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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

APC Gene

protein-coding   GIFtS: 73
GCID: GC05P112101

adenomatous polyposis coli

(Previous name: adenomatosis polyposis coli )
 Explore 178 diseases affiliated with
APC via our new
 Human Malady Compendium 
Biological research products
for APC
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Adenomatous Polyposis Coli1 2     GS2 5
DP2.51 2 3     Adenomatosis Polyposis Coli1
DP21 2     Adenomatosis Polyposis Coli Tumor Suppressor2
DP31 2     Adenomatous Polyposis Coli Protein2
PPP1R461 2     Protein Phosphatase 1, Regulatory Subunit 462
Deleted In Polyposis 2.52 3     Protein APC3
BTPS22 5     FPC5

External Ids:    HGNC: 5831   Entrez Gene: 3242   Ensembl: ENSG000001349827   OMIM: 6117315   UniProtKB: P250543   

Export aliases for APC gene to outside databases

Previous GC identifers: GC05P111687 GC05P112537 GC05P112074 GC05P112149 GC05P107222


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for APC:
This gene encodes a tumor suppressor protein that acts as an antagonist of the Wnt signaling pathway. It is also
involved in other processes including cell migration and adhesion, transcriptional activation, and apoptosis. Defects
in this gene cause familial adenomatous polyposis (FAP), an autosomal dominant pre-malignant disease that usually
progresses to malignancy. Disease-associated mutations tend to be clustered in a small region designated the mutation
cluster region (MCR) and result in a truncated protein product. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: APC_HUMAN, P25054
Function: Tumor suppressor. Promotes rapid degradation of CTNNB1 and participates in Wnt signaling as a negative
regulator. APC activity is correlated with its phosphorylation state. Activates the GEF activity of SPATA13 and
ARHGEF4. Plays a role in hepatocyte growth factor (HGF)-induced cell migration. Required for MMP9 up-regulation via
the JNK signaling pathway in colorectal tumor cells. Acts as a mediator of ERBB2-dependent stabilization of
microtubules at the cell cortex. It is required for the localization of MACF1 to the cell membrane and this
localization of MACF1 is critical for its function in microtubule stabilization

Gene Wiki entry for APC (Adenomatous polyposis coli)


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000005.9  NC_018916.1  NT_034772.6  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the APC gene promoter:
         TBP   STAT5B   Spz1   NF-1   NF-1/L   C/EBPbeta   MyoD   TFIID   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 4): APC promoter sequence
   Search SABiosciences Chromatin IP Primers for APC

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat APC


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q21-q22   Ensembl cytogenetic band:  5q22.2   HGNC cytogenetic band: 5q21-q22

APC Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
APC gene location

GeneLoc information about chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05P112101:  view genomic region     (about GC identifiers)

Start:
112,043,195 bp from pter      End:
112,181,936 bp from pter
Size:
138,742 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: APC_HUMAN, P25054 (See protein sequence)
Recommended Name: Adenomatous polyposis coli protein  
Size: 2843 amino acids; 311646 Da
Subunit: Forms homooligomers and heterooligomers with APC2. Interacts with DIAPH1 and DIAPH2 (By similarity). Interacts
with PDZ domains of DLG1 and DLG3. Associates with catenins. Binds axin. Interacts with ARHGEF4 (via N-terminus).
Interacts with MAPRE1 (via C-terminus); probably required for APC targeting to the growing microtubule plus ends.
Interacts with MAPRE2 and MAPRE3 (via C-terminus). Found in a complex consisting of ARHGEF4, APC and CTNNB1. Interacts
with SCRIB; may mediate APC targeting to adherens junctions of epithelial cells. Interacts with SPATA13 (via
N-terminus and SH3 domain). Interacts with ASAP1 (via SH3 domain). Found in a complex composed of MACF1, APC, AXIN1,
CTNNB1 and GSK3B (By similarity). Interacts at the cell membrane with AMER1 and AMER2 (via ARM repeats)
Subcellular location: Cell junction, adherens junction. Cytoplasm, cytoskeleton. Cell projection, lamellipodium. Cell
projection, ruffle membrane. Cytoplasm. Cell membrane. Note=Associated with the microtubule network at the growing
distal tip of microtubules. Accumulates in the lamellipodium and ruffle membrane in response to hepatocyte growth
factor (HGF) treatment. The MEMO1-RHOA-DIAPH1 signaling pathway controls localization of the phosophorylated form to
the cell membrane
Miscellaneous: APC mutations have led to some interesting observations. (1) the great majority of the mutations found
to date would result in truncation of the APC product. (2) almost all the mutations have occurred within the first
half of the coding sequence, and somatic mutations in colorectal tumors are further clustered in a particular region,
called MCR (mutation cluster region). (3) most identified point mutations in the APC gene are transitions from
cytosine to other nucleotides. (4) the location of germline mutations tends to correlate with the number of colorectal
polyps in FAP patients. Inactivation of both alleles of the APC gene seems to be required as an early event to develop
most adenomas and carcinomas in the colon and rectum as well as some of those in the stomach
6/17 PDB 3D structures from and Proteopedia for APC (see all 17):
1DEB (3D)        1EMU (3D)        1JPP (3D)        1M5I (3D)        1T08 (3D)        1TH1 (3D)    
Secondary accessions: D3DT03 Q15162 Q15163 Q93042
Alternative splicing: 2 isoforms:  P25054-1   P25054-2   

Explore the universe of human proteins at neXtProt for APC: NX_P25054

Post-translational modifications:

  • Phosphorylated by GSK3B1
  • Ubiquitinated, leading to its degradation by the proteasome. Ubiquitination is facilitated by Axin. Deubiquitinated by
  • ZRANB1/TRABID1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P25054

  • APC Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (3 alternative transcripts): 
    NP_000029.2  NP_001120982.1  NP_001120983.2  

    ENSEMBL proteins: 
     ENSP00000426541   ENSP00000423224   ENSP00000424265   ENSP00000257430   ENSP00000427089  
     ENSP00000423828   ENSP00000413133  
    Reactome Protein details: P25054
    Human Recombinant Protein Products: 
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    Novus Biologicals APC Protein
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    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for APC

    Gene Ontology (GO): 5/23 cellular component terms (GO ID links to tree view) (see all 23):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000776kinetochore IDA11283619
    GO:0005634nucleus IDA12072559
    GO:0005737cytoplasm IDA--
    GO:0005813centrosome IDA11283619
    GO:0005829cytosol TAS--


    APC for ontologies           About GeneDecksing



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    Uscn ELISAs and CLIAs for APC


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    APC for domains           About GeneDecksing

    5/11 InterPro domains/families (see all 11):
     IPR026818 Apc_fam
     IPR011989 ARM-like
     IPR009224 SAMP
     IPR000225 Armadillo
     IPR026836 APC

    Graphical View of Domain Structure for InterPro Entry P25054

    ProtoNet protein and cluster: P25054

    1 Blocks protein family: IPB000225 Armadillo repeat

    UniProtKB/Swiss-Prot: APC_HUMAN, P25054
    Domain: The microtubule tip localization signal (MtLS) motif; mediates interaction with MAPRE1 and targeting to the
    growing microtubule plus ends (By similarity)
    Similarity: Belongs to the adenomatous polyposis coli (APC) family
    Similarity: Contains 7 ARM repeats


