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Aliases for AOAH-IT1 Gene

Subcategory (RNA class) for AOAH-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for AOAH-IT1 Gene

  • AOAH Intronic Transcript 1 2 3 5
  • AOAH Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for AOAH-IT1 Gene

Previous GeneCards Identifiers for AOAH-IT1 Gene

  • GC00U933779

Summaries for AOAH-IT1 Gene

GeneCards Summary for AOAH-IT1 Gene

AOAH-IT1 (AOAH Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AOAH-IT1 Gene

Genomics for AOAH-IT1 Gene

Regulatory Elements for AOAH-IT1 Gene

Enhancers for AOAH-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F036601 1 FANTOM5 Ensembl ENCODE 0.8 -1.2 -1181 0.6 JUND FOS AOAH ELMO1 EEPD1 AOAH-IT1
GH07F036656 1.4 FANTOM5 Ensembl ENCODE 0.2 -59.6 -59587 6.3 SOX13 CTCF KLF17 CEBPG FEZF1 ZNF644 TEAD3 ZFHX2 FOS EGR2 AOAH ELMO1 AOAH-IT1
GH07F036638 0.9 Ensembl ENCODE 0.3 -39.9 -39859 3.8 PKNOX1 ZBED1 CBFB YY1 CTBP1 ZFHX2 SCRT2 CREM TRIM28 AOAH-IT1 AOAH
GH07F036613 0.6 Ensembl 0.4 -13.7 -13681 0.8 PKNOX1 GFI1B IKZF1 PRDM1 TRIM28 AOAH-IT1 AOAH
GH07F036565 0.7 Ensembl ENCODE 0.3 +33.7 33702 1.5 ATF3 ZBTB33 AOAH-IT1 GC07P036509
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AOAH-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for AOAH-IT1 Gene

Chromosome:
7
Start:
36,597,834 bp from pter
End:
36,600,120 bp from pter
Size:
2,287 bases
Orientation:
Minus strand

Genomic View for AOAH-IT1 Gene

Genes around AOAH-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AOAH-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AOAH-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AOAH-IT1 Gene

Proteins for AOAH-IT1 Gene

Post-translational modifications for AOAH-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AOAH-IT1 Gene

Domains & Families for AOAH-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AOAH-IT1 Gene

Function for AOAH-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AOAH-IT1 Gene

Localization for AOAH-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AOAH-IT1 Gene

Pathways & Interactions for AOAH-IT1 Gene

SuperPathways for AOAH-IT1 Gene

No Data Available

Interacting Proteins for AOAH-IT1 Gene

Gene Ontology (GO) - Biological Process for AOAH-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AOAH-IT1 Gene

Transcripts for AOAH-IT1 Gene

mRNA/cDNA for AOAH-IT1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AOAH-IT1 Gene

AOAH intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for AOAH-IT1 Gene

No ASD Table

Relevant External Links for AOAH-IT1 Gene

GeneLoc Exon Structure for
AOAH-IT1
ECgene alternative splicing isoforms for
AOAH-IT1

Expression for AOAH-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for AOAH-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for AOAH-IT1 Gene

This gene is overexpressed in Whole Blood (x45.1).

SOURCE GeneReport for Unigene cluster for AOAH-IT1 Gene:

Hs.690994
genes like me logo Genes that share expression patterns with AOAH-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for AOAH-IT1 Gene

Orthologs for AOAH-IT1 Gene

Evolution for AOAH-IT1 Gene

ENSEMBL:
Gene Tree for AOAH-IT1 (if available)
TreeFam:
Gene Tree for AOAH-IT1 (if available)

No data available for Orthologs for AOAH-IT1 Gene

Paralogs for AOAH-IT1 Gene

No data available for Paralogs for AOAH-IT1 Gene

Variants for AOAH-IT1 Gene

Sequence variations from dbSNP and Humsavar for AOAH-IT1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs114033376 -- 36,600,936(+) AATGA(A/G)TATTT intron-variant, upstream-variant-2KB
rs114147347 -- 36,599,184(+) TGTGT(A/G)TTTCC intron-variant, upstream-variant-2KB
rs114724181 -- 36,598,941(+) AAACT(C/T)GTTTT intron-variant, upstream-variant-2KB
rs116959590 -- 36,601,483(+) CCGTC(C/T)AGAGG intron-variant, upstream-variant-2KB
rs117402243 -- 36,599,197(+) GCATC(A/G)AGAAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for AOAH-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv1032157 CNV gain 25217958
nsv464427 CNV loss 19166990
nsv606618 CNV loss 21841781
nsv830957 CNV gain 17160897
nsv830958 CNV gain 17160897

Relevant External Links for AOAH-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AOAH-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AOAH-IT1 Gene

Disorders for AOAH-IT1 Gene

Relevant External Links for AOAH-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AOAH-IT1

No disorders were found for AOAH-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AOAH-IT1 Gene

Publications for AOAH-IT1 Gene

No publications were found for AOAH-IT1 Gene.

Products for AOAH-IT1 Gene

Sources for AOAH-IT1 Gene

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