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Aliases for APH1B Gene

Aliases for APH1B Gene

  • Aph-1 Homolog B, Gamma-Secretase Subunit 2 3 5
  • APH1B Gamma Secretase Subunit 2 3
  • Aph-1beta 3 4
  • APH-1B 3 4
  • PSFL 3 4
  • Anterior Pharynx Defective 1 Homolog B (C. Elegans) 2
  • Anterior Pharynx Defective 1 Homolog B 3
  • Presenilin-Stabilization Factor-Like 4
  • Gamma-Secretase Subunit APH-1B 3
  • PRO1328 3
  • TAAV688 3

External Ids for APH1B Gene

Previous GeneCards Identifiers for APH1B Gene

  • GC15P061357
  • GC15P063569
  • GC15P040392
  • GC15P063647
  • GC15P064360
  • GC15P064873
  • GC15P065755
  • GC15P063467
  • GC15P063778
  • GC15P064282
  • GC15P066328

Summaries for APH1B Gene

Entrez Gene Summary for APH1B Gene

  • This gene encodes a multi-pass transmembrane protein that is a functional component of the gamma-secretase complex, which also contains presenilin and nicastrin. This protein represents a stabilizing cofactor for the presenilin holoprotein in the complex. The gamma-secretase complex catalyzes the cleavage of integral proteins such as notch receptors and beta-amyloid precursor protein. [provided by RefSeq, Sep 2011]

GeneCards Summary for APH1B Gene

APH1B (Aph-1 Homolog B, Gamma-Secretase Subunit) is a Protein Coding gene. Diseases associated with APH1B include Alzheimer Disease. Among its related pathways are p75 NTR receptor-mediated signalling and HIV Life Cycle. GO annotations related to this gene include peptidase activity. An important paralog of this gene is APH1A.

UniProtKB/Swiss-Prot for APH1B Gene

  • Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex. Probably present in a minority of gamma-secretase complexes compared to APH1A.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for APH1B Gene

Genomics for APH1B Gene

Regulatory Elements for APH1B Gene

Enhancers for APH1B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F063249 1.2 Ensembl ENCODE 23.2 -25.2 -25174 3.4 SIN3A ZBTB40 ZNF316 NFE2 FOS DNMT1 MAFK NFE2L2 SMARCE1 HLF APH1B CA12 RPS27L RAB8B LACTB
GH15F063217 0.9 Ensembl ENCODE 22.1 -57.2 -57218 2.8 HDGF YBX3 PKNOX1 ARNT FEZF1 YBX1 CHAMP1 ZNF366 ETV6 FOS APH1B RAB8B RPS27L
GH15F063176 0.2 ENCODE 21.8 -98.7 -98659 0.9 ATF1 TBL1XR1 SIN3A BMI1 ZBTB40 ZNF366 ETV6 FOS CREM JUNB APH1B CA12 FBXL22 LOC101928972 RPS27L
GH15F063226 1.5 FANTOM5 Ensembl ENCODE 17.1 -42.7 -42747 14.3 PKNOX1 ARNT CREB3L1 FEZF1 YY1 FOS KLF13 ZNF263 JUNB TBX21 RPS27L RAB8B APH1B ENSG00000259498 USP3-AS1 LACTB CA12 FBXL22 USP3
GH15F063276 0.2 ENCODE 15.7 +1.7 1690 2.3 SIN3A ZNF2 YY1 GLIS2 ZNF143 ZNF207 KLF7 ZNF592 ZNF610 SMARCA4 APH1B LACTB RAB8B RPS27L FBXL22 USP3 ENSG00000259498 LOC105370858
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around APH1B on UCSC Golden Path with GeneCards custom track

Promoters for APH1B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000409416 1682 2201 SIN3A ZNF2 GLIS2 KLF7 ZNF592 ZNF610 SMARCA4 GLIS1 NBN SP7

Genomic Location for APH1B Gene

Chromosome:
15
Start:
63,276,018 bp from pter
End:
63,309,126 bp from pter
Size:
33,109 bases
Orientation:
Plus strand

Genomic View for APH1B Gene

Genes around APH1B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
APH1B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APH1B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APH1B Gene

Proteins for APH1B Gene

  • Protein details for APH1B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WW43-APH1B_HUMAN
    Recommended name:
    Gamma-secretase subunit APH-1B
    Protein Accession:
    Q8WW43
    Secondary Accessions:
    • A8K589
    • Q564N3
    • Q6UWQ1
    • Q9H0S0

    Protein attributes for APH1B Gene

    Size:
    257 amino acids
    Molecular mass:
    28460 Da
    Quaternary structure:
    • Probable component of the gamma-secretase complex, a complex composed of a presenilin homodimer (PSEN1 or PSEN2), nicastrin (NCSTN), APH1 (APH1A or APH1B) and PEN2. Such minimal complex is sufficient for secretase activity, although other components may exist (By similarity). Interacts with PSEN1 and PSEN2.