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: APC_HUMAN, P25054
    Function: Tumor suppressor. Promotes rapid degradation of CTNNB1 and participates in Wnt signaling as a negative
    regulator. APC activity is correlated with its phosphorylation state. Activates the GEF activity of SPATA13 and
    ARHGEF4. Plays a role in hepatocyte growth factor (HGF)-induced cell migration. Required for MMP9 up-regulation via
    the JNK signaling pathway in colorectal tumor cells. Acts as a mediator of ERBB2-dependent stabilization of
    microtubules at the cell cortex. It is required for the localization of MACF1 to the cell membrane and this
    localization of MACF1 is critical for its function in microtubule stabilization

         Genatlas biochemistry entry for APC:
    multidomain protein,binding beta-catenin and regulating free beta-catenin level,involved in cell adhesion and active
    cell migration,mutated in adenomatous polyposis coli,colon and rectum carcinoma non polyposis,modulating the frequency
    and classes of mutation leading to colon polyps

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    8/112 QIAGEN miScript miRNA Assays for microRNAs that regulate APC (see all 112):
    hsa-miR-579 hsa-miR-520e hsa-miR-300 hsa-miR-374a hsa-miR-519a hsa-miR-3916 hsa-miR-502-3p hsa-miR-3161
    SwitchGear 3'UTR luciferase reporter plasmidAPC 3' UTR sequence
    Inhib. RNA
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    Gene Ontology (GO): 5/8 molecular function terms (GO ID links to tree view) (see all 8):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI--
    GO:0008013beta-catenin binding IPI7890674
    GO:0008017microtubule binding IDA16188939
    GO:0019887protein kinase regulator activity IDA11972058
    GO:0019901protein kinase binding IPI8638126


    APC for ontologies           About GeneDecksing


    3 GenomeRNAi human phenotypes for APC:
     Decreased POU5F1-GFP protein e  Decreased focal adhesion (FA)   Upregulation of Wnt/beta-caten 

    Animal Models:
         Mouse knock-outs for APC: Apctm1.1Tyj Apctm4Mmt Apctm1Cip Apctm1Rak Apctm1.1Tno Apctm1Mmt
                                                   Apctm1Hsa Apctm1.1Ecrm Apctm2.1Rak
         15/27 MGI mutant phenotypes (inferred from 25 alleles(MGI details for Apc) (see all 27):
     adipose tissue  behavior/neurological  cardiovascular system  cellular  craniofacial 
     digestive/alimentary  embryogenesis  endocrine/exocrine gland  growth/size  hearing/vestibular/ear 
     hematopoietic system  homeostasis/metabolism  immune system  integument  limbs/digits/tail 

    APC for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/29 super-pathways (see all 29About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Wnt Signaling Pathway
    Wnt Signaling Pathway1.00
    Wnt Signaling Pathway0.33
    Wnt Signaling Pathway and Pluripotency0.55
    Wnt signaling pathway0.30
    DNA damage response (only ATM dependent)0.35
    Wnt Signaling Pathway NetPath0.22
    2Ubiquitinated Orc1 is degraded by the proteasome
    Degradation of beta-catenin by the destruction complex0.72
    Degradation of ubiquitinated -beta catenin by the proteasome0.72
    Signaling by Wnt0.72
    Apoptosis0.31
    3Apoptotic cleavage of cellular proteins
    Apoptotic cleavage of cellular proteins1.00
    Apoptotic execution phase0.73
    4Integrated Pancreatic Cancer Pathway
    Integrated Pancreatic Cancer Pathway1.00
    Integrated Pancreatic Cancer Pathway0.99
    5Nanog in Mammalian ESC Pluripotency
    Nanog in Mammalian ESC Pluripotency1.00
    GSK3 Signaling0.61

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    1 EMD Millipore Pathway for APC
        Selected targets of p53

    1 R&D Systems Pathway for APC
        Wnt Signaling Pathway

    5/11 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for APC (see all 11)
        Factors Promoting Cardiogenesis in Vertebrates
    Molecular Mechanisms of Cancer
    G12-G13 in Cellular Signaling
    Colorectal Cancer Metastasis
    Glioblastoma Multiforme

    1 Cell Signaling Technology (CST) Pathway for APC
        Wnt / Hedgehog / Notch

    5/15 BioSystems Pathways for APC (see all 15
        Wnt Signaling Pathway and Pluripotency
    Wnt Signaling Pathway
    Irinotecan Pathway
    DNA damage response (only ATM dependent)
    Integrated Pancreatic Cancer Pathway

    5/8        Reactome Pathways for APC (see all 8)
        Apoptotic execution phase
    Signaling by Wnt
    Degradation of beta-catenin by the destruction complex
    Apoptosis
    Degradation of ubiquitinated -beta catenin by the proteasome


    5/6         Kegg Pathways  (Kegg details for APC) (see all 6):
        Wnt signaling pathway
    Regulation of actin cytoskeleton
    Pathways in cancer
    Colorectal cancer
    Endometrial cancer


    APC for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for APC

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/469 Interacting proteins for APC (P250541, 2, 3 ENSP000002574304) via UniProtKB, MINT, STRING, and/or I2D (see all 469)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    CTNNB1P352221, 2, 3, ENSP000003444564EBI-727707,EBI-491549 MINT-4508229 I2D: score=8 STRING: ENSP00000344456
    DVL1O146402, 3, ENSP000003681694MINT-7897032 MINT-7897055 MINT-7897075 MINT-7897100 I2D: score=1 STRING: ENSP00000368169
    DVL2O146412, 3, ENSP000000053404MINT-7890898 MINT-7897032 MINT-7897075 I2D: score=2 STRING: ENSP00000005340
    PXNP490232, 3, ENSP000002283074MINT-7891130 MINT-7897100 I2D: score=2 STRING: ENSP00000228307
    MAPRE1Q156911, 3, ENSP000003647214EBI-727707,EBI-1004115 I2D: score=5 STRING: ENSP00000364721
    About this table

    Gene Ontology (GO): 5/63 biological process terms (GO ID links to tree view) (see all 63):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000281cytokinesis after mitosis IMP17570218
    GO:0001822kidney development IEA--
    GO:0001942hair follicle development IEA--
    GO:0006461protein complex assembly IDA16188939
    GO:0006915apoptotic process TAS--


    APC for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    APC for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for APC
    10/88 Novoseek chemical compound relationships for APC gene (see all 88)    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    af/ap 80.5 4 10494086 (2), 11786778 (1), 15623495 (1)
    crcs 74.3 10 11270422 (1), 17704924 (1), 11751382 (1), 14578138 (1) (see all 8)
    sulindac 60.9 8 11535846 (3), 12663524 (2), 19755659 (1), 8707116 (1)
    phip 60.7 17 19628463 (2), 9202752 (2), 11181456 (2), 9202738 (1) (see all 11)
    glycogen 59.9 144 19339242 (9), 9003374 (5), 10233043 (5), 12829248 (5) (see all 55)
    pphp 48.9 2 1621772 (1)
    1-hydroxyanthraquinone 48 3 9433483 (2), 10204808 (1)
    samp 47.7 3 10346819 (1), 10021369 (1), 10966653 (1)
    5-aza-2'deoxycytidine 46.1 5 17065059 (1), 15087381 (1), 15225415 (1), 18058533 (1) (see all 5)
    adenylate 38.1 15 2167212 (1), 10421220 (1), 1637317 (1), 8131796 (1) (see all 15)

    Search CenterWatch for drugs/clinical trials and news about APC 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for APC gene (3 alternative transcripts): 
    NM_000038.5  NM_001127510.2  NM_001127511.2  

    Unigene Cluster for APC:

