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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

APLF Gene

protein-coding   GIFtS: 47
GCID: GC02P068694

aprataxin and PNKP like factor

(Previous name: chromosome 2 open reading frame 13 )
(Previous symbol: C2orf13)
 Explore 5 diseases affiliated with
APLF via our new
 Human Malady Compendium 
Biological research products
for APLF
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Aprataxin And PNKP Like Factor1 2     MGC477991
C2orf131 2 3 5     Chromosome 2 Open Reading Frame 131
Xip11 2     Aprataxin And PNK-Like Factor2
Apurinic-Apyrimidinic Endonuclease APLF2 3     Aprataxin- And PNK-Like Factor2
PALF2 3     PNK And APTX-Like FHA Protein2
PNK And APTX-Like FHA Domain-Containing Protein2 3     EC 4.2.99.183
XRCC1-Interacting Protein 12 3     XIP13
APFL2 5     

External Ids:    HGNC: 287241   Entrez Gene: 2005582   Ensembl: ENSG000001696217   OMIM: 6110355   UniProtKB: Q8IW193   

Export aliases for APLF gene to outside databases

Previous GC identifers: GC02P068548 GC02P068431


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for APLF:
C2ORF13 is a component of the cellular response to chromosomal DNA single- and double-strand breaks (Iles et al., 2007
(PubMed 17353262)).(supplied by OMIM, Mar 2008)

UniProtKB/Swiss-Prot: APLF_HUMAN, Q8IW19
Function: Nuclease involved in single-strand and double-strand DNA break repair. Recruited to sites of DNA damage
through interaction with poly(ADP-ribose), a polymeric post-translational modification synthesized transiently at
sites of chromosomal damage to accelerate DNA strand break repair reactions. Displays apurinic-apyrimidinic (AP)
endonuclease and 3'-5' exonuclease activities in vitro. Also able to introduce nicks at hydroxyuracil and other types
of pyrimidine base damage




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000002.11  NC_018913.1  NT_022184.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the APLF gene promoter:
         E2F-4   E2F-3a   E2F-5   Pax-5   HSF1 (long)   E2F-2   AP-2gamma   E2F   E2F-1   HSF1short   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for APLF

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat APLF


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2p13.3   Ensembl cytogenetic band:  2p13.3   HGNC cytogenetic band: 2p14

APLF Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
APLF gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02P068694:  view genomic region     (about GC identifiers)

Start:
68,694,691 bp from pter      End:
68,858,004 bp from pter
Size:
163,314 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: APLF_HUMAN, Q8IW19 (See protein sequence)
Recommended Name: Aprataxin and PNK-like factor  
Size: 511 amino acids; 56956 Da
Subunit: Interacts with LIG4, PARP1, XRCC1, XRCC4 and XRCC5
Subcellular location: Nucleus. Cytoplasm, cytosol. Note=Localizes to DNA damage sites. Accumulates at single-strand
breaks and double-strand breaks via the PBZ-type zinc fingers
Sequence caution: Sequence=AAY14945.1; Type=Erroneous initiation;
5 PDB 3D structures from and Proteopedia for APLF:
2KQB (3D)        2KQC (3D)        2KQD (3D)        2KQE (3D)        2KUO (3D)    
Secondary accessions: A8K476 Q53P47 Q53PB9 Q53QU0

Explore the universe of human proteins at neXtProt for APLF: NX_Q8IW19

Post-translational modifications:

  • Poly-ADP-ribosylated. In addition to binding non covalently poly(ADP-ribose) via its PBZ-type zinc fingers, the protein
  • is also covalently poly-ADP-ribosylated by PARP11
  • Phosphorylated in an ATM-dependent manner upon double-strand DNA break1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q8IW19

  • APLF Protein expression data from MOPED and PaxDb:    About this image 
    APLF Protein Expression
    REFSEQ proteins: NP_775816.1  
    ENSEMBL proteins: 
     ENSP00000307004   ENSP00000432297   ENSP00000393403  

    Human Recombinant Protein Products for APLF: 
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    Novus Biologicals APLF Lysate
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for APLF

