, factor XIAand plasma and glandular kallikrein
Genatlas biochemistry entry for APLP2 :amyloid beta (A4) precursor protein-like 2
9 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Aplp2) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for APLP2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for APLP2 5/20 Interacting proteins for APLP2 (Q06481 1 , 2 ENSP00000263574 3 ) via UniProtKB, MINT, and/or STRING (see all 20
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0007186 G-protein coupled receptor protein signaling pathway
NAS 8220435
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Drugs & Compounds for APLP2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for APLP2 4 Novoseek chemical compound relationships for APLP2 gene
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Transcripts for APLP2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 7 ): NM_001642 Sigma-Aldrich siRNA and siRNA Panels for APLP2 Sigma-Aldrich shRNA for APLP2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001142276 NM_001142277 NM_001142278 NM_001642
REFSEQ mRNAs for APLP2 gene (4 alternative transcripts): NM_001142276.1 NM_001142277.1 NM_001142278.1 NM_001642.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001142276 NM_001142277 NM_001142278 NM_001642
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_001142276                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_001142276                                  untagged cDNA clones in CMV expression vector (see all 5 ): BC004371  
Additional cDNA sequence: AF086183.1 AF168956.1 AK056883.1 AK122834.1 AK124457.1 AK128162.1 AK225283.1 AK296765.1 AK300378.1 AK304736.1 AK308248.1 AK308932.1 BC000373.2 BC004371.1 BX647107.1 CR602481.1 L09209.1 L19597.1 L23113.1 L23114.1 L27631.1 S60099.1 Z22572.1
24/77 DOTS entries (see all 77
): DT.100892323 DT.95306989 DT.451432 DT.40114693 DT.100892329 DT.95307013 DT.95306982 DT.85101610 DT.120726827 DT.100892291 DT.120726695 DT.100892277 DT.120726848 DT.95306907 DT.91772974 DT.95219600 DT.86995872 DT.99964200 DT.92028755 DT.100892292 DT.100892333 DT.97863919 DT.101985416 DT.95351011
24/2055 AceView cDNA sequences (see all 2055
):BE218694 BM819166 AW881306 AI085801 CA843771 BF847973 L19597 AI597629 BM832783 AI097140 H84593 BM667881 BQ267446 AA975058 BM786026 BQ127969 AI298842 BQ021043 BP356517 CB107722 AA862998 W60398 AI268602 AA721978
highest scoring ESTs for APLP2 :S60099 AA009750 AA010590 AA013198 AA022510 AA022629 AA022777 AA023027 AA025468 AA025664
Unigene Cluster for APLP2: Amyloid beta (A4) precursor-like protein 2 Hs.709184 [show with all ESTs ] Unigene Representative Sequence: BX647107 GeneLoc Exon Structure 5/7 Alternative Splicing Database (ASD) splice patterns (SP) for APLP2 (see all 7
) ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14a · 14b ^ 15a · 15b · 15c · 15d · 15e SP1 :       -     -                 -     -     -               SP2 :                         -   -     -     -               SP3 :                               -     -               SP4 :                                                 SP5 :                                   -              
About this scheme ECgene alternative splicing isoforms for APLP2 4 Ensembl transcripts including schematic representations : ENST00000263574
ENST00000278756
ENST00000338167
ENST00000345598
Expression for APLP2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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APLP2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for APLP2 1 / 2 / 3
13 probe-sets matching APLP2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TCTCTACCCASOURCE GeneReport for Unigene cluster: Hs.709184 Expression variation in blood from EXPOLDB for APLP2
UniProtKB/Swiss-Prot: APLP2_HUMAN, Q06481 Tissue specificity : In placenta, brain, heart, lung, liver, kidney and endothelial tissues
Orthologs for APLP2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for APLP2 gene from 5/10 species (see all 10
)
About this table Species with no ortholog for APLP2 ENSEMBL Gene Tree for APLP2 Paralogs for APLP2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for APLP2 gene APP 2 APLP1 2
SNPs/Variants for APLP2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for APLP2 (up to first 250kb)
Disorders & Mutations for APLP2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 104776 5 Novoseek disease relationships for APLP2 gene
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Medical News for APLP2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for APLP2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/111 PubMed articles for APLP2 gene (see all 111
): A human amyloid precursor-like protein is highly homologous to a mouse sequence-specific DNA-binding protein. (PubMed id 7702756) 1, 3, 4 von der Kammer H.... Scheit K.H. (1994) Isolation and characterization of APLP2 encoding a homologue of the Alzheimer's associated amyloid beta protein precursor. (PubMed id 8220435) 1, 3, 4 Wasco W.... Tanzi R.E. (1993) Assignment of amyloid-precursor-like protein 2 gene (APLP2) to 11q24 by fluorescent in situ hybridization. (PubMed id 10702673) 1, 2, 3 Leach R....Krawetz S.A. (1999) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Molecular cloning of the cDNA for a human amyloid precursor protein homolog: evidence for a multigene family. (PubMed id 8485127) 3, 4 Sprecher C.A.... Foster D.C. (1993) Specificity of amyloid precursor-like protein 2 interactions with MHC class I molecules. (PubMed id 18452037) 1, 3 Tuli A....Solheim J.C. (2008) A role for MAP kinase in regulating ectodomain shedding of APLP2 in corneal epithelial cells. (PubMed id 11443060) 1, 3 Xu K.P....Yu F.S. (2001) Post-translational processing and turnover kinetics of presynaptically targeted amyloid precursor superfamily proteins in the central nervous system. (PubMed id 9556595) 1, 3 Lyckman A.W....Moya K.L. (1998) Amyloid precursor-like protein 2 increases the endocytosis, instability, and turnover of the H2-K(d) MHC class I molecule. (PubMed id 18641335) 1, 3 Tuli A....Solheim J.C. (2008) CDEBP, a site-specific DNA-binding protein of the 'APP-like' family, is required during the early development of the mouse. (PubMed id 7539437) 1, 3 Blangy A....Rassoulzadegan M. (1995)
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Genome Databases showing APLP2
(According to
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AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing APLP2
(According to HUGE )
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Specialized Databases showing APLP2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for APLP2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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