    Alternative splice isoforms for APH1B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for APH1B Gene

Post-translational modifications for APH1B Gene

  • Ubiquitination at Lys 247
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for APH1B Gene

Domains & Families for APH1B Gene

Protein Domains for APH1B Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for APH1B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8WW43

UniProtKB/Swiss-Prot:

APH1B_HUMAN :
  • Belongs to the APH-1 family.
Family:
  • Belongs to the APH-1 family.
genes like me logo Genes that share domains with APH1B: view

No data available for Gene Families for APH1B Gene

Function for APH1B Gene

Molecular function for APH1B Gene

UniProtKB/Swiss-Prot Function:
Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex. Probably present in a minority of gamma-secretase complexes compared to APH1A.

Gene Ontology (GO) - Molecular Function for APH1B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004175 endopeptidase activity IBA --
GO:0005515 protein binding IPI 12297508
GO:0008233 peptidase activity IDA 12297508
genes like me logo Genes that share ontologies with APH1B: view

Phenotypes for APH1B Gene

genes like me logo Genes that share phenotypes with APH1B: view

Animal Models for APH1B Gene

MGI Knock Outs for APH1B:

Animal Model Products

miRNA for APH1B Gene

miRTarBase miRNAs that target APH1B

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for APH1B

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for APH1B Gene

Localization for APH1B Gene

Subcellular locations from UniProtKB/Swiss-Prot for APH1B Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for APH1B Gene COMPARTMENTS Subcellular localization image for APH1B gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for APH1B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005783 endoplasmic reticulum IBA --
GO:0005886 plasma membrane TAS --
GO:0005887 integral component of plasma membrane IBA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA,IDA 12297508
genes like me logo Genes that share ontologies with APH1B: view

Pathways & Interactions for APH1B Gene

genes like me logo Genes that share pathways with APH1B: view

SIGNOR curated interactions for APH1B Gene

Activates:

Gene Ontology (GO) - Biological Process for APH1B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007219 Notch signaling pathway TAS --
GO:0007220 Notch receptor processing TAS --
GO:0016485 protein processing IEA,IDA 12297508
GO:0031293 membrane protein intracellular domain proteolysis TAS --
GO:0043065 positive regulation of apoptotic process TAS --
genes like me logo Genes that share ontologies with APH1B: view

Drugs & Compounds for APH1B Gene

(16) Drugs for APH1B Gene - From: ApexBio and DGIdb

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
BMS-708163 (Avagacestat) Pharma γ-secretase inhibitor 0
DAPT (GSI-IX) Pharma γ-secretase inhibitor,potent and specific 0
LY2811376 Pharma Non-peptidic BACE1 inhibitor 0
LY-411575 Pharma Gamma secretase inhibitor 0
LY-411575 isomer 1 Pharma 0

(11) ApexBio Compounds for APH1B Gene

Compound Action Cas Number
BMS-708163 (Avagacestat) γ-secretase inhibitor 1146699-66-2
DAPT (GSI-IX) γ-secretase inhibitor,potent and specific 208255-80-5
LY2811376 Non-peptidic BACE1 inhibitor 1194044-20-6
LY-411575 Gamma secretase inhibitor 209984-57-6
LY-411575 isomer 1 209984-58-7
LY-411575 isomer 2
LY-411575 isomer 3
MK-0752 γ-secretase inhibitor 471905-41-6
RO4929097 γ secretase inhibitor 847925-91-1
Semagacestat (LY450139) γ-secretase inhibitor 425386-60-3
YO-01027 (Dibenzazepine, DBZ) γ-secretase inhibitor 209984-56-5
genes like me logo Genes that share compounds with APH1B: view

Transcripts for APH1B Gene

Unigene Clusters for APH1B Gene

Anterior pharynx defective 1 homolog B (C. elegans):
Representative Sequences:

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for APH1B

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for APH1B Gene

ExUns: 1 ^ 2a · 2b · 2c · 2d · 2e ^ 3 ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7 ^ 8a · 8b ^ 9a · 9b · 9c · 9d
SP1: - - - -
SP2: - - - - - - - - -
SP3: - - - - -
SP4: - - - - - - -
SP5: - - - - - -
SP6: - -
SP7: -
SP8: -

Relevant External Links for APH1B Gene

GeneLoc Exon Structure for
APH1B
ECgene alternative splicing isoforms for
APH1B

Expression for APH1B Gene

mRNA expression in normal human tissues for APH1B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for APH1B Gene

This gene is overexpressed in Testis (x5.1).