    Adenomatous polyposis coli
    Hs.158932  [show with all ESTs]
    Unigene Representative Sequence: NM_001127510
    13 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000509732 ENST00000505350 ENST00000507379 ENST00000508624 ENST00000257430(uc003kpz.4 uc003kpy.4 uc010jbz.3 uc010jca.3)
    ENST00000508376 ENST00000512211 ENST00000506342 ENST00000502371 ENST00000504915
    ENST00000505084 ENST00000514164 ENST00000457016(uc011cvt.2)

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    hsa-miR-579 hsa-miR-520e hsa-miR-300 hsa-miR-374a hsa-miR-519a hsa-miR-3916 hsa-miR-502-3p hsa-miR-3161
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    Inhib. RNA
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    Clone
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    GenScript: all cDNA clones in your preferred vector (see all 3): APC (NM_001127510)
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    Additional cDNA sequence: 

    AB210001.1 AF038181.1 AK289567.1 AK294544.1 AK309033.1 BC034955.1 BC056268.1 M73548.1 
    M74088.1 S56365.1 S67787.1 S67788.1 S67789.1 

    15 DOTS entries:

    DT.99981468  DT.120809542  DT.40310104  DT.95121675  DT.99962531  DT.119384  DT.95374795  DT.120809704 
    DT.120809770  DT.452608  DT.449103  DT.91757887  DT.100721411  DT.432665  DT.91950191 

    24/445 AceView cDNA sequences (see all 445):

    F04853 BF590515 D49676 BM723345 BU629028 F06864 BU618167 BF001542 
    R39002 AA829998 BG108327 AI566022 F02012 BM930344 F13412 F11337 
    T72565 F05691 AA344032 BX100792 BM977243 F12582 F01843 CA312933 

    GeneLoc Exon Structure

    3 Alternative Splicing Database (ASD) splice patterns (SP) for APC    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15a · 15b ^ 16 ^ 17
    SP1:                                                                                                              -               
    SP2:              -                                                                                                               
    SP3:                                                                                                                              


    ECgene alternative splicing isoforms for APC

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    APC expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    APC expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    3 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    LiverLiver LobulePeriportal HepatocytesLiver
    Paraxial MesodermParaxial MesodermParaxial Mesoderm CellsMesoderm
    EyeRetinaEye
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 1 LifeMap Cell 
    NameCategory
    Definitive endoderm-like cells (A scalable, suspensi...)

    See APC Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for APC

    SOURCE GeneReport for Unigene cluster: Hs.158932

    UniProtKB/Swiss-Prot: APC_HUMAN, P25054
    Tissue specificity: Expressed in a variety of tissues

        SABiosciences Expression via Pathway-Focused PCR Arrays including APC (see all 15): 
              Parkinson's Disease in human mouse rat
              Oncogenes & Tumor Suppressor Genes in human mouse rat
              Lung Cancer in human mouse rat
              Multiple Sclerosis in human mouse rat
              WNT Signaling Pathway in human mouse rat

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for APC
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat APC
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat APC
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat APC
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for APC

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for APC gene from 6/20 species (see all 20)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves APC1 adenomatous polyposis coli 80.69(n)
    85.58(a)
      415607  XM_001233410.2  XP_001233411.2 
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    --
    95(a)
    83(a)
    1 ↔ many
    1 ↔ many
    GL343193.1(6920773-6928072)
    GL343193.1(6928765-6980589)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.84362 Xenopus laevis adenomatous polyposis coli mRNA, complete more 78.78(n)    U64442.1 
    zebrafish
    (Danio rerio)
    Actinopterygii apc1 adenomatosis polyposis coli 66.81(n)
    70.85(a)
      386762  NM_001143840.1  NP_001137312.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta Apc3 frizzled-2 receptor signaling pathway
    microtubule more
    54(a)
    (best of 2)
        --
    worm
    (Caenorhabditis elegans)
    Secernentea apr-16
    Adenomatous polyposis coli protein-related protein...
    18(a)
    possible ortholog
    I(8050038-8055469)


    ENSEMBL Gene Tree for APC (if available)
    TreeFam Gene Tree for APC (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for APC gene
    APC22  ENSG000002588642  
    2 SIMAP similar genes for APC using alignment to 25 protein entries:     APC_HUMAN (see all proteins):
    APC variant protein    APC2

    APC for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    3436 NCBI SNPs in APC are shown (see top 10    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 5 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs4595521,2
    C,F,O,A,H,non-pathogenic112176756(-) TGAAGT/ACCTTG 6 /D /V mis1 ese342Minor allele frequency- A:0.15MN NA NS EA WA CSA EU 8811
    rs1378545671,2
    C,F,pathogenic107334073(+) AGATAC/TGCGCT 6 R C mis12Minor allele frequency- T:0.00NA EU 5871
    rs1378545801,2
    Cpathogenic107341994(+) TAAGAC/G/TGATAT 9 R G * mis1 stg11EU 1323
    rs1378545751,2
    C,F,pathogenic107353190(+) ACTTAA/C/TAATTT 9 * Y stg1 syn12NA EU 5701
    rs18011551,2
    C,Fpathogenic112175211(+) AGAAAT/AAAAAG 6 /K /I mis13Minor allele frequency- A:0.00EU NA 5971
    rs1219132241,2
    Cpathogenic112175218(+) AAAGA-/AAAGA 
            
