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Aliases & Descriptions for AP2B1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ADTB2 2 , 3 , 5 AP105B 2 , 3 AP2-BETA 2 Beta-adaptin 3 Beta2-adaptin 3 CLAPB1 2 , 3 , 5 DKFZp781K0743 2
Descriptions Adapter-related protein complex 2 beta-1 subunit 3 Clathrin assembly protein complex 2 beta large chain 2 , 3 Plasma membrane adaptor HA2/AP2 adaptin beta subunit 2 , 3 adaptin, beta 2 (beta) 2 adaptor-related protein complex 2, beta 1 subunit 2 clathrin-associated/assembly/adaptor protein, large, beta 1 2
Search outside databases for aliases for AP2B1 genePrevious GC identifers: GC17P033684 GC17P035950 GC17P033762 GC17P034059
Summaries for AP2B1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for AP2B1 : The protein encoded by this gene is one of two large chain components of the assembly proteincomplex 2, which serves to link clathrin to receptors in coated vesicles. The encoded protein isfound on the cytoplasmic face of coated vesicles in the plasma membrane. Two transcript variantsencoding different isoforms have been found for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: AP2B1_HUMAN, P63010 Function : Component of the adaptor complexes which link clathrin to receptors in coated vesicles.Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails ofmembrane proteins, leading to their selection and concentration. AP2B1 is a subunit of the plasmamembrane adaptor. The complex binds polyphosphoinositides
Gene Wiki entry for AP2B1
Genomic Location for AP2B1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the AP2B1 gene Entrez Gene cytogenetic band: 17q11.2-q12 Ensembl cytogenetic band: 17q12 HGNC cytogenetic band: 17q11.2-q12 AP2B1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17P030938:
(about GC identifiers )
Start:
30,938,395 bp from pter
End:
31,077,549 bp from pter
Size:
139,155 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000017.9 NT_010799.14 Proteins for AP2B1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: AP2B1_HUMAN, P63010 (See
protein sequence )Recommended Name: AP-2 complex subunit beta-1 Size : 937 amino acids; 104553 Da
Subunit : Adaptor protein complex 2 (AP-2) is an heterotetramer composed of two large adaptins(alpha-type subunit AP2A1 or AP2A2 and beta-type subunit AP2B1), a medium adaptin (mu-type subunitAP2M1) and a small adaptin (sigma-type subunit AP2S1). Binds EPN1, EPS15, SNAP91 and clathrin
Subcellular location : Cell membrane. Membrane, coated pit; Peripheral membrane protein; Cytoplasmicside. Note=Component of the coat surrounding the cytoplasmic face of coated vesicles in the plasmamembrane
PDB structures from and Proteopedia : 1E42 (3D)
 2G30 (3D)
 2IV8 (3D)
 2IV9 (3D)
 2JKR (3D)
 2JKT (3D)
 2VGL (3D)
 
Secondary accessions : A6NJP3 P21851 Q96J19Alternative splicing : 2 isoforms : P63010-1 P63010-2
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001025177.1 NP_001273.1 ENSEMBL proteins: ENSP00000314414 ENSP00000262325 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for AP2B1: Assays for AP2B1:
Protein
Domains/ Families for AP2B1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P63010 ProtoNet protein and cluster: P63010
5 Blocks protein families : IPB000225 Armadillo repeat IPB000357 HEAT repeat IPB002553 Adaptin IPB003016 2-oxo acid dehydrogenase IPB008152 Alpha/gamma adaptin UniProtKB/Swiss-Prot: AP2B1_HUMAN, P63010 Similarity : Belongs to the adaptor complexes large subunit family
Gene Function for AP2B1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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Sigma-Aldrich , RNAi from
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RNAi Products ,
Clones , and
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001030006 Applied Biosystems Silencer ® siRNAs for AP2B1 Sigma-Aldrich siRNA for AP2B1 Sigma-Aldrich shRNA for AP2B1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001030006                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001030006                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001030006  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001030006 UniProtKB/Swiss-Prot: AP2B1_HUMAN, P63010 Function : Component of the adaptor complexes which link clathrin to receptors in coated vesicles.Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails ofmembrane proteins, leading to their selection and concentration. AP2B1 is a subunit of the plasmamembrane adaptor. The complex binds polyphosphoinositides
1 MGI phenotypic allele for Ap2b1 (no phenotypes)2 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for AP2B1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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4 Sigma-Aldrich "Your Favorite Gene" Pathways for AP2B1 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for AP2B1 5/43 Interacting proteins for AP2B1 (ENSP00000314414 3 P63010 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 43
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006886 intracellular protein transport
IEA -- GO:0016192 vesicle-mediated transport
IEA -- GO:0050690 regulation of defense response to virus by virus
EXP 16103193
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Drugs & Compounds for AP2B1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for AP2B1 2 Novoseek chemical compound relationships for AP2B1 gene
About this table 2 PharmGKB drug compound relationships for AP2B1 gene About this table
Transcripts for AP2B1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001030006 Sigma-Aldrich siRNA for AP2B1 Sigma-Aldrich shRNA for AP2B1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001030006 NM_001282
