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Aliases for APCDD1 Gene

Aliases for APCDD1 Gene

  • Adenomatosis Polyposis Coli Down-Regulated 1 2 3
  • Adenomatosis Polyposis Coli Down-Regulated 1 Protein 3 4
  • DRAPC1 3 4
  • HHS 3 6
  • HTS 3 6
  • Hypoptrichosis Simplex 3
  • Protein APCDD1 3
  • FP7019 3
  • B7323 3
  • HYPT1 3

External Ids for APCDD1 Gene

Summaries for APCDD1 Gene

Entrez Gene Summary for APCDD1 Gene

  • This locus encodes an inhibitor of the Wnt signaling pathway. Mutations at this locus have been associated with hereditary hypotrichosis simplex. Increased expression of this gene may also be associated with colorectal carcinogenesis.[provided by RefSeq, Sep 2010]

GeneCards Summary for APCDD1 Gene

APCDD1 (Adenomatosis Polyposis Coli Down-Regulated 1) is a Protein Coding gene. Diseases associated with APCDD1 include hypotrichosis 1 and hypotrichosis simplex. GO annotations related to this gene include Wnt-protein binding. An important paralog of this gene is APCDD1L.

UniProtKB/Swiss-Prot for APCDD1 Gene

  • Negative regulator of the Wnt signaling pathway. Inhibits Wnt signaling in a cell-autonomous manner and functions upstream of beta-catenin. May act via its interaction with Wnt and LRP proteins. May play a role in colorectal tumorigenesis.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for APCDD1 Gene

Genomics for APCDD1 Gene

Genomic Location for APCDD1 Gene

Start:
10,454,628 bp from pter
End:
10,489,948 bp from pter
Size:
35,321 bases
Orientation:
Plus strand

Genomic View for APCDD1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for APCDD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APCDD1 Gene

Regulatory Elements for APCDD1 Gene

Proteins for APCDD1 Gene

  • Protein details for APCDD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8J025-APCD1_HUMAN
    Recommended name:
    Protein APCDD1
    Protein Accession:
    Q8J025
    Secondary Accessions:
    • B4DUQ0
    • B4DZT0
    • Q71M25

    Protein attributes for APCDD1 Gene

    Size:
    514 amino acids
    Molecular mass:
    58797 Da
    Quaternary structure:
    • Homodimer. Interacts with LRP5 and WNT3A.
    SequenceCaution:
    • Sequence=AAQ04816.1; Type=Frameshift; Positions=133; Evidence={ECO:0000305}; Sequence=BAG62412.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAG64192.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

neXtProt entry for APCDD1 Gene

Proteomics data for APCDD1 Gene at MOPED

Post-translational modifications for APCDD1 Gene

Other Protein References for APCDD1 Gene

No data available for DME Specific Peptides for APCDD1 Gene

Domains for APCDD1 Gene

Protein Domains for APCDD1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for APCDD1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8J025

UniProtKB/Swiss-Prot:

APCD1_HUMAN
Family:
  • Belongs to the APCDD1 family.:
    • Q8J025
genes like me logo Genes that share domains with APCDD1: view

No data available for Gene Families for APCDD1 Gene

Function for APCDD1 Gene

Molecular function for APCDD1 Gene

UniProtKB/Swiss-Prot Function: Negative regulator of the Wnt signaling pathway. Inhibits Wnt signaling in a cell-autonomous manner and functions upstream of beta-catenin. May act via its interaction with Wnt and LRP proteins. May play a role in colorectal tumorigenesis.
UniProtKB/Swiss-Prot Induction: Target gene of the Wnt/Beta-catenin pathway, transcriptionally regulated by the CTNNB1/TF7L2 complex.

Gene Ontology (GO) - Molecular Function for APCDD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0017147 Wnt-protein binding IDA 20393562
genes like me logo Genes that share ontologies with APCDD1: view

Phenotypes for APCDD1 Gene

MGI mutant phenotypes for APCDD1:
inferred from 2 alleles
genes like me logo Genes that share phenotypes with APCDD1: view

Animal Models for APCDD1 Gene

MGI Knock Outs for APCDD1:

miRNA for APCDD1 Gene

miRTarBase miRNAs that target APCDD1

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for APCDD1 Gene

Localization for APCDD1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for APCDD1 Gene

Cell membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for APCDD1 Gene COMPARTMENTS Subcellular localization image for APCDD1 gene
Compartment Confidence
plasma membrane 5
golgi apparatus 2
cytosol 1
extracellular 1
lysosome 1
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for APCDD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005887 integral component of plasma membrane IDA 20393562
genes like me logo Genes that share ontologies with APCDD1: view

Pathways for APCDD1 Gene

SuperPathways for APCDD1 Gene

No Data Available

Interacting Proteins for APCDD1 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000347433%0d%0a9606.ENSP00000284523%0d%0a9606.ENSP00000294304%0d%0a
Selected Interacting proteins: ENSP00000347433 Q8J025-APCD1_HUMAN for APCDD1 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for APCDD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001942 hair follicle development IMP 20393562
GO:0016055 Wnt signaling pathway IEA --
GO:0030178 negative regulation of Wnt signaling pathway IDA 20393562
GO:0043615 astrocyte cell migration IEA --
genes like me logo Genes that share ontologies with APCDD1: view