    TTGGA
    6 DW EKI fra10--------
    rs18011661,2
    C,F,pathogenic112175240(+) CAGCTG/CAAGAT 6 /Q /E mis13Minor allele frequency- C:0.01NA EU 5859
    rs1219133271,2
    Cother107354397(+) GACTGC/TAGGGT 6 Q * stg10--------
    rs4643381,2
    C,F,H,other112064826(+) AAATTC/GTCTTA 1 -- int114Minor allele frequency- G:0.03NS EA NA WA CSA 551
    rs4693361,2
    C,F,H,other112066524(+) GTGTCC/GAACCT 1 -- int113Minor allele frequency- G:0.03NS EA NA WA CSA 550
    rs20197201,2
    C,F,O,A,H,other112074269(+) AACAGA/GTACCA 4 -- int124Minor allele frequency- G:0.49NA EA NS 1752
    rs20203831,2
    C,F,O,A,H,other112074356(+) TAGGCC/TGAAAA 4 -- int120Minor allele frequency- N:0.00NS EA NA WA CSA 1011
    rs47056081,2
    C,F,A,H,other112077447(+) AAAACA/TCTGTG 4 -- int19Minor allele frequency- T:0.50NS EA NA 652
    rs47056091,2
    C,F,A,H,other112077770(+) ATGCTG/ACTATG 4 -- int111Minor allele frequency- A:0.39NA WA CSA EA 374
    rs65946461,2
    C,F,A,H,other112081924(+) ACTTTA/GAAATA 4 -- int118Minor allele frequency- G:0.39NS EA NA WA 2342
    rs283737401,2
    C,F,other112085611(+) TTGTTG/TTTTTT 4 -- int1 trp36Minor allele frequency- T:0.42NA EA 248
    rs125180911,2
    C,F,H,other112086165(+) TTTTCT/ATGGCT 4 -- int1 trp311Minor allele frequency- A:0.43NS EA NA WA 778
    rs47056171,2
    C,F,A,H,other112088507(+) ATAAAA/GTTAGA 4 -- int117Minor allele frequency- G:0.05NS EA NA WA CSA 1456
    rs24395911,2
    C,F,O,A,H,other112089480(+) TTATTC/TTGTGT 4 -- int131Minor allele frequency- T:0.29NA NS EA WA CSA 2855
    rs40991811,2
    C,F,A,H,other112091704(-) AGAGGC/GAGAAA 3 -- int1 trp315Minor allele frequency- G:0.39NA NS EA CSA WA 913
    rs47054861,2
    C,F,A,H,other112092402(+) TACCCT/GTAGAT 3 -- int127Minor allele frequency- G:0.40NS EA NA WA 2900
    rs766413161,2
    C,other112093425(+) AAGTAC/GGTCTC 3 -- int10--------
    rs3699521,2
    C,F,H,other112093955(+) TGTGTG/AGTGTA 3 -- int114Minor allele frequency- A:0.03NS EA NA WA CSA 788
    rs760139571,2
    Cother112094300(+) ACAGGA/CATGAG 3 -- int10--------
    rs743948331,2
    Cother112094302(+) AGGCAG/TGAGCC 3 -- int10--------
    rs745785531,2
    Cother112094543(+) GATCCA/CCCCGC 3 -- int10--------
    rs25461161,2
    C,F,A,H,other112095332(+) CAGGCG/ATGAGC 3 -- int13Minor allele frequency- A:0.50NA 6
    rs778199221,2
    Cother112095333(+) AGGCGG/TGAGCC 3 -- int10--------
    rs797039801,2
    Cother112095499(+) GTATTA/TAAAAG 3 -- int10--------
    rs772809741,2
    Cother112095504(+) TAAAAC/GCTGCC 3 -- int10--------
    rs47056241,2
    C,F,A,H,other112095775(+) TAAGCT/AGAGAT 3 -- int114Minor allele frequency- A:0.41EA NS NA WA 800
    rs112411841,2
    C,F,A,H,other112097757(+) AAAAGG/ACAATC 3 -- int16Minor allele frequency- A:0.40NA EA 248
    rs3805891,2
    C,H,other112098911(-) CCACAT/CTTCCT 3 -- int19Minor allele frequency- C:0.02NA WA CSA EA 368
    rs96475821,2
    C,A,H,other112098938(+) TCAACT/AATTTT 3 -- int14Minor allele frequency- A:0.39NA WA EA 360
    rs96475831,2
    C,F,A,H,other112099028(+) ATGCAG/AACTTG 3 -- int12Minor allele frequency- A:0.41NA EA 240
    rs788807311,2
    Cother112099060(+) GCAGGG/TTTTTT 3 -- int10--------
    rs769944791,2
    Cother112099069(+) TTTTTC/TCTGTG 3 -- int10--------
    rs77034381,2
    C,F,A,H,other112099496(+) CCTGAG/AAACTT 3 -- int17Minor allele frequency- A:0.19EA NS CSA WA NA 652
    rs750752131,2
    Cother112099668(+) GGTGGC/GTCACG 3 -- int10--------
    rs77234231,2
    C,A,other112099690(+) AGCACC/TTTGGG 3 -- int11Minor allele frequency- T:0.50CSA 2
    rs794928421,2
    Cother112099793(+) AAAAAA/TTTAGC 3 -- int10--------
    rs68672431,2
    C,F,A,H,other112100027(+) CACTTA/GGGAAA 3 -- int112Minor allele frequency- G:0.38NA WA CSA EA 511
    rs750648581,2
    C,other112100295(+) GTCATA/GCAGAT 3 -- int11Minor allele frequency- G:0.01EA 120
    rs765963581,2
    C,other112100496(+) GAATTA/GGAATC 3 -- int10--------
    rs24648071,2
    C,H,other112100595(-) TGAATG/TTGAAT 3 -- int111Minor allele frequency- T:0.01NA WA CSA 254
    rs759500541,2
    C,F,other112100982(+) TGTTTT/GTTTAA 3 -- int11Minor allele frequency- G:0.03EA 120
    rs126591191,2
    C,F,H,other112101457(+) AAAGGT/GATTAC 3 -- int1 trp38Minor allele frequency- G:0.48NA CSA WA EA 367
    rs24648061,2
    C,A,H,other112101496(-) CACTAT/CTTCTT 3 -- int113Minor allele frequency- C:0.03NA WA CSA EA 375
    rs785191301,2
    C,other112101640(+) ATGTTC/G/TGTGCA 3 -- int10--------
    rs784189041,2
    C,F,other112101673(+) AACACA/GTAAGT 3 -- int12Minor allele frequency- G:0.08WA EA 238
    rs23047931,2
    C,F,H,other112101970(-) AAGACA/GTGATT 3 -- int129Minor allele frequency- G:0.13EA NS NA MN WA 4152
    rs780352341,2
    Cother112104061(+) TTACCC/AAAAAA 3 -- int11Minor allele frequency- A:0.50NA 2
    rs354149761,2
    C,F,other112104297(+) TTGCAG/ATCAGG 3 -- int15Minor allele frequency- A:0.42NA EA 246
    rs770102771,2
    C,F,other112105208(+) GGAACT/GTCGTC 3 -- int12Minor allele frequency- G:0.18WA EA 238
    rs623640161,2
    C,other112105218(+) CAAATG/TTTTTA 3 -- int11Minor allele frequency- T:0.50NA 2
    rs753723331,2
    C,other112105534(+) AAATAA/GGGATA 3 -- int10--------
    rs112411851,2
    C,F,A,H,other112107058(+) AATTTG/ATACCA 3 -- int117Minor allele frequency- A:0.41NS EA NA 2224
    rs68768671,2
    Cother112107084(+) TGCTAA/C/GAAGAC 3 -- int10--------
    rs784268731,2
    other112108013(+) AGTCAA/CAAGGT 3 -- int10--------
    rs783495761,2
    Cother112108019(+) AAGGTA/CAACTA 3 -- int10--------
    rs781125351,2
    Cother112108164(+) TCAACA/CCTGCC 3 -- int10--------
