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Aliases & Descriptions for AP2M1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases AP50 1 , 2 Adaptin-mu2 3 CLAPM1 2 , 3 , 5 KIAA0109 3 mu2 1 , 2
Descriptions AP-2 mu 2 chain 2 AP-2 mu-2 chain 3 Clathrin assembly protein complex 2 medium chain 2 , 3 Clathrin coat assembly protein AP50 3 Clathrin coat-associated protein AP50 3 HA2 50 kDa subunit 2 , 3 Plasma membrane adaptor AP-2 50 kDa protein 3 adaptor-related protein complex 2, mu 1 subunit 2 clathrin adaptor complex AP2, mu subunit 2 clathrin coat adaptor protein AP50 2 clathrin-associated/assembly/adaptor protein, medium 1 2 plasma membrane adaptor AP-2 50kDA protein 2
Search outside databases for aliases for AP2M1 genePrevious GC identifers: GC03M180722 GC03P184887 GC03P185294 GC03P185213
Summaries for AP2M1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for AP2M1 : This gene encodes a subunit of the heterotetrameric coat assembly protein complex 2 (AP2), whichbelongs to the adaptor complexes medium subunits family. The encoded protein is required for theactivity of a vacuolar ATPase, which is responsible for proton pumping occurring in theacidification of endosomes and lysosomes. The encoded protein may also play an important role inregulating the intracellular trafficking and function of CTLA-4 protein. Two transcript variantsencoding different isoforms have been found for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: AP2M1_HUMAN, Q96CW1 Function : Component of the adaptor complexes which link clathrin to receptors in coated vesicles.Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails ofmembrane proteins, leading to their selection and concentration. AP50 is a subunit of the plasmamembrane adaptor. The complex binds polyphosphoinositide-containing lipids
Gene Wiki entry for AP2M1
Genomic Location for AP2M1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the AP2M1 gene Entrez Gene cytogenetic band: 3q28 Ensembl cytogenetic band: 3q27.1 HGNC cytogenetic band: 3q28 AP2M1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure
GeneLoc location for GC03P185375:
(about GC identifiers )
Start:
185,375,328 bp from pter
End:
185,384,573 bp from pter
Size:
9,246 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000003.10 NT_005612.15 Proteins for AP2M1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: AP2M1_HUMAN, Q96CW1 (See
protein sequence )Recommended Name: AP-2 complex subunit mu-1 Size : 435 amino acids; 49655 Da
Subunit : Adaptor protein complex 2 (AP-2) is an heterotetramer composed of two large adaptins(alpha-type subunit AP2A1 or AP2A2 and beta-type subunit AP2B1), a medium adaptin (mu-type subunitAP2M1) and a small adaptin (sigma-type subunit AP2S1). Interacts with ATP6V1H and MEGF10
Subcellular location : Cell membrane. Membrane, coated pit; Peripheral membrane protein; Cytoplasmicside. Note=Component of the coat surrounding the cytoplasmic face of coated vesicles in the plasmamembrane
PDB structures from and Proteopedia : 1H6E (3D)
 
Secondary accessions : A6NE12 P20172 P53679Alternative splicing : 2 isoforms : Q96CW1-1 Q96CW1-2
Post-translational modifications:
Phosphorylated (By similarity)1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001020376.1 NP_004059.2 ENSEMBL proteins: ENSP00000371894 ENSP00000292807 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: AP2M1 5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6
):
About this table Antibodies for AP2M1: Assays for AP2M1:
Protein
Domains/ Families for AP2M1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q96CW1 ProtoNet protein and cluster: Q96CW1
1 Blocks protein family : IPB001392 Clathrin adaptor complex UniProtKB/Swiss-Prot: AP2M1_HUMAN, Q96CW1 Similarity : Belongs to the adaptor complexes medium subunit familySimilarity : Contains 1 MHD (mu homology) domain
Gene Function for AP2M1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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Sigma-Aldrich , RNAi from
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Clones , and