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA17396150
    GO:0005829cytosol IEA--

    APLF for ontologies           About GeneDecksing



    APLF Antibody Products: 
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    Uscn ELISAs and CLIAs for APLF


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    APLF for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR008984 SMAD_FHA_domain
     IPR000253 FHA_dom
     IPR019406 Znf_C2H2_APLF-like

    Graphical View of Domain Structure for InterPro Entry Q8IW19

    ProtoNet protein and cluster: Q8IW19

    UniProtKB/Swiss-Prot: APLF_HUMAN, Q8IW19
    Domain: The PBZ-type zinc fingers (also named CYR) mediate non-covalent poly(ADP-ribose)-binding.
    Poly(ADP-ribose)-binding is dependent on the presence of zinc and promotes its recruitment to DNA damage sites
    Domain: The FHA-like domain mediates interaction with XRCC1 and XRCC4
    Similarity: Belongs to the APLF family
    Similarity: Contains 1 FHA-like domain
    Similarity: Contains 2 PBZ-type zinc fingers


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: APLF_HUMAN, Q8IW19
    Function: Nuclease involved in single-strand and double-strand DNA break repair. Recruited to sites of DNA damage
    through interaction with poly(ADP-ribose), a polymeric post-translational modification synthesized transiently at
    sites of chromosomal damage to accelerate DNA strand break repair reactions. Displays apurinic-apyrimidinic (AP)
    endonuclease and 3'-5' exonuclease activities in vitro. Also able to introduce nicks at hydroxyuracil and other types
    of pyrimidine base damage
    Catalytic activity: The C-O-P bond 3' to the apurinic or apyrimidinic site in DNA is broken by a beta-elimination
    reaction, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate

         Enzyme Number (IUBMB): EC 4.2.99.181

         Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000166nucleotide binding IDA18172500
    GO:0003906DNA-(apurinic or apyrimidinic site) lyase activity IDA17396150
    GO:0004520endodeoxyribonuclease activity IDA17396150
    GO:0005515protein binding IPI17353262
    GO:00084083'-5' exonuclease activity IDA17396150
         
    APLF for ontologies           About GeneDecksing


    Phenotypes:
         2 GenomeRNAi human phenotypes for APLF:
     Decreased POU5F1-GFP protein e  Increased gamma-H2AX phosphory 

         4 MGI mutant phenotypes (inferred from 1 allele(MGI details for Aplf):
     cellular  hematopoietic system  homeostasis/metabolism  immune system 

    APLF for phenotypes           About GeneDecksing

    Animal Models:
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for APLF 

    miRNA
    Products:
        
    OriGene 3'-UTR Clone: APLF
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat APLF
    8/15 QIAGEN miScript miRNA Assays for microRNAs that regulate APLF (see all 15):
    hsa-miR-3200-5p hsa-miR-3938 hsa-miR-222* hsa-miR-561 hsa-miR-548e hsa-miR-3065-5p hsa-miR-452* hsa-miR-888
    SwitchGear 3'UTR luciferase reporter plasmidAPLF 3' UTR sequence
    Inhib. RNA
    Products:
        
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for APLF
    OriGene shRNA RFP: APLF
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    Sirion Biotech Custom design and validation of potent shRNA sequences against APLF 

    Gene Editing
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    Clone
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    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for APLF (see all 3)
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    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: APLF (NM_173545)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for APLF
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat APLF 

    Cell Line
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    Sirion Biotech Customized inducible overexpressing cell line services for APLF

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for APLF


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for APLF

    STRING Interaction Network Preview (showing 5 interactants - click image to see 18)

    5/19 Interacting proteins for APLF (Q8IW191, 2, 3 ENSP000003070044) via UniProtKB, MINT, STRING, and/or I2D (see all 19)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    XRCC5P130102, 3MINT-4790250 MINT-4790124 MINT-4790303 I2D: score=2 
    PARP2Q9UGN52, 3, ENSP000002504164MINT-8201875 I2D: score=1 STRING: ENSP00000250416
    PARP1P098742, 3, ENSP000003557594MINT-4790102 MINT-4790124 MINT-4790085 I2D: score=2 STRING: ENSP00000355759
    XRCC1P188871, 2, 3, ENSP000002628874EBI-1256044,EBI-947466 MINT-4790124 I2D: score=2 STRING: ENSP00000262887
    XRCC4Q134262, 3, ENSP000003420114MINT-4790284 I2D: score=3 STRING: ENSP00000342011
    About this table