    rs27077631,2
    C,F,A,H,other112108865(+) AAGCTT/CATTTC 3 -- int114Minor allele frequency- C:0.45NA NS EA CSA WA 904
    rs755824231,2
    Cother112108962(+) CATATA/TTCCTA 3 -- int10--------
    rs18167691,2
    C,F,A,H,other112109779(+) TATAGC/GTATAA 3 -- int116Minor allele frequency- G:0.36NS EA NA CSA WA 920
    rs788009221,2
    C,other112109812(+) TATAAA/C/TAACAA 3 -- int10--------
    rs798015201,2
    C,other112110003(+) GTAACA/GTGATG 3 -- int10--------
    rs746393381,2
    C,F,other112110660(+) GAAAAG/AAGATA 3 -- int12Minor allele frequency- A:0.09WA EA 238
    rs3921791,2
    C,A,H,other112111070(+) CCTTTA/GGTGAA 3 -- int111Minor allele frequency- G:0.03NA WA CSA EA 373
    rs789198151,2
    C,other112111310(+) TTTTTA/TAAAAA 3 -- int10--------
    rs744715741,2
    Cother112111463(+) TATTTG/TAAACT 3 -- int10--------
    rs4589061,2
    C,F,O,A,other112111866(+) CAATAC/GCTATA 3 -- int110Minor allele frequency- G:0.49NA EA 392
    rs800673671,2
    C,other112112113(+) CACCGA/GTTTAT 3 -- int10--------
    rs763822241,2
    Cother112112747(+) GGCTGC/GTTTAA 3 -- int10--------
    rs802875871,2
    Cother112112751(+) GCTTTA/TAAATT 3 -- int10--------
    rs77073391,2
    C,F,other112112855(+) TCTTAG/AATTGT 3 -- int13Minor allele frequency- A:0.12WA NA EA 358
    rs795286411,2
    Cother112112911(+) GTTTTG/TGTAAA 3 -- int10--------
    rs779413891,2
    C,F,other112112951(+) TTACGT/CGTGCA 3 -- int11Minor allele frequency- C:0.19WA 118
    rs769775701,2
    Cother112113202(+) TAATGA/CAAAAG 3 -- int10--------
    rs4670331,2
    C,F,O,A,H,other112113527(+) TCAAGA/TCATCT 3 -- int120Minor allele frequency- T:0.39NS EA NA WA 2336
    rs3963211,2
    C,F,A,H,other112113735(+) CCTTCC/TGCTTA 3 -- int122Minor allele frequency- T:0.39NA NS EA CSA WA 2361
    rs4019081,2
    C,F,A,other112113760(+) TTTCCC/TATTCA 3 -- int112Minor allele frequency- T:0.26WA NA CSA EA 375
    rs4140981,2
    C,F,O,A,H,other112113772(+) TACACA/GTCAGT 3 -- int110Minor allele frequency- G:0.49NS EA NA 660
    rs752467121,2
    Cother112114067(+) GGCTGC/GGTCAG 3 -- int10--------
    rs787061821,2
    Cother112114180(+) AAAAAA/GAAAAT 3 -- int10--------
    rs758824321,2
    Cother112114521(+) AGGTGG/TGAGCC 3 -- int10--------
    rs783701281,2
    C,other112115377(+) TTTTTG/TCAGAG 3 -- int11Minor allele frequency- T:0.50NA 2
    rs351302251,2
    C,F,other112116069(+) AGTATA/GAGCTT 3 -- int113Minor allele frequency- G:0.35NA WA CSA EA 378
    rs27077651,2
    C,F,A,H,other112122532(-) GTCCAG/CAAAAC 4 -- int110Minor allele frequency- C:0.48NS EA NA 666
    rs751114751,2
    C,other112128249(+) CTTGTC/G/TTGTGG 3 -- int10--------
    rs796273251,2
    C,F,other112128314(+) CACCAT/CTGAAA 3 -- int11Minor allele frequency- C:0.05EA 120
    rs752484041,2
    C,F,other112128673(+) AAAGCA/GGGTAA 3 -- int12Minor allele frequency- G:0.16WA EA 238
    rs750757081,2
    other112129194(+) GACTTA/TCATGG 3 -- int10--------
    rs791846581,2
    C,other112129195(+) ACTTAA/CATGGA 3 -- int10--------
    rs796314891,2
    Cother112129196(+) CTTACA/TTGGAA 3 -- int10--------
    rs669640651,2
    C,other112129754(+) AAAAAG/AGTAGG 3 -- int11Minor allele frequency- A:0.50WA 2
    rs747258691,2
    Cother112130056(+) ACAGGC/GGTGAG 3 -- int10--------
    rs17342431,2
    C,F,A,other112130086(+) TTAAAA/CCTTTT 3 -- int110Minor allele frequency- C:0.34NA WA CSA EA 371
    rs24315141,2
    C,F,A,other112131288(+) CCCCTG/ATCACT 3 -- int19Minor allele frequency- A:0.38NA CSA EA 253
    rs24648031,2
    C,F,A,H,other112131787(-) GTTCAT/CTTGGG 3 -- int127Minor allele frequency- C:0.43NS EA NA WA 3126
    rs787044211,2
    Cother112132534(+) CCCCCA/TTCTTT 3 -- int10--------
    rs762934601,2
    C,other112132707(+) ATTTAA/TTAATA 3 -- int10--------
    rs768045421,2
    C,other112132948(+) AGAACA/GAAACC 3 -- int13Minor allele frequency- G:0.07CSA WA EA 240
    rs759488981,2
    other112133846(+) TTTTTA/CATAAT 3 -- int10--------
    rs765002741,2
    C,other112134643(+) GGCTCA/CTGCCT 3 -- int10--------
    rs16442401,2
    C,F,A,other112134837(-) atggcG/Acaatc 3 -- int13Minor allele frequency- A:0.10WA CSA EA 124
    rs5179471,2
    C,H,other112135067(+) AGGAAC/TGTAGG 3 -- int112Minor allele frequency- T:0.01NA WA CSA EA 374
    rs781933321,2
    C,F,other112135499(+) ATTCGT/ATGACA 3 -- int12Minor allele frequency- A:0.15WA EA 238
    rs775531561,2
    C,other112136846(+) ATACAC/GAGTTC 3 -- int10--------
    rs778625701,2
    C,F,other112138189(+) ACATAG/AGAATA 3 -- int12Minor allele frequency- A:0.15WA EA 238
    rs777446081,2
    C,F,other112138542(+) CGTGTA/GAAAAG 3 -- int13Minor allele frequency- G:0.04WA NA EA 358
    rs5290761,2
    C,F,other112138734(+) AGATGA/GTCAAC 3 -- int111Minor allele frequency- G:0.27NA WA CSA EA 373
    rs29526151,2
    C,F,H,other112138888(-) GAAAGG/CCTGTT 3 -- int114Minor allele frequency- C:0.34NS EA NA WA CSA 789
    rs751156541,2
    other112139634(+) CTCCCA/CTATAT 3 -- int10--------
    rs25451581,2
    C,F,O,A,H,other112139745(+) TGAGTA/GTGTCC 3 -- int111Minor allele frequency- N:0.00EA NA WA 558
    rs171349451,2
    C,F,H,other112140022(+) AACTAA/GTATGT 3 -- int119Minor allele frequency- G:0.10NA NS EA CSA WA 2242
    rs750202011,2
    Cother112140356(+) AGGCGG/TGAGCC 3 -- int10--------
    rs798225571,2
    C,other112140570(+) GCTACG/TTGGGA 3 -- int10--------
    rs784733241,2
    Cother112140705(+) AAAAAA/TAAAAA 3 -- int10--------
    rs793818771,2
    C,F,other112140749(+) TATACA/GTATGT 3 -- int11Minor allele frequency- G:0.04EA 120
    rs796271261,2
    C,other112140941(+) GAAAAT/CAGAAG 3 -- int14Minor allele frequency- C:0.11CSA WA NA EA 360