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): BC014030 Applied Biosystems Silencer ® siRNAs for AP2M1 Sigma-Aldrich siRNA for AP2M1 Sigma-Aldrich shRNA for AP2M1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001025205                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001025205                                  untagged cDNA clones in CMV expression vector (see all 4 ): BC013796  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004068 UniProtKB/Swiss-Prot: AP2M1_HUMAN, Q96CW1 Function : Component of the adaptor complexes which link clathrin to receptors in coated vesicles.Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails ofmembrane proteins, leading to their selection and concentration. AP50 is a subunit of the plasmamembrane adaptor. The complex binds polyphosphoinositide-containing lipids
2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Ap2m1) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for AP2M1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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4 Sigma-Aldrich "Your Favorite Gene" Pathways for AP2M1 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for AP2M1 5/49 Interacting proteins for AP2M1 (Q96CW1 1 , 2 ENSP00000292807 3 ) via UniProtKB, MINT, and/or STRING (see all 49
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for AP2M1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for AP2M1 1 Novoseek chemical compound relationship for AP2M1 gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
tyrosine
27.55
2
10842319 (1), 17643423 (1)
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Transcripts for AP2M1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): BC014030 Sigma-Aldrich siRNA for AP2M1 Sigma-Aldrich shRNA for AP2M1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001025205 NM_004068
REFSEQ mRNAs for AP2M1 gene (2 alternative transcripts): NM_001025205.1 NM_004068.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001025205 NM_004068
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001025205                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001025205                                  untagged cDNA clones in CMV expression vector (see all 4 ): BC013796  
Additional cDNA sequence: AK057883.1 AK294159.1 AK295999.1 AK297578.1 AK297849.1 AK300228.1 AK304510.1 AK310409.1 BC004996.1 BC013796.1 BC014030.1 BT007308.1 CR590191.1 CR590275.1 CR591964.1 CR592124.1 CR595581.1 CR597007.1 CR597271.1 CR599939.1 CR602053.1 CR603080.1 CR604155.1 CR605056.1 CR605468.1 CR606363.1 CR608244.1 CR609312.1 CR610909.1 CR615014.1 CR615224.1 CR619838.1 CR620955.1 CR621554.1 D63475.1 U36188.1
24/55 DOTS entries (see all 55
): DT.91981465 DT.87000893 DT.91719552 DT.87004295 DT.100888346 DT.95209159 DT.95218842 DT.100888361 DT.120889651 DT.100753385 DT.100888378 DT.101973932 DT.91719730 DT.120889625 DT.95093378 DT.102836769 DT.220452 DT.100888357 DT.100888352 DT.100888354 DT.120889633 DT.101985620 DT.100888343 DT.100888353
24/1726 AceView cDNA sequences (see all 1726
):BQ940289 BP362158 CN484035 BE543109 CA420943 BQ229986 AI690603 AA071323 BU179450 BM564029 BQ673932 BU944832 BF433802 BE621093 BE876563 AI081123 BM695184 CA437448 CR605468 CR590191 CA416222 BM449813 BP349087 AA341231
highest scoring ESTs for AP2M1 :D63475 AA029277 AA037083 AA057713 AA065039 AA070621 AA102613 AA181563 AA195604 AA292020
Unigene Cluster for AP2M1: Adaptor-related protein complex 2, mu 1 subunit Hs.518460 [show with all ESTs ] Unigene Representative Sequence: NM_004068 GeneLoc Exon Structure 5/13 Alternative Splicing Database (ASD) splice patterns (SP) for AP2M1 (see all 13
) ExUns: 1a · 1b · 1c · 1d · 1e · 1f ^ 2a · 2b · 2c · 2d ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b · 5c · 5d · 5e ^ 6 ^ 7a · 7b ^ 8a · 8b · 8c ^ 9a · SP1 :             -         -     -   -         -   -   -             -   SP2 :             -   -       -     -   -         -   -   -               SP3 :             -         -     -   -   -       -   -   -               SP4 :             -         -     -   -   -   -   -   -   -   -       -   -   -   -   SP5 :                     -     -   -         -   -                
