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Aliases & Descriptions for BIRC3
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases AIP1 2 API2 2 , 3 C-IAP2 3 CIAP2 2 HAIP1 2 HIAP-1 3 HIAP1 2 , 3 IAP1 3 MALT2 1 , 2 MIHC 1 , 2 , 3 RNF49 1 , 2 , 3 cIAP2 1 hiap-1 1
Descriptions Apoptosis inhibitor 2 2 , 3 IAP homolog C 3 Inhibitor of apoptosis protein 1 2 , 3 RING finger protein 49 3 TNFR2-TRAF signaling complex protein 2 TNFR2-TRAF-signaling complex protein 1 3 baculoviral IAP repeat-containing 3 2 baculoviral IAP repeat-containing protein 3 2 mammalian IAP homolog C 2
Search outside databases for aliases for BIRC3 genePrevious GC identifers: GC11P104381 GC11P103545 GC11P102222 GC11P101725
Summaries for BIRC3 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for BIRC3 : The protein encoded by this gene is a member of a family of proteins that inhibits apoptosis bybinding to tumor necrosis factor receptor-associated factors TRAF1 and TRAF2, probably byinterfering with activation of ICE-like proteases. The encoded protein inhibits apoptosis inducedby serum deprivation but does not affect apoptosis resulting from exposure to menadione, a potentinducer of free radicals. The amino acid sequence predicts three baculovirus IAP repeat domainsand a ring finger domain. Transcript variants encoding the same isoform have been identified.[provided by RefSeq] UniProtKB/Swiss-Prot: BIRC3_HUMAN, Q13489 Function : Apoptotic suppressor. The BIR motifs region interacts with TNF receptor associatedfactors 1 and 2 (TRAF1 and TRAF2) to form an heteromeric complex, which is then recruited to thetumor necrosis factor receptor 2 (TNFR2)
Gene Wiki entry for BIRC3 (Baculoviral_IAP_repeat-containing_protein_3)
Genomic Location for BIRC3
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the BIRC3 gene Entrez Gene cytogenetic band: 11q22 Ensembl cytogenetic band: 11q22.2 HGNC cytogenetic band: 11q22 BIRC3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11P101693:
(about GC identifiers )
Start:
101,693,404 bp from pter
End:
101,713,675 bp from pter
Size:
20,272 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000011.8 NT_033899.7 Proteins for BIRC3
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: BIRC3_HUMAN, Q13489 (See
protein sequence )Recommended Name: Baculoviral IAP repeat-containing protein 3 Size : 604 amino acids; 68372 Da
Subunit : Interacts with SMAC and with PRSS25; these interactions inhibit apoptotic suppressoractivity
Subcellular location : Cytoplasm (Potential)
PDB structures from and Proteopedia : 2UVL (3D)
 3EB5 (3D)
 3EB6 (3D)
 
Secondary accessions : Q16628 Q9HC27 Q9UP46
REFSEQ proteins (2 alternative transcripts):
NP_001156.1 NP_892007.1 ENSEMBL proteins: ENSP00000376897 ENSP00000263464 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: BIRC3 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for BIRC3: Assays for BIRC3:
Protein
Domains/ Families for BIRC3(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q13489 ProtoNet protein and cluster: Q13489
3 Blocks protein families : IPB001315 CARD interaction domain IPB001370 Baculovirus inhibitor of apoptosis protein repeat (BIR) IPB001841 Zn-finger UniProtKB/Swiss-Prot: BIRC3_HUMAN, Q13489 Similarity : Belongs to the IAP familySimilarity : Contains 3 BIR repeatsSimilarity : Contains 1 CARD domainSimilarity : Contains 1 RING-type zinc finger
Gene Function for BIRC3
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_182962 Applied Biosystems Silencer ® siRNAs for BIRC3 Sigma-Aldrich siRNA and siRNA Panels for BIRC3 Sigma-Aldrich shRNA Panels and shRNA for BIRC3 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001165                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001165                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001165  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001165 UniProtKB/Swiss-Prot: BIRC3_HUMAN, Q13489 Function : Apoptotic suppressor. The BIR motifs region interacts with TNF receptor associatedfactors 1 and 2 (TRAF1 and TRAF2) to form an heteromeric complex, which is then recruited to thetumor necrosis factor receptor 2 (TNFR2)
2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Birc3) :4 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for BIRC3
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/6 Sigma-Aldrich "Your Favorite Gene" Pathways for BIRC3 (Your Favorite Gene powered by Ingenuity) (see all 6
) Gene Network CentralTM Interacting Genes and Proteins Network for BIRC3 5/76 Interacting proteins for BIRC3 (ENSP00000263464 3 Q13489 1 ) via UniProtKB, MINT, and/or STRING (see all 76
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for BIRC3 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for BIRC3 10 Novoseek chemical compound relationships for BIRC3 gene
About this table 2 PharmGKB drug compound relationships for BIRC3 gene About this table
Transcripts for BIRC3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
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RNAi Products from Invitrogen ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_182962 Sigma-Aldrich siRNA and siRNA Panels for BIRC3 Sigma-Aldrich shRNA Panels and shRNA for BIRC3 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001165 NM_182962
REFSEQ mRNAs for BIRC3 gene (2 alternative transcripts): NM_001165.3 NM_182962.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001165 NM_182962
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001165                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001165                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001165  
Additional cDNA sequence: AF070674.1 BC027485.2 BC037420.1 L43346.1 L49432.1 U45878.1
6 DOTS entries : DT.442857 DT.100813069 DT.92421251 DT.95177781 DT.92425948 DT.100690941