Protein differential expression in normal tissues from HIPED for APH1B Gene

This gene is overexpressed in Testis (43.2), Peripheral blood mononuclear cells (13.5), and Spinal cord (11.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for APH1B Gene



Protein tissue co-expression partners for APH1B Gene

NURSA nuclear receptor signaling pathways regulating expression of APH1B Gene:

APH1B

SOURCE GeneReport for Unigene cluster for APH1B Gene:

Hs.511703

mRNA Expression by UniProt/SwissProt for APH1B Gene:

Q8WW43-APH1B_HUMAN
Tissue specificity: Weakly or not expressed in leukocytes, lung, placenta, small intestine, liver, kidney, spleen thymus, colon, skeletal muscle, heart and brain.
genes like me logo Genes that share expression patterns with APH1B: view

Primer Products

Orthologs for APH1B Gene

This gene was present in the common ancestor of animals.

Orthologs for APH1B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia APH1B 34 35
  • 99.22 (n)
mouse
(Mus musculus)
Mammalia Aph1b 34 16 35
  • 86.64 (n)
Aph1c 35
  • 81 (a)
OneToMany
dog
(Canis familiaris)
Mammalia APH1B 34 35
  • 86.22 (n)
cow
(Bos Taurus)
Mammalia APH1B 35
  • 81 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia APH1B 35
  • 59 (a)
OneToOne
chicken
(Gallus gallus)
Aves -- 35
  • 55 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 62 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii aph1b 35
  • 63 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta aph-1 35
  • 46 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea aph-1 35
  • 24 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.7022 35
  • 46 (a)
OneToMany
Species where no ortholog for APH1B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for APH1B Gene

ENSEMBL:
Gene Tree for APH1B (if available)
TreeFam:
Gene Tree for APH1B (if available)

Paralogs for APH1B Gene

Paralogs for APH1B Gene

(2) SIMAP similar genes for APH1B Gene using alignment to 4 proteins:

Pseudogenes.org Pseudogenes for APH1B Gene

genes like me logo Genes that share paralogs with APH1B: view

Variants for APH1B Gene

Sequence variations from dbSNP and Humsavar for APH1B Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs10152148 -- 63,299,703(+) CCAGC(C/G)CCTGA intron-variant
rs1047552 -- 63,305,658(+) GCATT(G/T)ATAAT reference, missense
rs10519204 -- 63,308,677(+) TTCAG(C/T)GTGGG utr-variant-3-prime
rs11071738 -- 63,287,956(+) TGGGA(C/T)AATAG intron-variant
rs11071739 -- 63,293,697(+) ttcgc(C/T)atgtt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for APH1B Gene

Variant ID Type Subtype PubMed ID
nsv1035441 CNV gain 25217958
nsv428305 CNV gain 18775914

Variation tolerance for APH1B Gene

Residual Variation Intolerance Score: 77.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.09; 69.03% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for APH1B Gene

Human Gene Mutation Database (HGMD)
APH1B
SNPedia medical, phenotypic, and genealogical associations of SNPs for
APH1B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for APH1B Gene

Disorders for APH1B Gene

MalaCards: The human disease database

(1) MalaCards diseases for APH1B Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
alzheimer disease
  • alzheimer disease, late-onset
- elite association - COSMIC cancer census association via MalaCards
Search APH1B in MalaCards View complete list of genes associated with diseases

Relevant External Links for APH1B

Genetic Association Database (GAD)
APH1B
Human Genome Epidemiology (HuGE) Navigator
APH1B
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
APH1B
genes like me logo Genes that share disorders with APH1B: view

No data available for UniProtKB/Swiss-Prot and Genatlas for APH1B Gene

Publications for APH1B Gene

  1. Interaction between the APOE epsilon4 allele and the APH-1b c + 651T > G SNP in Alzheimer's disease. (PMID: 17466415) Poli M. … Finazzi D. (Neurobiol. Aging 2008) 3 22 46 64
  2. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 2 3 4 64
  3. Correlation between HIV-1 seropositivity and prevalence of a gamma-secretase polymorphism in two distinct ethnic populations. (PMID: 19774691) van Loo K.M. … Martens G.J. (J. Med. Virol. 2009) 3 46 64
  4. Male-specific association between a gamma-secretase polymorphism and premature coronary atherosclerosis. (PMID: 18987747) van Loo K.M. … Martens G.J. (PLoS ONE 2008) 3 46 64
  5. Characterization of APH-1 mutants with a disrupted transmembrane GxxxG motif. (PMID: 16757808) Araki W. … Murayama K.S. (J. Mol. Neurosci. 2006) 3 22 64

Products for APH1B Gene

Sources for APH1B Gene

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