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Aliases for AOC4P Gene

Aliases for AOC4P Gene

  • Amine Oxidase, Copper Containing 4, Pseudogene 2 3 5
  • Ubiquitin-Like Plant Homeodomain (PHD) And Really Interesting New Gene (RING) Finger Domain-Containing Protein 1 (UHRF1) Protein Associated Transcript 2 3
  • Amine Oxidase, Copper Containing 3 (Vascular Adhesion Protein 1) Pseudogene 3
  • Amine Oxidase Pseudogene 3
  • AOC4 3
  • UPAT 3

External Ids for AOC4P Gene

Previous GeneCards Identifiers for AOC4P Gene

  • GC17P041017

Summaries for AOC4P Gene

GeneCards Summary for AOC4P Gene

AOC4P (Amine Oxidase, Copper Containing 4, Pseudogene) is a Pseudogene.

Additional gene information for AOC4P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AOC4P Gene

Genomics for AOC4P Gene

Regulatory Elements for AOC4P Gene

Enhancers for AOC4P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H042850 1.4 Ensembl ENCODE dbSUPER 11.7 -13.2 -13163 4 ELF3 ARID4B DMAP1 THRB RARA SCRT2 SP5 ZHX2 MIER2 PPARG AOC4P MEOX1 AOC3
GH17H042846 1.1 Ensembl ENCODE dbSUPER 9 -19.2 -19180 1 POLR2A CEBPA BHLHE40 ZNF600 SMAD4 NR3C1 ZIC2 SUPT5H AOC4P AOC2 AOC3
GH17H042891 1.3 Ensembl ENCODE 7 +27.7 27720 4 FOXA2 MLX ZFP64 ARID4B DMAP1 YY1 ZNF121 SLC30A9 FOS SP5 AOC4P BECN1 DHX58 RNU6-287P LINC00671
GH17H042778 1.1 ENCODE 8 -85.6 -85603 3 HDGF FOXA2 MLX ARNT ZFP64 ARID4B DMAP1 SLC30A9 PAF1 SP5 HMGN2P15 EZH1 AOC4P WNK4 PIR58321 GC17P043457
GH17H042772 1.2 ENCODE 6.9 -91.5 -91508 3 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 HMGN2P15 DHX8 HMGN1P29 ENSG00000267758 CAVIN1 LINC00910 NKIRAS2 CNTNAP1 MEOX1 RAMP2-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AOC4P on UCSC Golden Path with GeneCards custom track

Genomic Location for AOC4P Gene

Chromosome:
17
Start:
42,865,922 bp from pter
End:
42,874,369 bp from pter
Size:
8,448 bases
Orientation:
Plus strand

Genomic View for AOC4P Gene

Genes around AOC4P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AOC4P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AOC4P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AOC4P Gene

Proteins for AOC4P Gene

Post-translational modifications for AOC4P Gene

No Post-translational modifications

No data available for DME Specific Peptides for AOC4P Gene

Domains & Families for AOC4P Gene

Gene Families for AOC4P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with AOC4P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AOC4P Gene

Function for AOC4P Gene

Phenotypes From GWAS Catalog for AOC4P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AOC4P Gene

Localization for AOC4P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AOC4P Gene

Pathways & Interactions for AOC4P Gene

SuperPathways for AOC4P Gene

No Data Available

Interacting Proteins for AOC4P Gene

Gene Ontology (GO) - Biological Process for AOC4P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AOC4P Gene

Drugs & Compounds for AOC4P Gene

No Compound Related Data Available

Transcripts for AOC4P Gene

Alternative Splicing Database (ASD) splice patterns (SP) for AOC4P Gene

No ASD Table

Relevant External Links for AOC4P Gene

GeneLoc Exon Structure for
AOC4P
ECgene alternative splicing isoforms for
AOC4P

Expression for AOC4P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AOC4P Gene

mRNA differential expression in normal tissues according to GTEx for AOC4P Gene

This gene is overexpressed in Liver (x8.1), Artery - Tibial (x7.6), and Adipose - Subcutaneous (x5.1).

NURSA nuclear receptor signaling pathways regulating expression of AOC4P Gene:

AOC4P
genes like me logo Genes that share expression patterns with AOC4P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AOC4P Gene

Orthologs for AOC4P Gene

Evolution for AOC4P Gene

ENSEMBL:
Gene Tree for AOC4P (if available)
TreeFam:
Gene Tree for AOC4P (if available)

No data available for Orthologs for AOC4P Gene

Paralogs for AOC4P Gene

No data available for Paralogs for AOC4P Gene

Variants for AOC4P Gene

Sequence variations from dbSNP and Humsavar for AOC4P Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000892915 -- 42,867,615(+) ACTTG(A/G)ACAGG nc-transcript-variant
rs1003821926 -- 42,865,387(+) ATAAA(A/G)TAAAG upstream-variant-2KB
rs1006167411 -- 42,866,257(+) CAGGA(C/G)CTGGC upstream-variant-2KB
rs1006775235 -- 42,868,754(+) ACCGG(C/T)TACAT nc-transcript-variant
rs1007154981 -- 42,869,097(+) TGGGC(A/G)TGGGT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for AOC4P Gene

Variant ID Type Subtype PubMed ID
esv33998 OTHER inversion 15654335
nsv1146669 OTHER inversion 26484159
nsv483009 CNV gain 15286789

Relevant External Links for AOC4P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AOC4P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AOC4P Gene

Disorders for AOC4P Gene

Relevant External Links for AOC4P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AOC4P

No disorders were found for AOC4P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AOC4P Gene

Publications for AOC4P Gene

  1. Long non-coding RNA AOC4P suppresses hepatocellular carcinoma metastasis by enhancing vimentin degradation and inhibiting epithelial-mesenchymal transition. (PMID: 26160837) Wang TH … Chen TC (Oncotarget 2015) 2 3 60
  2. Structural organization of mammalian copper-containing amine oxidase genes. (PMID: 20013028) Schwelberger HG (Inflammation research : official journal of the European Histamine Research Society ... [et al.] 2010) 2 3 60
  3. Long noncoding RNA UPAT promotes colon tumorigenesis by inhibiting degradation of UHRF1. (PMID: 26768845) Taniue K … Akiyama T (Proceedings of the National Academy of Sciences of the United States of America 2016) 3 60
  4. The origin of mammalian plasma amine oxidases. (PMID: 17385066) Schwelberger HG (Journal of neural transmission (Vienna, Austria : 1996) 2007) 3 60
  5. Characterization of AOC2 gene encoding a copper-binding amine oxidase expressed specifically in retina. (PMID: 14585497) Zhang Q … Iwata T (Gene 2003) 3 60

Products for AOC4P Gene

Sources for AOC4P Gene

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