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Aliases for AP4B1-AS1 Gene

Subcategory (RNA class) for AP4B1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for AP4B1-AS1 Gene

  • AP4B1 Antisense RNA 1 2 3 5
  • AP4B1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for AP4B1-AS1 Gene

Previous GeneCards Identifiers for AP4B1-AS1 Gene

  • GC01P114400

Summaries for AP4B1-AS1 Gene

GeneCards Summary for AP4B1-AS1 Gene

AP4B1-AS1 (AP4B1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for AP4B1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AP4B1-AS1 Gene

Genomics for AP4B1-AS1 Gene

Regulatory Elements for AP4B1-AS1 Gene

Enhancers for AP4B1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H113809 1.4 ENCODE dbSUPER 10.4 -1.1 -1061 4.7 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A ZNF610 NBN NR2C1 TRIM33 LOC100421402 LRIG2 PHTF1 SIKE1 OLFML3 AP4B1-AS1 AP4B1 PTPN22 MAGI3
GH01H113903 1.2 ENCODE 9.4 +92.1 92123 2.8 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 PTPN22 AP4B1-AS1 AP4B1 DCLRE1B BCL2L15
GH01H113927 1.7 FANTOM5 ENCODE dbSUPER 4.6 +119.3 119297 8.4 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF143 SP3 NFYC ZC3H11A SSRP1 TRIM33 LOC100421402 LRIG2 RSBN1 DCLRE1B OLFML3 AP4B1 SIKE1 AP4B1-AS1 HIPK1
GH01H114689 0.8 dbSUPER 9.7 +878.9 878928 3.2 ZFP64 ZNF140 CEBPG ZNF697 ZNF664 ZNF433 ZC3H11A REST ZNF501 ZBTB8A TRIM33 SIKE1 AP4B1-AS1 AMPD1 DENND2C
GH01H113869 1.2 Ensembl ENCODE 6 +60.6 60567 7.6 HDGF PKNOX1 ATF1 YBX1 ZNF766 GATA2 ZNF143 ZNF207 ATF7 RUNX3 AP4B1 PHTF1 RSBN1 DCLRE1B ENSG00000231128 HIPK1 HIPK1-AS1 PTPN22 OLFML3 AP4B1-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AP4B1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for AP4B1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000011619 -1212 3201 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A ZNF610 NBN

Genomic Locations for AP4B1-AS1 Gene

Genomic Locations for AP4B1-AS1 Gene
88,626 bases
Plus strand

Genomic View for AP4B1-AS1 Gene

Genes around AP4B1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AP4B1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AP4B1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AP4B1-AS1 Gene

Proteins for AP4B1-AS1 Gene

Post-translational modifications for AP4B1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AP4B1-AS1 Gene

Domains & Families for AP4B1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AP4B1-AS1 Gene

Function for AP4B1-AS1 Gene

Phenotypes From GWAS Catalog for AP4B1-AS1 Gene

Animal Model Products

  • Taconic Biosciences Mouse Models for AP4B1-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AP4B1-AS1 Gene

Localization for AP4B1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AP4B1-AS1 Gene

Pathways & Interactions for AP4B1-AS1 Gene

SuperPathways for AP4B1-AS1 Gene

No Data Available

Interacting Proteins for AP4B1-AS1 Gene

Gene Ontology (GO) - Biological Process for AP4B1-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for AP4B1-AS1 Gene

Drugs & Compounds for AP4B1-AS1 Gene

No Compound Related Data Available

Transcripts for AP4B1-AS1 Gene

mRNA/cDNA for AP4B1-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AP4B1-AS1 Gene

AP4B1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for AP4B1-AS1 Gene

No ASD Table

Relevant External Links for AP4B1-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for AP4B1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AP4B1-AS1 Gene

SOURCE GeneReport for Unigene cluster for AP4B1-AS1 Gene:

genes like me logo Genes that share expression patterns with AP4B1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AP4B1-AS1 Gene

Orthologs for AP4B1-AS1 Gene

Evolution for AP4B1-AS1 Gene

Gene Tree for AP4B1-AS1 (if available)
Gene Tree for AP4B1-AS1 (if available)

No data available for Orthologs for AP4B1-AS1 Gene

Paralogs for AP4B1-AS1 Gene

No data available for Paralogs for AP4B1-AS1 Gene

Variants for AP4B1-AS1 Gene

Sequence variations from dbSNP and Humsavar for AP4B1-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs587779388 Pathogenic 113,898,755(-) TTTAA(-/CA)GAGTT intron-variant, nc-transcript-variant, reference, frameshift-variant
rs879255397 Pathogenic 113,901,322(-) GTTGT(-/A)GAACT intron-variant, nc-transcript-variant, downstream-variant-500B, reference, frameshift-variant, utr-variant-5-prime
rs114201291 Likely benign 113,896,403(+) AACAC(A/G)TAAGG intron-variant, nc-transcript-variant, reference, synonymous-codon
rs114734921 Likely benign 113,895,826(+) AGAGA(C/T)AGTTG intron-variant, nc-transcript-variant, reference, missense
rs1217401 Likely benign 113,896,329(+) GCAGC(A/G)AAGCA intron-variant, nc-transcript-variant, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for AP4B1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv951398 CNV duplication 24416366
nsv473902 CNV novel sequence insertion 20440878
esv3587251 CNV loss 21293372
esv3587240 CNV loss 21293372
esv3587239 CNV loss 21293372
esv23869 CNV loss 19812545

Relevant External Links for AP4B1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AP4B1-AS1 Gene

Disorders for AP4B1-AS1 Gene

Relevant External Links for AP4B1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for AP4B1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AP4B1-AS1 Gene

Publications for AP4B1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for AP4B1-AS1 Gene

Sources for AP4B1-AS1 Gene

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