    rs751653251,2
    C,F,other112141153(+) AGTATG/ATTTGT 3 -- int12Minor allele frequency- A:0.05WA EA 238
    rs794153401,2
    C,other112141410(+) TTGCTA/CAAAAG 3 -- int10--------
    rs770265381,2
    Cother112141747(+) CCTTCC/TCCTAC 3 -- int10--------
    rs780884371,2
    Cother112141751(+) CTCCTA/CCCACA 3 -- int10--------
    rs757846851,2
    C,other112141754(+) CTACCA/CCAGCC 3 -- int10--------
    rs791471571,2
    Cother112142361(+) CCTCTC/GCCTCC 3 -- int10--------
    rs764270521,2
    Cother112142364(+) CTGCCC/TCCCAG 3 -- int10--------
    rs797371751,2
    Cother112142373(+) AGGCTA/CAAGCC 3 -- int10--------
    rs19141,2
    C,F,A,H,other112144444(-) CAAAAA/TCTAGA 3 -- int19Minor allele frequency- T:0.49NS EA NA 664
    rs25461061,2
    C,F,A,H,other112145261(+) CATTGC/ACATGA 3 -- int128Minor allele frequency- A:0.43NS EA NA CSA 3014
    rs4548861,2
    C,F,O,H,other112146117(-) AAAACT/CGTGGC 3 -- int119Minor allele frequency- C:0.34NS EA NA 2354
    rs3900921,2
    C,F,A,H,other112146197(-) CTATAA/CCTGCC 3 -- int114Minor allele frequency- C:0.43EA NS NA WA 808
    rs754951651,2
    C,other112146264(+) AGTTAC/TGTAAG 3 -- int11Minor allele frequency- T:0.01EA 120
    rs795123271,2
    Cother112149351(+) GGCTCC/GTGCCT 3 -- int10--------
    rs25451691,2
    C,F,A,H,other112149757(-) TCTTAG/AGCTTA 3 -- int125Minor allele frequency- A:0.21NS EA WA NA CSA 2766
    rs747964121,2
    C,F,other112149969(+) TTTATC/TTGCAA 3 -- int11Minor allele frequency- T:0.02EA 120
    rs761285751,2
    Cother112151834(+) ATTGGG/TGGGGA 3 -- int10--------
    rs171349601,2
    C,F,H,other112152206(+) TTACTT/GTAAGC 3 -- int112Minor allele frequency- G:0.12NA NS EA CSA WA 924
    rs748587371,2
    Cother112152224(+) GGTGGC/GTCACA 3 -- int10--------
    rs762388411,2
    Cother112152227(+) GGCTCA/CCACCT 3 -- int10--------
    rs791711671,2
    Cother112152233(+) CACCTG/TTAATC 3 -- int10--------
    rs789249991,2
    C,F,other112152830(+) CCAAAG/ATGCTG 3 -- int11Minor allele frequency- A:0.03EA 120
    rs171641321,2
    C,F,H,other112152920(+) CTAAAC/TGATGT 3 -- int121Minor allele frequency- T:0.17NA NS EA WA CSA 2266
    rs25451651,2
    C,F,O,H,other112153119(-) CATATA/GAGGTC 3 -- int116Minor allele frequency- G:0.31NA NS EA WA CSA 926
    rs750758001,2
    Cother112153172(+) CTCTCA/CAAAAT 3 -- int10--------
    rs3929071,2
    C,F,A,H,other112153495(+) CTCAGG/AAAACT 3 -- int115Minor allele frequency- A:0.24NS EA NA WA CSA 779
    rs25451641,2
    C,F,O,A,H,other112153665(-) CTTTAA/GATGCG 3 -- int115Minor allele frequency- G:0.32NA WA CSA EA 514
    rs787514661,2
    C,other112153757(+) CCCACT/CAGATT 3 -- int13Minor allele frequency- C:0.15CSA WA EA 240
    rs773789811,2
    C,F,other112153861(+) GAGAAC/ACATTG 3 -- int11Minor allele frequency- A:0.07EA 120
    rs769778271,2
    Cother112154154(+) TAATAA/TTATCA 3 -- int10--------
    rs783733071,2
    Cother112154155(+) AATATC/TATCAT 3 -- int10--------
    rs726633151,2
    C,other112154531(+) TTTTTT/GTTTTT 3 -- int11Minor allele frequency- G:0.00CSA 1
    rs777664081,2
    Cother112154541(+) TTTTTG/TGGCGG 3 -- int10--------
    rs786023511,2
    Cother112154544(+) TTTGGC/GGGGGG 3 -- int10--------
    rs779076791,2
    C,other112155003(+) GCAGGA/GAGCTC 6 E G mis10--------
    rs747360321,2
    Cother112155410(+) GTGTCA/CAAACC 3 -- int10--------
    rs25451631,2
    C,F,A,H,other112155504(-) CTTCAC/GTAGGT 3 -- int116Minor allele frequency- G:0.26NS EA NA WA CSA 787
    rs5012501,2
    C,F,H,other112155793(+) CTATGC/GGGATA 3 -- int125Minor allele frequency- G:0.32NS EA WA NA CSA 2765
    rs757103831,2
    Cother112156080(+) GGTGGG/TTCATG 3 -- int10--------
    rs798513831,2
    Cother112156099(+) GGCAGC/GACTTT 3 -- int10--------
    rs68857681,2
    C,F,other112156863(+) ACCTAG/CCACCA 3 -- int17Minor allele frequency- C:0.21WA NA CSA EA 365
    rs25451621,2
    C,F,O,A,H,other112158431(-) TTAAGT/CGTATG 3 -- int129Minor allele frequency- C:0.34NA NS EA WA CSA 2907
    rs775518341,2
    C,F,other112158480(+) CGTTTA/TTGTTA 3 -- int11Minor allele frequency- T:0.07EA 120
    rs784752741,2
    Cother112158494(+) TATGTC/TCCAGC 3 -- int10--------
    rs790839291,2
    C,other112159360(+) TTAGAA/GGTTTT 3 -- int14Minor allele frequency- G:0.10CSA WA NA EA 360
    rs25451601,2
    C,H,other112159385(-) ACATAC/TATCAT 3 -- int117Minor allele frequency- T:0.01NS EA NA WA CSA 781
    rs25461071,2
    C,F,O,other112159470(+) CTTTCG/AGGGAA 3 -- int18Minor allele frequency- A:0.48NA EA 388
    rs754916441,2
    C,F,other112159545(+) TCGTCA/CAACTG 3 -- int13Minor allele frequency- C:0.03WA NA EA 358
    rs25451591,2
    C,F,O,A,other112159562(-) TACAGC/TGCCAG 3 -- int115Minor allele frequency- T:0.17EA NA WA CSA 585
    rs758212021,2
    Cother112160462(+) GGCCAA/TGTCTT 3 -- int10--------
    rs779484031,2
    Cother112160463(+) GCCAAC/GTCTTA 3 -- int10--------
    rs790324231,2
    Cother112160936(+) CTTCAC/TCCCCA 3 -- int10--------
    rs25461081,2
    C,F,A,H,other112161469(+) TTTTTC/ATTATG 3 -- int1 trp331Minor allele frequency- A:0.42NS EA NA WA 3264
    rs737892111,2
    Cother112162299(+) AAAAAC/AAAAAC 3 -- int11Minor allele frequency- A:0.50WA 2
    rs25461101,2
    C,F,O,A,H,other112162413(+) TGACAA/GTAAAG 3 -- int120Minor allele frequency- G:0.47NA NS EA 2360
    rs22299921,2
    C,F,O,A,H,other112162854(+) ATGTAC/TGGGCT 6 Y syn131Minor allele frequency- A:0.00MN NS EA NA WA EU 8917
    rs759418451,2
    other112163242(+) AGTTTA/TACTGT 3 -- int10--------
    rs747259351,2
    Cother112163838(+) AGCAAC/TCCTCC 3 -- int10--------
