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Aliases & Descriptions for APBB2
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| DKFZp434E033 2 | | FE65L 1, 2, 3 | | FE65L1 1, 2, 3, 5 | | Fe65-like 2 | | MGC35575 1, 2 |
| | | Descriptions |
|---|
| Fe65-like protein 3 | amyloid beta (A4) precursor protein-binding, family B, member 2 2 | amyloid beta A4 precursor protein-binding, family B, member 2 2 | | amyloid beta precursor protein-binding, family B, member 2 1 |
|
| | Search outside databases for aliases for APBB2 genePrevious GC identifers: GC04M040883 GC04M041100 GC04M040666 GC04M040732 GC04M040657 |
Summaries for APBB2(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for APBB2: The protein encoded by this gene interacts with the cytoplasmic domains of amyloid beta (A4) precursor protein and amyloid beta (A4) precursor-like protein 2. This protein contains two phosphotyrosine binding (PTB) domains, which are thought to function in signal transduction. [provided by RefSeq] UniProtKB/Swiss-Prot: APBB2_HUMAN, Q92870Function: May modulate the internalization of beta-amyloid precursor proteinGene Wiki entry for APBB2 |
Genomic Location for APBB2
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the APBB2 gene 
Entrez Gene cytogenetic band: 4p14-p13 Ensembl cytogenetic band: 4p13 HGNC cytogenetic band: 4p13APBB2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure GeneLoc location for GC04M040510:
(about GC identifiers)
Start:
|
40,510,996 bp from pter |
End:
|
40,911,245 bp from pter |
Size:
|
400,250 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000004.10 NT_006238.10
| Proteins for APBB2
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: APBB2_HUMAN, Q92870 (See
protein sequence)Recommended Name: Amyloid beta A4 precursor protein-binding family B member 2 Size: 758 amino acids; 83346 Da
Subunit: Binds to the intracellular domain of the beta-amyloid precursor protein
Secondary accessions: Q8IUI6Alternative splicing: 2 isoforms: Q92870-1 Q92870-2 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_775098.2
ENSEMBL proteins: ENSP00000318965 ENSP00000295974
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for APBB2: Assays for APBB2: | Protein
Domains/ Families for APBB2(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q92870
ProtoNet protein and cluster: Q92870 1 Blocks protein family: IPB006020 Phosphotyrosine interaction domain
UniProtKB/Swiss-Prot: APBB2_HUMAN, Q92870Similarity: Contains 2 PID domainsSimilarity: Contains 1 WW domain | Gene Function for APBB2
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_173075
Applied Biosystems Silencer® siRNAs for APBB2
Sigma-Aldrich siRNA for APBB2  Sigma-Aldrich shRNA for APBB2  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_173075                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_173075                                  untagged cDNA clone in CMV expression vector: NM_173075 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_173075
UniProtKB/Swiss-Prot: APBB2_HUMAN, Q92870Function: May modulate the internalization of beta-amyloid precursor proteinGenatlas biochemistry entry for APBB2:amyloid beta (A4) precursor binding protein B2,murine homolog of Fe65 like gene4 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Apbb2):
2 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0001540 | beta-amyloid binding |
ISS | -- | | GO:0008134 | transcription factor binding |
ISS | -- | About this table | Pathways & Interactions for APBB2
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for APBB2 
5/11 Interacting proteins for APBB2 (Q928701, 2 ENSP000003189653) via UniProtKB, MINT, and/or STRING (see all 11
)About this table
5 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0007050 | cell cycle arrest |
ISS | -- | | GO:0007242 | intracellular signaling cascade |
NAS | 8855266 | | GO:0030308 | negative regulation of cell growth |
ISS | -- | | GO:0045449 | regulation of transcription |
ISS | -- | | GO:0045749 | negative regulation of S phase of mitotic cell cycle |
ISS | -- | About this table
|
Drugs & Compounds for APBB2(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for APBB2
|
Transcripts for APBB2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_173075
Sigma-Aldrich siRNA for APBB2  Sigma-Aldrich shRNA for APBB2  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_173075 REFSEQ mRNAs for APBB2 gene: NM_173075.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_173075               OriGene GFP tagged cDNA clone in CMV expression vector: NM_173075                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_173075                                  untagged cDNA clone in CMV expression vector: NM_173075  Additional cDNA sequence: AK024871.1 AK226179.1 AK289838.1 AK295974.1 AK299800.1 AK304247.1 AL080130.1 BC027946.1 BC088372.1 CR607261.1 CR620312.1 CR621132.1 18 DOTS entries: DT.455435 DT.306651 DT.100805276 DT.100810565 DT.121255262 DT.97767831 DT.99935411 DT.100028433 DT.100805280 DT.91697646 DT.95366170 DT.121255397 DT.121255407 DT.121255448 DT.75120714 DT.95183247 DT.99971214 DT.40281203 24/236 AceView cDNA sequences (see all 236
