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Aliases for APCDD1L-AS1 Gene

Subcategory (RNA class) for APCDD1L-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for APCDD1L-AS1 Gene

  • APCDD1L Antisense RNA 1 (Head To Head) 2 3 5
  • APCDD1L Antisense RNA 1 (Non-Protein Coding) 2
  • APCDD1L Antisense RNA 1 2

External Ids for APCDD1L-AS1 Gene

Previous GeneCards Identifiers for APCDD1L-AS1 Gene

  • GC20P057092

Summaries for APCDD1L-AS1 Gene

GeneCards Summary for APCDD1L-AS1 Gene

APCDD1L-AS1 (APCDD1L Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for APCDD1L-AS1 Gene

Genomics for APCDD1L-AS1 Gene

Regulatory Elements for APCDD1L-AS1 Gene

Enhancers for APCDD1L-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F058541 0.9 Ensembl ENCODE 12 +26.7 26651 1.2 SMARCE1 KLF1 PKNOX1 JUN CEBPB USF2 ZBTB7A RAD51 JUND ATF3 APCDD1L APCDD1L-AS1 GC20M058516 ENSG00000254620
GH20F058547 0.7 ENCODE 12 +32.7 32669 1.3 RCOR1 ZMIZ1 ETV6 PRDM10 MAFK CHD2 MAZ ZBTB8A EP300 JUND APCDD1L APCDD1L-AS1 GC20M058516 ENSG00000254620
GH20F058549 0.7 FANTOM5 ENCODE 11.9 +35.1 35139 1.3 INSM2 FEZF1 RAD21 RFX5 GLIS2 HSF1 SCRT2 RCOR1 FOS ZNF843 APCDD1L APCDD1L-AS1 GC20M058516 ENSG00000254620
GH20F058479 0.9 Ensembl ENCODE 11.5 -34.6 -34619 2.7 GTF2F1 CTCF ESRRA SIN3A DMAP1 RAD21 GATA3 POLR2A SMC3 FOS APCDD1L APCDD1L-AS1 GNAS GNAS-AS1 ANKRD60 VAPB
GH20F058568 0.7 ENCODE 11.3 +55.2 55223 5.0 PKNOX1 MAX ZNF384 CEBPG ZIC2 RAD21 ZFHX2 FOXK2 SCRT2 ETV6 APCDD1L APCDD1L-AS1 ENSG00000254620 GC20M058516
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around APCDD1L-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for APCDD1L-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001450106 -479 1401 ELF3 SIN3A RAD21 ZNF335 GLIS2 ELK1 HSF1 SCRT2 ZNF143 ZNF207

Genomic Location for APCDD1L-AS1 Gene

Chromosome:
20
Start:
58,515,379 bp from pter
End:
58,619,892 bp from pter
Size:
104,514 bases
Orientation:
Plus strand

Genomic View for APCDD1L-AS1 Gene

Genes around APCDD1L-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
APCDD1L-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APCDD1L-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APCDD1L-AS1 Gene

Proteins for APCDD1L-AS1 Gene

Post-translational modifications for APCDD1L-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for APCDD1L-AS1 Gene

Domains & Families for APCDD1L-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for APCDD1L-AS1 Gene

Function for APCDD1L-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APCDD1L-AS1 Gene

Localization for APCDD1L-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for APCDD1L-AS1 Gene

Pathways & Interactions for APCDD1L-AS1 Gene

SuperPathways for APCDD1L-AS1 Gene

No Data Available

Interacting Proteins for APCDD1L-AS1 Gene

Gene Ontology (GO) - Biological Process for APCDD1L-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for APCDD1L-AS1 Gene

Transcripts for APCDD1L-AS1 Gene

mRNA/cDNA for APCDD1L-AS1 Gene

(4) Additional mRNA sequences :
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for APCDD1L-AS1 Gene

APCDD1L antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for APCDD1L-AS1 Gene

No ASD Table

Relevant External Links for APCDD1L-AS1 Gene

GeneLoc Exon Structure for
APCDD1L-AS1
ECgene alternative splicing isoforms for
APCDD1L-AS1

Expression for APCDD1L-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for APCDD1L-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for APCDD1L-AS1 Gene

This gene is overexpressed in Minor Salivary Gland (x10.0), Breast - Mammary Tissue (x5.4), and Kidney - Cortex (x4.8).

SOURCE GeneReport for Unigene cluster for APCDD1L-AS1 Gene:

Hs.685214
genes like me logo Genes that share expression patterns with APCDD1L-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for APCDD1L-AS1 Gene

Orthologs for APCDD1L-AS1 Gene

Evolution for APCDD1L-AS1 Gene

ENSEMBL:
Gene Tree for APCDD1L-AS1 (if available)
TreeFam:
Gene Tree for APCDD1L-AS1 (if available)

No data available for Orthologs for APCDD1L-AS1 Gene

Paralogs for APCDD1L-AS1 Gene

No data available for Paralogs for APCDD1L-AS1 Gene

Variants for APCDD1L-AS1 Gene

Sequence variations from dbSNP and Humsavar for APCDD1L-AS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs10154009 -- 58,540,994(+) CGCAT(C/G)AGGGG intron-variant
rs10154019 -- 58,541,134(+) GTGCT(A/G)TCAGG intron-variant
rs1022672 -- 58,534,997(-) tgtct(A/G)cagtc intron-variant
rs1040621 -- 58,557,938(+) TTTTC(A/G)GTATT intron-variant
rs10523376 -- 58,551,165(+) ATTTA(-/TTTG)TTTGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for APCDD1L-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv2273n106 CNV deletion 24896259
esv1004047 CNV deletion 20482838
esv2117299 CNV deletion 18987734
esv2470822 CNV insertion 19546169
esv26473 CNV loss 19812545
esv2668602 CNV deletion 23128226
esv2722622 CNV deletion 23290073
esv3358083 CNV insertion 20981092
esv3376382 CNV insertion 20981092
esv3414478 CNV insertion 20981092
esv3646224 CNV loss 21293372
nsv1063462 CNV gain 25217958
nsv1072549 CNV deletion 25765185
nsv1117290 CNV tandem duplication 24896259
nsv179317 CNV deletion 16902084
nsv180089 CNV insertion 16902084
nsv3429 CNV insertion 18451855
nsv513551 CNV insertion 21212237
nsv586351 CNV loss 21841781
nsv834019 CNV loss 17160897

Relevant External Links for APCDD1L-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
APCDD1L-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for APCDD1L-AS1 Gene

Disorders for APCDD1L-AS1 Gene

Relevant External Links for APCDD1L-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
APCDD1L-AS1

No disorders were found for APCDD1L-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for APCDD1L-AS1 Gene

Publications for APCDD1L-AS1 Gene

  1. Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines. (PMID: 24483146) Li L. … Wang L. (BMC Genomics 2014) 3 64
  2. Longitudinal genome-wide association of cardiovascular disease risk factors in the Bogalusa heart study. (PMID: 20838585) Smith E.N. … Murray S.S. (PLoS Genet. 2010) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for APCDD1L-AS1 Gene

Sources for APCDD1L-AS1 Gene

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