    rs1870751,2
    C,F,other112164238(+) TCAAGT/CTCCTG 3 -- int112Minor allele frequency- C:0.34NA WA CSA EA 375
    rs3517721,2
    C,F,A,other112164862(+) ATGGGG/ATCTCT 3 -- int110Minor allele frequency- A:0.47MN NA CSA WA EA 554
    rs801647751,2
    Cother112165114(+) AGGCGA/CAAGCC 3 -- int10--------
    rs768391551,2
    C,F,other112165375(+) ACCCTC/TCCCCT 3 -- int11Minor allele frequency- T:0.04EA 120
    rs796369001,2
    Cother112165722(+) GCTAGC/TCCTCC 3 -- int10--------
    rs751901041,2
    C,F,other112165989(+) TGGCCG/AATAAG 3 -- int12Minor allele frequency- A:0.15WA EA 238
    rs745315931,2
    Cother112166046(+) TAAAAA/CTACAA 3 -- int10--------
    rs671115991,2
    C,other112166047(+) AAAACA/TACAAT 3 -- int10--------
    rs787985271,2
    other112166213(+) CATACA/CCCTGC 3 -- int10--------
    rs752091531,2
    Cother112166479(+) TTGGGA/GGTAGA 3 -- int10--------
    rs800722601,2
    Cother112166569(+) TTTATG/TGGTGT 3 -- int10--------
    rs763028941,2
    Cother112166825(+) TTTTTG/TAGATG 3 -- int10--------
    rs5487101,2
    C,F,other112167587(+) ACCTTT/CGTGTA 3 -- int116Minor allele frequency- C:0.48EA NA MN 982
    rs5699401,2
    C,F,other112167821(+) ATAACT/CTCTAA 3 -- int110Minor allele frequency- C:0.37NA WA CSA EA 371
    rs119602161,2
    C,H,other112167921(+) CTTTTG/ATATTT 3 -- int14Minor allele frequency- A:0.11CSA WA NA EA 360
    rs29099581,2
    C,F,O,A,H,other112167941(+) CAACTG/CTCAAC 3 -- int193Minor allele frequency- C:0.24NS EA PA EU CA WA NA CSA 4743
    rs29097861,2
    C,F,A,H,other112168065(+) TCTTGG/ATTGAT 3 -- int199Minor allele frequency- A:0.23EA NS PA EU CA WA MN NA CSA 6241
    rs29097871,2
    C,F,O,A,H,other112168130(+) CTTATC/GTGACA 3 -- int1100Minor allele frequency- G:0.22EA NS PA EU CA WA MN NA CSA 6641
    rs800726251,2
    Cother112168379(+) CTACTC/TCCCCT 3 -- int10--------
    rs25461111,2
    C,F,A,H,other112169525(+) ACCACA/TTGTAT 3 -- int111Minor allele frequency- T:0.27NA WA CSA EA 373
    rs9183971,2
    C,F,other112169624(-) ATACAT/CAGATA 3 -- int16Minor allele frequency- C:0.17WA CSA NA EA 364
    rs765776541,2
    C,F,other112169890(+) GTCAGC/GCTTCC 3 -- int12Minor allele frequency- G:0.15WA EA 238
    rs3969711,2
    Cother112169958(-) CTTTTA/TAAAAA 3 -- int10--------
    rs778077201,2
    Cother112170071(+) GTAGCG/TGGGAT 3 -- int10--------
    rs747974731,2
    Cother112170074(+) GCTGGA/GATTAC 3 -- int10--------
    rs773049991,2
    Cother112170082(+) TACAGC/GCACCT 3 -- int10--------
    rs788978721,2
    Cother112170084(+) CAGGCA/CCCTGC 3 -- int10--------
    rs798264111,2
    Cother112170221(+) AGGCAG/TGAGCC 3 -- int10--------
    rs775047261,2
    C,F,other112170285(+) TTCTTT/ATTTCA 3 -- int11Minor allele frequency- A:0.09EA 120
    rs4589671,2
    C,F,A,other112170358(-) CACAAT/CTGATG 3 -- int111Minor allele frequency- C:0.26WA NA CSA EA 375
    rs768361901,2
    Cother112170436(+) ATATTG/TTGTTC 3 -- int10--------
    rs751170391,2
    C,other112170816(+) GTGGGA/GTATTA 6 I V mis10--------
    rs626263461,2
    C,F,other112170870(-) ACTCTA/GTATAT 3 -- int13Minor allele frequency- G:0.01EU EA 1075
    rs68991691,2
    C,F,other112171097(+) AGCCCA/GTAGGT 3 -- int12Minor allele frequency- G:0.14WA EA 238
    rs747350481,2
    Cother112171250(+) GATGTC/TTTAGT 3 -- int10--------
    rs797269491,2
    Cother112171254(+) TCTTAG/TTATCC 3 -- int10--------
    rs753509351,2
    Cother112171285(+) TTTTTG/TTTGAG 3 -- int11Minor allele frequency- T:0.00NA 2
    rs765372651,2
    Cother112171691(+) ATCAAA/CAAAAA 3 -- int10--------
    rs790311871,2
    Cother112171722(+) TTTTTC/TTTTTT 3 -- int10--------
    rs4113561,2
    C,F,A,H,other112172219(-) ATATTT/CAGCTT 3 -- int122Minor allele frequency- C:0.34NS EA NA WA CSA 2343
    rs758246171,2
    Cother112172679(+) AGGCAG/TGAGCC 3 -- int10--------
    rs19664771,2
    C,F,O,A,other112172786(-) ATAAGA/CTCTTA 3 -- int111Minor allele frequency- C:0.35NA WA CSA EA 372
    rs19664761,2
    C,F,O,A,H,other112172930(-) AAACTA/GTATCA 3 -- int18Minor allele frequency- G:0.46NA WA EA 368
    rs745712711,2
    Cother112173105(+) TGAAAA/TTAGAA 3 -- int10--------
    rs752662001,2
    Cother112173106(+) GAAATA/TAGAAC 3 -- int10--------
    rs786115691,2
    C,other112173111(+) TAGAAA/CAAAAG 3 -- int10--------
    rs765657991,2
    C,other112173112(+) AGAACA/GAAAGG 3 -- int10--------
    rs801881551,2
    Cother112173676(+) AGTCTC/TTATGG 6 L syn10--------
    rs798530771,2
    Cother112173695(+) TTTTTG/TACACC 6 D Y mis10--------
    rs791222631,2
    Cother112175021(+) AGCCTA/CAAAAG 6 K Q mis10--------
    rs745355741,2
    Cother112175576(+) CTGGAA/C/TAAACC 9 K Q * mis1 stg10--------
    rs411151,2
    C,F,O,A,H,other112175770(-) CTTTCC/TGTGGC 6 T syn1 ese339Minor allele frequency- N:0.00MN EA NA NS WA CSA EU 8740
    rs424271,2
    C,F,A,H,other112176325(+) GGAGGA/GGCACA 6 G syn1 ese3 trp334Minor allele frequency- G:0.39MN NA NS EA WA CSA EU 8768
    rs8660061,2
    C,F,O,A,H,other112176559(-) GAAGAC/AGACGC 6 /S syn1 ese337Minor allele frequency- A:0.39MN NA NS EA WA CSA EU 8662
    rs4658991,2
    C,F,A,H,other112177171(-) CAAACT/CGGAGT 6 /P syn1 ese3118Minor allele frequency- C:0.33EA NA MN NS PA EU CA WA CSA 12756
    rs752071191,2
    Cother112178340(+) ATCATA/C/TCCCTA 9 Y S F mis10--------
    rs785561451,2
    Cother112178341(+) TCATCA/CCCTAG 6 S syn10--------
    rs769334161,2
    Cother112179425(+) GTGTTC/TCCATG 6 P S mis10--------
    rs18041971,2
    C,F,A,H,other112179909(+) AAAGAC/ATGAAA 3 -- ut316Minor allele frequency- A:0.15MN NA WA EA 564
    rs794147271,2