REFSEQ mRNAs for AP2B1 gene (2 alternative transcripts): NM_001030006.1 NM_001282.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001030006 NM_001282
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001030006                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001030006                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001030006  
Additional cDNA sequence: AK289528.1 AK292531.1 AK295667.1 AK301522.1 AK304126.1 AY341427.1 BC006201.2 BC012150.1 CR599737.1 CR602901.1 CR749392.1 M34175.1
24/43 DOTS entries (see all 43
): DT.119651 DT.100725197 DT.97855409 DT.101985530 DT.100676037 DT.100676026 DT.100676035 DT.92457625 DT.91795398 DT.91902994 DT.92457619 DT.100676033 DT.120915309 DT.120915277 DT.120915349 DT.92375650 DT.100676022 DT.87016544 DT.101982283 DT.120915348 DT.75141998 DT.95171592 DT.95251367 DT.97855408
24/680 AceView cDNA sequences (see all 680
):NM_001282 BG913041 BU167910 AL043636 AW664002 F02072 BQ221243 AU280302 AL042042 AL538413 AU150896 M34175 BM917222 BM470787 N26565 BM699670 AI753056 BE646084 AW274728 BM473368 BU625217 BP364593 BM794788 AL708198
highest scoring ESTs for AP2B1 :M34175 AA009539 AA009805 AA062800 AA194716 AA214218 AA229079 AA234948 AA234949 AA236653
Unigene Cluster for AP2B1: Adaptor-related protein complex 2, beta 1 subunit Hs.514819 [show with all ESTs ] Unigene Representative Sequence: NM_001030006 GeneLoc Exon Structure 5/9 Alternative Splicing Database (ASD) splice patterns (SP) for AP2B1 (see all 9
) ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b ^ 15 ^ 16a · 16b · SP1 :         -   -       -         -                             SP2 :         -   -       -   -       -                             SP3 :                 -   -       -                             SP4 :         -   -                                           SP5 :           -       -   -       -                            
ExUns: 16c ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ 23 ^ 24 ^ 25 ^ 26 ^ 27a · 27b · 27c SP1 :   -     -   -                     SP2 :   -     -                       SP3 :   -     -   -                     SP4 :                             SP5 :                            
About this scheme ECgene alternative splicing isoforms for AP2B1 2 Ensembl transcripts including schematic representations : ENST00000312678
ENST00000262325
Expression for AP2B1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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AP2B1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for AP2B1 1 / 2 / 3
7 probe-sets matching AP2B1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AACTCTTCACSOURCE GeneReport for Unigene cluster: Hs.514819 Expression variation in blood from EXPOLDB for AP2B1
Orthologs for AP2B1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for AP2B1 gene from 5/12 species (see all 12
)
About this table Species with no ortholog for AP2B1 ENSEMBL Gene Tree for AP2B1 Paralogs for AP2B1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for AP2B1 gene AP1B1 2 AP4B1 2
SNPs/Variants for AP2B1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for AP2B1 (up to first 250kb)
Disorders & Mutations for AP2B1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
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and/or TGDB .)
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OMIM: 601025 3 Novoseek disease relationships for AP2B1 gene
About this table 1 PharmGKB disease relationship for AP2B1 gene About this table
Medical News for AP2B1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for AP2B1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/68 PubMed articles for AP2B1 gene (see all 68
): Conservation and diversity in families of coated vesicle adaptins. (PubMed id 1969413) 1, 3, 4 Ponnambalam S.... Parham P. (1990) The structure and function of the beta 2-adaptin appendage domain. (PubMed id 10944104) 1, 3, 4 Owen D.J.... Evans P.R. (2000) Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. (PubMed id 15592455) 3, 4 Rush J.... Comb M.J. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Molecular architecture and functional model of the endocytic AP2 complex. (PubMed id 12086608) 3, 4 Collins B.M.... Owen D.J. (2002) Chromosome localization of human genes for clathrin adaptor polypeptides AP2 beta and AP50 and the clathrin-binding protein, VCP. (PubMed id 8595912) 2, 3 Druck T....Keen J.H. (1995) The beta 1 and beta 2 subunits of the AP complexes are the clathrin coat assembly components. (PubMed id 8262066) 2, 3 Gallusser A. and Kirchhausen T. (1993) ATM binds to beta-adaptin in cytoplasmic vesicles. (PubMed id 9707615) 1, 3 Lim D.-S.... Kastan M.B. (1998) The beta2-adaptin clathrin adaptor interacts with the mitotic checkpoint kinase BubR1. (PubMed id 12419313) 1, 3 Cayrol C....Wright M. (2002) beta-Arrestin/AP-2 interaction in G protein-coupled receptor internalization: identification of a beta-arrestin binging site in beta 2-adaptin. (PubMed id 11777907) 1, 3 Laporte S.A....Caron M.G. (2002)
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Genome Databases showing AP2B1
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miRBase ,
ECgene ,
and/or
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Other Databases showing AP2B1
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Specialized Databases showing AP2B1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for AP2B1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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