24/228 AceView cDNA sequences (see all 228
):BU685791 AW591294 AI767171 AA252610 AA962737 AI678800 AV716229 AI581499 BU663067 AA761368 BU663663 AI823946 AI354462 AA261801 BU665522 AI880555 AW590487 BF339660 AI797582 AI950016 AI950126 AA534507 BM476485 AI635855
highest scoring ESTs for BIRC3 :U45878 AA243387 AA252610 AA314209 AA534507 AA582034 AA582044 AA808391 AA828467 AF070674
Unigene Cluster for BIRC3: Baculoviral IAP repeat-containing 3 Hs.127799 [show with all ESTs ] Unigene Representative Sequence: NM_001165 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for BIRC3 ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13a · 13b SP1 :           -   -   -         -                   SP2 :                       -                   SP3 :                                         SP4 :                                         SP5 :       -                                  
About this scheme ECgene alternative splicing isoforms for BIRC3 2 Ensembl transcripts including schematic representations : ENST00000393201
ENST00000263464
Expression for BIRC3
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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BIRC3 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for BIRC3 1 / 2 / 3
5 probe-sets matching BIRC3 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GTGTTTTTATSOURCE GeneReport for Unigene cluster: Hs.127799 Expression variation in blood from EXPOLDB for BIRC3
UniProtKB/Swiss-Prot: BIRC3_HUMAN, Q13489 Tissue specificity : Highly expressed in fetal lung, and kidney. In the adult, expression is mainlyseen in lymphoid tissues, including spleen, thymus and peripheral blood lymphocytes
Orthologs for BIRC3
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for BIRC3 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for BIRC3 ENSEMBL Gene Tree for BIRC3 Paralogs for BIRC3 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for BIRC3 gene BIRC7 2 ENSG00000163098 2 XIAP 2 BIRC2 2 BIRC8 2
SNPs/Variants for BIRC3 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for BIRC3 (up to first 250kb)
Disorders & Mutations for BIRC3
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 601721 UniProtKB/Swiss-Prot: BIRC3_HUMAN, Q13489
A chromosomal aberration involving BIRC3 is recurrent in low-grade mucosa-associatedlymphoid tissue (MALT lymphoma). Translocation t(11;18)(q21;q21) with MALT1. This translocation isfound in approximately 50% of cytogenetically abnormal low-grade MALT lymphoma
10/36 Novoseek disease relationships for BIRC3 gene (see all 36
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
malt lymphoma
76.61
17
10797525 (1), 11162514 (1), 19234489 (1), 11159207 (1) (see all 15 )
necrosis
61.07
20
10657935 (2), 11106668 (1), 17011514 (1), 16291753 (1) (see all 15 )
tumors
53.49
39
16983704 (3), 11484955 (3), 10657935 (2), 10815900 (2) (see all 24 )
lymphoma b-cell
53.38
8
11066071 (1), 16983704 (1), 14652825 (1)
leukemia
41.18
6
16638183 (2), 16983704 (1)
lymphoma
41.14
4
16983704 (2), 10751367 (1)
burkitt lymphoma
39.47
3
16983704 (1), 18503581 (1)
cancer
36.66
17
18570872 (3), 15856013 (2), 15265700 (1), 18992220 (1) (see all 12 )
muscular atrophy spinal
30.84
1
11397650 (1)
colon cancer
29.53
8
14527959 (4), 15078890 (3)
About this table Human Genome Epidemiology Navigator: BIRC3 (2 documents)
Medical News for BIRC3 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for BIRC3 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/326 PubMed articles for BIRC3 gene (see all 326
): Suppression of apoptosis in mammalian cells by NAIP and a related family of IAP genes. (PubMed id 8552191) 2, 3, 4 Liston P.... Korneluk R.G. (1996) The TNFR2-TRAF signaling complex contains two novel proteins related to baculoviral inhibitor of apoptosis proteins. (PubMed id 8548810) 2, 3, 4 Rothe M....Goeddel D.V. (1995) Structure of the MLT gene and molecular characterization of the genomic breakpoint junctions in the t(11;18)(q21;q21) of marginal zone B-cell lymphomas of MALT type. (PubMed id 11066071) 1, 3, 4 Baens M.... Marynen P. (2000) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Vascular endothelial genes that are responsive to tumor necrosis factor-alpha in vitro are expressed in atherosclerotic lesions, including inhibitor of apoptosis protein-1, stannin, and two novel genes. (PubMed id 10233894) 3, 4 Horrevoets A.J.G.... Pannekoek H. (1999) Cloning and expression of apoptosis inhibitory protein homologs that function to inhibit apoptosis and/or bind tumor necrosis factor receptor-associated factors. (PubMed id 8643514) 3, 4 Uren A.G.... Vaux D.L. (1996) Expression of the inhibitor of apoptosis (IAP) family members in human neutrophils: up-regulation of cIAP2 by granulocyte colony-stimulating factor and overexpression of cIAP2 in chronic neutrophilic leukemia. (PubMed id 12393423) 1, 3 Hasegawa T....Kitagawa S. (2003) Induction of cIAP-2 in human colon cancer cells through PKC delta/NF-kappa B. (PubMed id 14527959) 1, 3 Wang Q....Evers B.M. (2003) Human papillomavirus type 16 E6 and E7 oncoproteins upregulate c-IAP2 gene expression and confer resistance to apoptosis. (PubMed id 15856013) 1, 3 Yuan H....Liu X. (2005) Cell cycle-dependent expression of cIAP2 at G2/M phase contributes to survival during mitotic cell cycle arrest. (PubMed id 16813569) 1, 3 Jin H.S. and Lee T.H. (2006)
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Genome Databases showing BIRC3
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing BIRC3
(According to HUGE )
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Specialized Databases showing BIRC3 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for BIRC3 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for BIRC3:
Antibodies & Assays for BIRC3   (c-IAP2)
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009