    Cother112179958(+) TGTTCG/TGGAAG 3 -- ut310--------
    rs793790531,2
    Cother112180228(+) TTATGA/CAAAAA 3 -- ut310--------
    rs121891,2
    C,F,A,H,other112180257(+) TGAGTC/TCATCT 3 -- ut31 ese319Minor allele frequency- T:0.13MN NS EA NA WA 2544
    rs745031381,2
    Cother112180290(+) CTGTGA/GAATTC 3 -- ut310--------
    rs411161,2
    C,F,A,H,other112180921(+) TTTAAC/TATTTT 3 -- ut318Minor allele frequency- T:0.47NA EA 388
    rs37339611,2
    C,F,A,H,other112181283(-) TAATCG/ATATTA 3 -- ut31 ese320Minor allele frequency- A:0.13EA NS NA WA 3958
    rs4484751,2
    C,F,O,A,H,other112181379(-) TATAAC/GGGGAC 3 -- ut31 ese313Minor allele frequency- G:0.45MN NA EA 934
    rs3977681,2
    C,F,A,H,other112181576(+) GGGAGA/GGAAAA 3 -- ut31 ese3 trp314Minor allele frequency- G:0.35MN NA WA CSA EA 697
    rs4334291,2
    C,F,O,A,H,other112182232(+) TAGAGT/ATAGTG 4 -- ds500115Minor allele frequency- A:0.32NA WA CSA EA 517
    rs3868301,2
    C,F,A,H,other112182379(-) AACTCT/CTGACT 4 -- ds500114Minor allele frequency- C:0.32NA WA CSA EA 515
    rs780023731,2
    Cother160591903(+) GGGGGA/GGGGAG 4 -- ds50010--------
    rs761309551,2
    Cother160591947(+) GTTGGA/GAATTA 4 -- ds50010--------
    rs773330761,2
    Cother160591950(+) CAGCGG/TTGGGA 4 -- ds50010--------
    rs752938931,2
    Cother160592196(+) GAACAG/TTCCAC 4 -- ds50010--------
    rs778434031,2
    Cother160592198(+) ATGAAC/GATTCC 4 -- ds50010--------
    rs785164261,2
    Cother160592204(+) AATGAA/TCATTC 4 -- ds50010--------
    rs779396721,2
    Cother160646233(+) AAGTGG/TTAGCC 4 -- int10--------
    rs795265871,2
    Cother160646243(+) CTGAGC/TTTTTA 4 -- int10--------
    rs799498371,2
    C,F,other160647956(+) AGTTTT/CCTGTT 4 -- int13Minor allele frequency- C:0.11WA NA EA 358
    rs752059951,2
    Cother160647991(+) CGTGAC/GCCACC 4 -- int10--------
    rs780170531,2
    Cother160648636(+) CATCCC/TCCCTC 4 -- int10--------
    rs772718241,2
    Cother160648639(+) AGCCAA/C/TCCTCC 4 -- int10--------
    rs764254291,2
    Cother160648734(+) TTTTTC/TCTATT 4 -- int10--------
    rs17342421,2
    C,F,O,H,other160648882(+) TAGGAA/GGTACT 4 -- int115Minor allele frequency- G:0.24EA NA NS WA CSA 996
    rs779793611,2
    C,other160649198(+) GGCTTC/TTTCTA 4 -- int10--------
    rs758222441,2
    Cother160651708(+) TTTTTC/TTTTTT 4 -- int10--------
    rs769039621,2
    Cother160653330(+) GGTTTG/TCCTAG 4 -- int10--------
    rs789711331,2
    C,other160655090(+) CAACCA/CTGCCA 4 -- int13Minor allele frequency- C:0.17CSA WA EA 240
    rs760616361,2
    C,other160655165(+) AAATGT/GTGGTA 4 -- int13Minor allele frequency- G:0.12CSA WA EA 240
    rs24315121,2
    C,F,O,A,H,other160655341(+) TGATAC/TTGTCA 4 -- int121Minor allele frequency- T:0.38NS EA NA WA 2522
    rs24312421,2
    C,F,O,A,other160656102(+) TCATAA/GTGAAG 4 -- int112Minor allele frequency- G:0.39NA CSA WA EA 504
    rs801917771,2
    Cother160657125(+) ATGTTC/TTAAAG 4 -- int10--------
    rs22894841,2
    C,F,A,H,other160657524(-) AACTAT/CGTGAA 4 -- int123Minor allele frequency- C:0.46NS EA NA CSA WA 2420
    rs22894851,2
    C,F,H,other160657568(-) CTTATT/GTTGAA 4 -- int111Minor allele frequency- G:0.11NS EA CSA WA 1538
    rs770907221,2
    Cother160683776(+) AACAAC/GCAGCC 4 -- int10--------
    rs792344131,2
    Cother160683779(+) AAAAAA/CAAGCA 4 -- int10--------
    rs768651481,2
    other160683785(+) TTCTTA/TAAAAA 4 -- int10--------
    rs788106091,2
    Cother160683973(+) GAAGGC/GAAATG 4 -- int10--------
    rs746983681,2
    Cother160684689(+) TATTTG/TTTCCA 4 -- int10--------
    rs112411831,2
    C,F,A,H,other160685011(+) GACTTT/CTGTAG 4 -- int111Minor allele frequency- C:0.40NA WA EA 510
    rs68914481,2
    C,F,H,other160685689(+) AAGAGT/GTGATT 4 -- int17Minor allele frequency- G:0.07NS EA WA NA 776
    rs119506121,2
    C,F,H,other160687419(+) ATTCCC/TCAGAT 4 -- int116Minor allele frequency- T:0.19NS EA CSA WA 2192
    rs802880371,2
    Cother160688362(+) GATTAA/CAAGCA 4 -- int10--------
    rs758488651,2
    C,F,other160688797(+) GTTGTA/GGAACT 4 -- int12Minor allele frequency- G:0.17WA EA 238
    rs754486771,2
    Cother160689045(+) TCTTGC/GCTTAC 4 -- int10--------
    rs792804191,2
    Cother160689962(+) GGCGGA/GTCACT 4 -- int10--------
    rs783830741,2
    Cother160691349(+) GAAAAA/CCCTGG 4 -- int10--------
    rs21122101,2
    C,other160691353(+) GGGGGA/GAAACC 4 -- int1 trp30--------
    rs756038621,2
    Cother160691426(+) CAACTA/CAAATA 4 -- int10--------
    rs761476661,2
    C,other160692205(+) AGCATA/C/TAGCTT 4 -- int10--------
    rs773997111,2
    Cother160692609(+) TTTTGG/TTAAAC 4 -- int10--------
    rs801933441,2
    Cother160692610(+) GTTTTG/TGTAAA 4 -- int10--------
    rs794822411,2
    Cother160692883(+) GCGGGG/TGCCAC 4 -- int10--------
    rs793347851,2
    C,F,other160692917(+) ACCCCC/ACCACC 4 -- int12Minor allele frequency- A:0.47NA EA 240
    rs770545731,2
    Cother160693468(+) TGCTGG/TTCAGT 4 -- int10--------
    rs796559151,2
    Cother160693469(+) ATGCTA/GGTCAG 4 -- int10--------
    rs769784591,2
    Cother160693868(+) AAGTGA/TGGAGA 4 -- int10--------
    rs100714251,2
    C,F,other160694414(+) AACACG/TCCCTT 4 -- int18Minor allele frequency- T:0.47NA EA 388
    rs800632881,2
    other160695171(+) TTTTTA/TAAGCT 4 -- int10--------
    rs792787121,2
    other160696003(+) CTATTG/TGCAAG 4 -- int10--------
    rs47056101,2
    C,F,A,H,other160696375(+) AGTTTC/GTGATG 4 -- int1108Minor allele frequency- G:0.47NS EA NA PA EU CA WA 6848
    rs77066231,2
    C,F,A,H,other160696614(+) ATGTTC/TCATTG 4 -- int118Minor allele frequency- T:0.17