):NM_173075 BF223603 BM705373 BG023881 CD724004 BM142507 AL600779 BX394412 BC027946 AW874579 CD171921 Z39250 BQ718072 BQ925153 BM722912 BM023404 AI400246 T48927 AA866113 BU552516 AI919212 AL080130 AI242691 CR621132
highest scoring ESTs for APBB2:AA976074 AL582952 AL596608 BI769270 BI918204 AA016163 AA374714 AA448591 AA496214 AA496226 Unigene Cluster for APBB2: Amyloid beta (A4) precursor protein-binding, family B, member 2 Hs.479602 [show with all ESTs]Unigene Representative Sequence: NM_173075
GeneLoc Exon Structure
5/8 Alternative Splicing Database (ASD) splice patterns (SP) for APBB2 (see all 8
)
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7a | · | 7b | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11a | · | 11b | ^ | 12a | · | 12b | ^ | 13 | ^ | 14a | · | 14b | · | 14c | ^ | 15 | ^ | 16 | ^ | 17 | ^ | 18 | ^ | 19 | ^ | 20 | ^ | |
| SP1: | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | - |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 21a | · | 21b | |
| SP1: | |   | |   | |
| SP2: | |   | |   | |
| SP3: | |   | |   | |
| SP4: | |   | |   | |
| SP5: | |   | |   |
About this scheme
ECgene alternative splicing isoforms for APBB2
2 Ensembl transcripts including schematic representations: ENST00000316212
ENST00000295974
|
Expression for APBB2
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| APBB2 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for APBB2
1 / 2 / 3 16 probe-sets matching APBB2 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TCTACAGCTG
SOURCE GeneReport for Unigene cluster: Hs.479602
Expression variation in blood from EXPOLDB for APBB2 |
Orthologs for APBB2
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for APBB2 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for APBB2
ENSEMBL Gene Tree for APBB2 | Paralogs for APBB2(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for APBB2 gene
- APBB32 APBB12
|
SNPs/Variants for APBB2(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for APBB2 (up to first 250kb)
|
Disorders & Mutations for APBB2
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 602710 disorders: 104300 1 Novoseek disease relationship for APBB2 gene
About this table
1 PharmGKB disease relationship for APBB2 geneAbout this table
Genetic Association Database: APBB2 Human Genome Epidemiology Navigator: APBB2 (3 documents)
|
Medical News for APBB2(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for APBB2 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/14 PubMed articles for APBB2 gene (see all 14
):- Genetic association of the APP binding protein 2 gene (APBB2) with late onset Alzheimer disease. (PubMed id 15714520)1, 3, 6 Li Y....Grupe A. (2005)
- Mapping of the human and murine X11-like genes (APBA2 and apba2), the murine Fe65 gene (Apbb1), and the human Fe65-like gene (APBB2): genes encoding phosphotyrosine-binding domain proteins that interact with the Alzheimer's disease amyloid precursor protein. (PubMed id 9585438)1, 2, 3 Blanco G....McLoughlin D.M. (1998)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Association of a novel human FE65-like protein with the cytoplasmic domain of the beta-amyloid precursor protein. (PubMed id 8855266)3, 4 Guenette S.Y.... Tanzi R.E. (1996)
- The intracellular cytoplasmic domain of the Alzheimer's disease amyloid precursor protein interacts with phosphotyrosine-binding domain proteins in the yeast two-hybrid system. (PubMed id 8955346)2, 3 McLoughlin D.M. and Miller C.C. (1996)
- Generation of the beta-amyloid peptide and the amyloid precursor protein C-terminal fragment gamma are potentiated by FE65L1. (PubMed id 14527950)1, 3 Chang Y....Guenette S.Y. (2003)
- Analysis of APBB2 gene polymorphisms in sporadic Alzheimer's disease. (PubMed id 18852029)1, 3 Golanska E....Liberski P.P. (2008)
- Zfra affects TNF-mediated cell death by interacting with death domain protein TRADD and negatively regulates the activation of NF-kappaB, JNK1, p53 and WOX1 during stress response. (PubMed id 17567906)3 Hong Q....Chang N.S. (2007)
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)3 Kimura K.... Sugano S. (2006)
- The apoptosis inhibitory domain of FE65-like protein 1 regulates both apoptotic and caspase-independent programmed cell death mediated by tumor necrosis factor. (PubMed id 16083851)3 Lange A....Adam D. (2005)
|
Search for APBB2
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing APBB2
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing APBB2
(According to HUGE)
About This Section
| -- |
Specialized Databases showing APBB2(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for APBB2(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for APBB2:

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Incremental update: 13 Oct 2009
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