    Gene Ontology (GO): 3 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000012single strand break repair IMP17396150
    GO:0006302double-strand break repair IMP17396150
    GO:0006974response to DNA damage stimulus IDA17396150

    APLF for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for APLF
    Search CenterWatch for drugs/clinical trials and news about APLF 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for APLF gene: 
    NM_173545.2  

    Unigene Cluster for APLF:

    Aprataxin and PNKP like factor
    Hs.720369  [show with all ESTs]
    Unigene Representative Sequence: NM_173545
    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000303795(uc010fdf.2 uc002sep.3) ENST00000529851(uc002ser.1)
    ENST00000445692 ENST00000471727(uc002seq.1) ENST00000488585

    miRNA
    Products:
         
    OriGene 3'-UTR Clone: APLF
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat APLF
    8/15 QIAGEN miScript miRNA Assays for microRNAs that regulate APLF (see all 15):
    hsa-miR-3200-5p hsa-miR-3938 hsa-miR-222* hsa-miR-561 hsa-miR-548e hsa-miR-3065-5p hsa-miR-452* hsa-miR-888
    SwitchGear 3'UTR luciferase reporter plasmidAPLF 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for APLF
    OriGene shRNA RFP: APLF
    OriGene siRNA: APLF
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat APLF
    Sirion Biotech Custom design and validation of potent shRNA sequences against APLF 
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for APLF (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for APLF (see all 2)
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: APLF (NM_173545)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for APLF
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat APLF 
    Primer
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    Browse OriGene validated miRNA SYBR primer pairs
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat APLF
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat APLF

    Additional cDNA sequence: 

    AK290841.1 AK308186.1 BC030711.2 BC041144.1 

    5 DOTS entries:

    DT.40302033  DT.99938588  DT.110356  DT.101976854  DT.75120939 

    24/53 AceView cDNA sequences (see all 53):

    BQ226540 BX097685 AB084080 BQ342492 BC041144 AA677105 BG188837 NM_173545 
    NM_138964 AY089976 BQ342499 CD636589 BE936053 CD636591 H64244 AK122915 
    BX113242 BE464826 CD636587 R92039 AW418755 BX116921 BG719407 AI814997 

    GeneLoc Exon Structure

    3 Alternative Splicing Database (ASD) splice patterns (SP) for APLF    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13 ^ 14a · 14b
    SP1:                                      -     -     -                             -               
    SP2:                                                  -                                             
    SP3:                                                                                                


    ECgene alternative splicing isoforms for APLF

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    APLF expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GTAGCTGCTT
    APLF Expression
    About this image
    See APLF Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for APLF

    SOURCE GeneReport for Unigene cluster: Hs.720369
        SABiosciences Custom PCR Arrays for APLF

    Primer
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    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat APLF
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for APLF

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for APLF gene from 5/16 species (see all 16)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Aplf1 , 5 aprataxin and PNKP like factor1, 5 74.71(n)1
    61.57(a)1
      6 (38.52 cM)5
    721031  NM_001170489.11  NP_001163960.11 
     876284295 
    chicken
    (Gallus gallus)
    Aves APLF1 aprataxin and PNKP like factor 58.11(n)
    49.08(a)
      421264  XM_419335.3  XP_419335.3 
    lizard
    (Anolis carolinensis)
    Reptilia APLF6
    --
    36(a)
    1 ↔ 1
    1(126748968-126774056)
    zebrafish
    (Danio rerio)
    Actinopterygii FP245518.16
    --
    33(a)
    1 ↔ 1
    1(52126311-52147697)
    fruit fly
    (Drosophila melanogaster)
    Insecta CG61716
    --
    24(a)
    1 ↔ 1
    3R(11188514-11189653)


