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Aliases for AOC4P Gene

Aliases for AOC4P Gene

  • Amine Oxidase, Copper Containing 4, Pseudogene 2 3 5
  • Ubiquitin-Like Plant Homeodomain (PHD) And Really Interesting New Gene (RING) Finger Domain-Containing Protein 1 (UHRF1) Protein Associated Transcript 2 3
  • Amine Oxidase, Copper Containing 3 (Vascular Adhesion Protein 1) Pseudogene 3
  • Amine Oxidase Pseudogene 3
  • AOC4 3
  • UPAT 3

External Ids for AOC4P Gene

Previous GeneCards Identifiers for AOC4P Gene

  • GC17P041017

Summaries for AOC4P Gene

GeneCards Summary for AOC4P Gene

AOC4P (Amine Oxidase, Copper Containing 4, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AOC4P Gene

Genomics for AOC4P Gene

Regulatory Elements for AOC4P Gene

Enhancers for AOC4P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F043322 1.5 Ensembl ENCODE 19.2 +457.2 457249 1.7 MLX ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 ZNF263 ENSG00000267340 ENSG00000267002 ASB16-AS1 HMGN1P29 DHX8 NBR2 LOC108783654 LINC00910 AOC3 ENSG00000260793
GH17F042772 1.2 ENCODE 15.9 -91.5 -91508 4.0 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 HMGN2P15 LINC00910 AOC4P CNTNAP1 MEOX1 DHX8 HMGN1P29 RAMP2-AS1 NAGLU CCR10
GH17F042405 1.7 FANTOM5 Ensembl ENCODE 10.6 -456.8 -456836 6.6 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF207 NAGLU ENSG00000267002 HSD17B1 RPL27 AOC3 ENSG00000267340 KAT2A AOC4P ENSG00000267221 STAT3
GH17F042152 1.1 ENCODE 16 -711.4 -711410 3.4 HDGF PKNOX1 CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF416 AOC4P NAGLU RPL27 AOC3 DHX58 NT5C3B FKBP10 ENSG00000267261 LOC105371781
GH17F042832 1.1 ENCODE 15.3 -32.3 -32281 3.1 HDGF PKNOX1 ARNT CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 RPL27 AOC4P MEOX1 NAGLU ENSG00000212149 AOC3 PTGES3L-AARSD1 CNTD1 COA3 LOC108783654
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AOC4P on UCSC Golden Path with GeneCards custom track

Genomic Location for AOC4P Gene

Chromosome:
17
Start:
42,865,922 bp from pter
End:
42,874,369 bp from pter
Size:
8,448 bases
Orientation:
Plus strand

Genomic View for AOC4P Gene

Genes around AOC4P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AOC4P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AOC4P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AOC4P Gene

Proteins for AOC4P Gene

Post-translational modifications for AOC4P Gene

No Post-translational modifications

No data available for DME Specific Peptides for AOC4P Gene

Domains & Families for AOC4P Gene

Gene Families for AOC4P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with AOC4P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AOC4P Gene

Function for AOC4P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AOC4P Gene

Localization for AOC4P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AOC4P Gene

Pathways & Interactions for AOC4P Gene

SuperPathways for AOC4P Gene

No Data Available

Interacting Proteins for AOC4P Gene

Gene Ontology (GO) - Biological Process for AOC4P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AOC4P Gene

Transcripts for AOC4P Gene

Alternative Splicing Database (ASD) splice patterns (SP) for AOC4P Gene

No ASD Table

Relevant External Links for AOC4P Gene

GeneLoc Exon Structure for
AOC4P
ECgene alternative splicing isoforms for
AOC4P

Expression for AOC4P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for AOC4P Gene

mRNA differential expression in normal tissues according to GTEx for AOC4P Gene

This gene is overexpressed in Liver (x8.1), Artery - Tibial (x7.6), and Adipose - Subcutaneous (x5.1).

NURSA nuclear receptor signaling pathways regulating expression of AOC4P Gene:

AOC4P
genes like me logo Genes that share expression patterns with AOC4P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for AOC4P Gene

Orthologs for AOC4P Gene

Evolution for AOC4P Gene

ENSEMBL:
Gene Tree for AOC4P (if available)
TreeFam:
Gene Tree for AOC4P (if available)

No data available for Orthologs for AOC4P Gene

Paralogs for AOC4P Gene

No data available for Paralogs for AOC4P Gene

Variants for AOC4P Gene

Sequence variations from dbSNP and Humsavar for AOC4P Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs111970858 -- 42,868,237(+) AGGCC(C/T)CCGCT nc-transcript-variant
rs111992231 -- 42,867,375(+) AATGT(A/G)AGCTG nc-transcript-variant
rs112236829 -- 42,866,649(+) AGATG(C/G)TTTGC upstream-variant-2KB
rs112249308 -- 42,869,230(+) GTCTC(-/A)AAAAA downstream-variant-500B
rs113330268 -- 42,869,123(+) CTACT(C/T)GGGAG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for AOC4P Gene

Variant ID Type Subtype PubMed ID
esv33998 OTHER inversion 15654335
nsv1146669 OTHER inversion 26484159
nsv483009 CNV gain 15286789

Relevant External Links for AOC4P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AOC4P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AOC4P Gene

Disorders for AOC4P Gene

Relevant External Links for AOC4P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AOC4P

No disorders were found for AOC4P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AOC4P Gene

Publications for AOC4P Gene

  1. Long non-coding RNA AOC4P suppresses hepatocellular carcinoma metastasis by enhancing vimentin degradation and inhibiting epithelial-mesenchymal transition. (PMID: 26160837) Wang T.H. … Chen T.C. (Oncotarget 2015) 2 3 64
  2. Structural organization of mammalian copper-containing amine oxidase genes. (PMID: 20013028) Schwelberger H.G. (Inflamm. Res. 2010) 2 3 64
  3. Long noncoding RNA UPAT promotes colon tumorigenesis by inhibiting degradation of UHRF1. (PMID: 26768845) Taniue K. … Akiyama T. (Proc. Natl. Acad. Sci. U.S.A. 2016) 3 64
  4. The origin of mammalian plasma amine oxidases. (PMID: 17385066) Schwelberger H.G. (J Neural Transm 2007) 3 64
  5. Characterization of AOC2 gene encoding a copper-binding amine oxidase expressed specifically in retina. (PMID: 14585497) Zhang Q. … Iwata T. (Gene 2003) 3 64

Products for AOC4P Gene

Sources for AOC4P Gene

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