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Aliases for AP4B1-AS1 Gene

Subcategory (RNA class) for AP4B1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for AP4B1-AS1 Gene

  • AP4B1 Antisense RNA 1 2 3 5
  • AP4B1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for AP4B1-AS1 Gene

Previous GeneCards Identifiers for AP4B1-AS1 Gene

  • GC01P114400

Summaries for AP4B1-AS1 Gene

GeneCards Summary for AP4B1-AS1 Gene

AP4B1-AS1 (AP4B1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AP4B1-AS1 Gene

Genomics for AP4B1-AS1 Gene

Regulatory Elements for AP4B1-AS1 Gene

Enhancers for AP4B1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around AP4B1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for AP4B1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for AP4B1-AS1 Gene

Chromosome:
1
Start:
113,812,612 bp from pter
End:
113,901,237 bp from pter
Size:
88,626 bases
Orientation:
Plus strand

Genomic View for AP4B1-AS1 Gene

Genes around AP4B1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AP4B1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AP4B1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AP4B1-AS1 Gene

Proteins for AP4B1-AS1 Gene

Post-translational modifications for AP4B1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AP4B1-AS1 Gene

Domains & Families for AP4B1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AP4B1-AS1 Gene

Function for AP4B1-AS1 Gene

Animal Model Products

  • Taconic Biosciences Mouse Models for AP4B1-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AP4B1-AS1 Gene

Localization for AP4B1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AP4B1-AS1 Gene

Pathways & Interactions for AP4B1-AS1 Gene

SuperPathways for AP4B1-AS1 Gene

No Data Available

Interacting Proteins for AP4B1-AS1 Gene

Gene Ontology (GO) - Biological Process for AP4B1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AP4B1-AS1 Gene

Drugs & Compounds for AP4B1-AS1 Gene

No Compound Related Data Available

Transcripts for AP4B1-AS1 Gene

mRNA/cDNA for AP4B1-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AP4B1-AS1 Gene

AP4B1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for AP4B1-AS1 Gene

No ASD Table

Relevant External Links for AP4B1-AS1 Gene

GeneLoc Exon Structure for
AP4B1-AS1
ECgene alternative splicing isoforms for
AP4B1-AS1

Expression for AP4B1-AS1 Gene

mRNA expression in normal human tissues for AP4B1-AS1 Gene

SOURCE GeneReport for Unigene cluster for AP4B1-AS1 Gene:

Hs.664669
genes like me logo Genes that share expression patterns with AP4B1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for AP4B1-AS1 Gene

Orthologs for AP4B1-AS1 Gene

Evolution for AP4B1-AS1 Gene

ENSEMBL:
Gene Tree for AP4B1-AS1 (if available)
TreeFam:
Gene Tree for AP4B1-AS1 (if available)

No data available for Orthologs for AP4B1-AS1 Gene

Paralogs for AP4B1-AS1 Gene

No data available for Paralogs for AP4B1-AS1 Gene

Variants for AP4B1-AS1 Gene

Sequence variations from dbSNP and Humsavar for AP4B1-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1217385 -- 113,875,583(-) CAGAG(G/T)TAGGG intron-variant
rs1217391 -- 113,891,554(-) AAAAA(A/G)GCGTA intron-variant
rs1217392 -- 113,891,348(+) TGTAT(G/T)CCTCT intron-variant
rs1217393 -- 113,891,324(+) CAAAA(A/G)CAACA intron-variant
rs1217394 -- 113,891,037(+) CATAC(A/G)TAACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for AP4B1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv23869 CNV loss 19812545
esv3587239 CNV loss 21293372
esv3587240 CNV loss 21293372
esv3587251 CNV loss 21293372
nsv473902 CNV novel sequence insertion 20440878
nsv951398 CNV duplication 24416366

Relevant External Links for AP4B1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AP4B1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AP4B1-AS1 Gene

Disorders for AP4B1-AS1 Gene

Relevant External Links for AP4B1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AP4B1-AS1

No disorders were found for AP4B1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AP4B1-AS1 Gene

Publications for AP4B1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 65
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 65

Products for AP4B1-AS1 Gene

Sources for AP4B1-AS1 Gene

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