    ENSEMBL Gene Tree for APLF (if available)
    TreeFam Gene Tree for APLF (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1920 NCBI SNPs in APLF are shown (see all 1920    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 2 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1820085281,2
    --68692705(+) TTTTAC/TGGAGA 2 -- us2k1 int10--------
    rs728350301,2
    --68692819(+) ATACCC/TGGTAC 2 -- us2k1 int10--------
    rs1134475331,2
    --68692882(+) TTGTTG/TTACAT 2 -- us2k1 int11Minor allele frequency- T:0.50CSA 2
    rs285046171,2
    C,F,H--68693025(+) ACTATC/TTGAAA 2 -- us2k1 int13Minor allele frequency- T:0.01NS NA 342
    rs792830161,2
    F--68693122(+) TGAAGC/TTATCC 2 -- int1 us2k11Minor allele frequency- T:0.03WA 118
    rs1862407901,2
    --68693351(+) CTTTTA/GTATAT 2 -- ut51 us2k10--------
    rs1882589671,2
    --68693553(+) TGATCC/GAGATT 2 -- us2k1 ut510--------
    rs1446902081,2
    --68693687(+) CCCCTC/TCCACC 2 -- us2k1 int10--------
    rs1807871721,2
    --68693742(+) CTCACA/GTTAGG 2 -- us2k1 int10--------
    rs1485250981,2
    --68693744(+) CACATG/TAGGAA 2 -- int1 us2k10--------

    HapMap Linkage Disequilibrium report for APLF (68694691 - 68858004 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 6 variations for APLF
         5 CNVs: 97876 97877 89709 89708 78585
         1 Indel: 11176

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    APLF for disorders           About GeneDecksing

    OMIM gene information: 611035    OMIM disorders: --

    5 diseases for APLF:    About MalaCards
    junctional epidermolysis bullosa    epidermolysis bullosa    pleurisy    thyroid cancer
    thyroiditis

    2 diseases from the University of Copenhagen DISEASES database for APLF:
    Degenerative disc disease     Junctional epidermolysis bullosa

    Export disorders for APLF gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for APLF gene, integrated from 9 sources (see all 21):
    (articles sorted by number of sources associating them with APLF)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. APLF (C2orf13) is a novel component of poly(ADP-ribose) signaling in mammalian cells. (PubMed id 18474613)1, 2, 3 Rulten S.L.... Caldecott K.W. (2008)
    2. APLF (C2orf13) facilitates nonhomologous end-joining and undergoes ATM-dependent hyperphosphorylation following ionizing radiation. (PubMed id 18077224)1, 2, 3 Macrae C.J.... Koch C.A. (2008)
    3. APLF (C2orf13) is a novel human protein involved in the cellular response to chromosomal DNA strand breaks. (PubMed id 17353262)1, 2, 3 Iles N.... Caldecott K.W. (2007)
    4. Solution structures of the two PBZ domains from human APLF and their interaction with poly(ADP-ribose). (PubMed id 20098424)1, 2 Eustermann S....Neuhaus D. (2010)
    5. Poly(ADP-ribose)-binding zinc finger motifs in DNA repair/checkpoint proteins. (PubMed id 18172500)1, 2 Ahel I....West S.C. (2008)
    6. Human Xip1 (C2orf13) is a novel regulator of cellular responses to DNA strand breaks. (PubMed id 17507382)1, 2 Bekker-Jensen S.... Mailand N. (2007)
    7. A novel human AP endonuclease with conserved zinc-finger-like motifs involved in DNA strand break responses. (PubMed id 17396150)1, 2 Kanno S....Yasui A. (2007)
    8. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)1, 2 Hillier L.W....Wilson R.K. (2005)
    9. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    10. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 200558 HGNC: 28724 AceView: GPR73andC2orf13 Ensembl:ENSG00000169621 euGenes: HUgn200558
    ECgene: APLF H-InvDB: APLF

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for APLF Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for APLF gene:
    Search GeneIP for patents involving APLF

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013 , 14 May 2013

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