ExUns: 9b · 9c ^ 10 ^ 11a · 11b ^ 12a · 12b ^ 13a · 13b ^ 14 SP1 : -         -     -     -     SP2 :                     SP3 :                     SP4 : -   -                   SP5 :                    
About this scheme ECgene alternative splicing isoforms for AP2M1 2 Ensembl transcripts including schematic representations : ENST00000382456
ENST00000292807
Expression for AP2M1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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AP2M1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for AP2M1 1 / 2 / 3
3 probe-sets matching AP2M1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: ATGTCATCAASOURCE GeneReport for Unigene cluster: Hs.518460 Expression variation in blood from EXPOLDB for AP2M1
Orthologs for AP2M1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for AP2M1 gene from 5/23 species (see all 23
)
About this table Species with no ortholog for AP2M1 ENSEMBL Gene Tree for AP2M1 Paralogs for AP2M1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for AP2M1 gene AP3M1 2 AP4M1 2 AP3M2 2
SNPs/Variants for AP2M1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for AP2M1 (up to first 250kb)
Disorders & Mutations for AP2M1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 601024
Medical News for AP2M1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for AP2M1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/65 PubMed articles for AP2M1 gene (see all 65
): Chromosome localization of human genes for clathrin adaptor polypeptides AP2 beta and AP50 and the clathrin-binding protein, VCP. (PubMed id 8595912) 1, 2, 3 Druck T....Keen J.H. (1995) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Subunit H of the V-ATPase binds to the medium chain of adaptor protein complex 2 and connects Nef to the endocytic machinery. (PubMed id 12032142) 3, 4 Geyer M....Peterlin B.M. (2002) Study of the interaction of the medium chain mu 2 subunit of the clathrin-associated adapter protein complex 2 with cytotoxic T- lymphocyte antigen 4 and CD28. (PubMed id 11583591) 3, 4 Follows E.R.... Abbott W.M. (2001) Prediction of the coding sequences of unidentified human genes. III. The coding sequences of 40 new genes (KIAA0081-KIAA0120) deduced by analysis of cDNA clones from human cell line KG-1. (PubMed id 7788527) 3, 4 Nagase T....Kotani H. (1995) Activity and in vitro reassembly of the coated vesicle (H+)-ATPase requires the 50-kDa subunit of the clathrin assembly complex AP-2. (PubMed id 7989329) 1, 3 Liu Q....Forgac M. (1994) Interaction of CTLA-4 with AP50, a clathrin-coated pit adaptor protein. (PubMed id 9256472) 1, 3 Zhang Y. and Allison J.P. (1997) MEGF10 is a mammalian ortholog of CED-1 that interacts with clathrin assembly protein complex 2 medium chain and induces large vacuole formation. (PubMed id 17643423) 1, 4 Suzuki E. and Nakayama M. (2007) Identification of two new mu-adaptin-related proteins, mu-ARP1 and mu-ARP2. (PubMed id 9013859) 1, 3 Wang X. and Kilimann M.W. (1997) Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. (PubMed id 18691976) 4 Daub H.... Mann M. (2008)
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Genome Databases showing AP2M1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing AP2M1
(According to HUGE )
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Specialized Databases showing AP2M1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for AP2M1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for AP2M1:
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Expression for AP2M1
Function for AP2M1
Location for AP2M1
Medical News for AP2M1
Orthologs for AP2M1
Paralogs for AP2M1
Pathways/Interactions for AP2M1
Proteins for AP2M1
Publications for AP2M1
SNPs for AP2M1
Search Box for AP2M1
Services for AP2M1
Summaries for AP2M1
Technologies for AP2M1
Transcripts for AP2M1
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009