No data available for Pathways by source for APCDD1 Gene

Transcripts for APCDD1 Gene

Unigene Clusters for APCDD1 Gene

Adenomatosis polyposis coli down-regulated 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for APCDD1 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b · 9c
SP1: - - -
SP2: - -
SP3: - - - - - -
SP4: - - - - - - -
SP5: - - - -
SP6:
SP7: - -

Relevant External Links for APCDD1 Gene

GeneLoc Exon Structure for
APCDD1
ECgene alternative splicing isoforms for
APCDD1

Expression for APCDD1 Gene

mRNA expression in normal human tissues for APCDD1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for APCDD1 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (4.0).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for APCDD1 Gene

SOURCE GeneReport for Unigene cluster for APCDD1 Gene Hs.293274

mRNA Expression by UniProt/SwissProt for APCDD1 Gene

Q8J025-APCD1_HUMAN
Tissue specificity: Abundantly expressed in heart, pancreas, prostate and ovary. Moderately expressed in lung, liver, kidney, spleen, thymus, colon and peripheral lymphocytes. Abundantly expressed in both the epidermal and dermal compartments of the hair follicle. Present in scalp skin Highly expressed in the hair follicle dermal papilla, the matrix, and the hair shaft (at protein level).
genes like me logo Genes that share expressions with APCDD1: view

Orthologs for APCDD1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for APCDD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia APCDD1 35
  • 99.49 (n)
  • 99.78 (a)
APCDD1 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia APCDD1 35
  • 83.04 (n)
  • 85.31 (a)
APCDD1 36
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia APCDD1 35
  • 87.61 (n)
  • 89.88 (a)
APCDD1 36
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Apcdd1 35
  • 85.54 (n)
  • 91.83 (a)
Apcdd1 16
Apcdd1 36
  • 92 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia APCDD1 36
  • 89 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia APCDD1 36
  • 83 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Apcdd1 35
  • 85.6 (n)
  • 92.61 (a)
chicken
(Gallus gallus)
Aves APCDD1 35
  • 78.65 (n)
  • 84.96 (a)
APCDD1 36
  • 84 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia APCDD1 36
  • 82 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia apcdd1 35
  • 72.7 (n)
  • 79.96 (a)
zebrafish
(Danio rerio)
Actinopterygii APCDD1 36
  • 47 (a)
OneToOne
LOC100332639 35
  • 65.3 (n)
  • 62.5 (a)
Species with no ortholog for APCDD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for APCDD1 Gene

ENSEMBL:
Gene Tree for APCDD1 (if available)
TreeFam:
Gene Tree for APCDD1 (if available)

Paralogs for APCDD1 Gene

Paralogs for APCDD1 Gene

genes like me logo Genes that share paralogs with APCDD1: view

Variants for APCDD1 Gene

Sequence variations from dbSNP and Humsavar for APCDD1 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type MAF
rs2557 -- 10,488,618(-) CTTTT(A/C/T)TTGCA utr-variant-3-prime
rs91958 -- 10,485,366(+) GGTGA(C/T)CTGGT intron-variant
rs91959 -- 10,485,372(+) CTGGT(A/G)CCTGG intron-variant
rs471408 -- 10,468,323(+) ATACA(C/T)GAGAG intron-variant
rs476251 -- 10,481,529(+) ggggc(A/G)ggaga intron-variant

Structural Variations from Database of Genomic Variants (DGV) for APCDD1 Gene

Variant ID Type Subtype PubMed ID
esv33029 CNV Gain 17666407
esv2443287 CNV Deletion 19546169
esv2716786 CNV Deletion 23290073
esv1968192 CNV Deletion 18987734
esv3055 CNV Deletion 18987735
esv988512 CNV Deletion 20482838
nsv131991 CNV Loss 16902084
esv5818 CNV Loss 19470904
esv2716787 CNV Deletion 23290073
esv2716788 CNV Deletion 23290073
nsv458026 CNV Loss 19166990

Relevant External Links for APCDD1 Gene

HapMap Linkage Disequilibrium report
APCDD1
Human Gene Mutation Database (HGMD)
APCDD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for APCDD1 Gene

Disorders for APCDD1 Gene

(1) OMIM Diseases for APCDD1 Gene (607479)

UniProtKB/Swiss-Prot

APCD1_HUMAN
  • Hypotrichosis 1 (HYPT1) [MIM:605389]: A rare form of non-syndromic hereditary hypotrichosis without characteristic hair shaft anomalies. Affected individuals typically show normal hair at birth, but hair loss and thinning of the hair shaft start during early childhood and progress with age. {ECO:0000269 PubMed:20393562}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for APCDD1

Genetic Association Database (GAD)
APCDD1
Human Genome Epidemiology (HuGE) Navigator
APCDD1
genes like me logo Genes that share disorders with APCDD1: view

Publications for APCDD1 Gene

  1. Isolation of a novel human gene, APCDD1, as a direct target of the b- catenin/T-cell factor 4 complex with probable involvement in colorectal carcinogenesis. (PMID: 12384519) Takahashi M. … Nakamura Y. (Cancer Res. 2002) 2 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Large-scale cDNA transfection screening for genes related to cancer development and progression. (PMID: 15498874) Wan D. … Gu J. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4
  4. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48
  5. APCDD1 is a novel Wnt inhibitor mutated in hereditary hypotrichosis simplex. (PMID: 20393562) Shimomura Y. … Christiano A.M. (Nature 2010) 3 4

Products for APCDD1 Gene

Sources for APCDD1 Gene

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