ANXA9 Gene
protein-coding GIFtS: 55
GCID: GC01P150954
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|
annexin A9
(Previous symbol: ANX31)
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Aliases
for ANXA9 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Annexin A91 2 | | Annexin-93 | | ANX311 2 3 5 | | Pemphaxin3 | | Annexin XXXI2 3 | | Annexin-313 | | Annexin 312 | | Annexin-93 | | Annexin-313 | | Pemphaxin3 |
Export aliases for ANXA9 gene to outside databasesPrevious GC identifers: GC01P148796 GC01P146701 GC01P147729 GC01P148171 GC01P147767 GC01P149221 GC01P122331 |
Summaries
for ANXA9 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for ANXA9:
The annexins are a family of calcium-dependent phospholipid-binding proteins. Members of the annexin family contain 4internal repeat domains, each of which includes a type II calcium-binding site. The calcium-binding sites are requiredfor annexins to aggregate and cooperatively bind anionic phospholipids and extracellular matrix proteins. This geneencodes a divergent member of the annexin protein family in which all four homologous type II calcium-binding sites inthe conserved tetrad core contain amino acid substitutions that ablate their function. However, structural analysissuggests that the conserved putative ion channel formed by the tetrad core is intact. (provided by RefSeq, Jul 2008)
UniProtKB/Swiss-Prot: ANXA9_HUMAN, O76027Function: Low affinity receptor for acetylcholine known to be targeted by disease-causing pemphigus vulgaris antibodiesin keratinocytes
Gene Wiki entry for ANXA9
|
Genomic Views
for ANXA9 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000001.10 NC_018912.1 NT_004487.19
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the ANXA9 gene promoter:
SRF GR USF1 SRF (504 AA) HTF GR-beta AREB6 USF-1 GR-alpha
Other transcription factors
Search SABiosciences Chromatin IP Primers for ANXA9
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ANXA9 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 1q21 Ensembl cytogenetic band: 1q21.3 HGNC cytogenetic band: 1q21.2ANXA9 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01P150954: view genomic region
(about GC identifiers)
Start:
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150,954,493 bp from pter |
End:
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150,968,114 bp from pter |
Size:
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13,622 bases |
Orientation:
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plus strand |
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Proteins
for ANXA9 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: ANXA9_HUMAN, O76027 (See
protein sequence)Recommended Name: Annexin A9 Size: 345 amino acids; 38364 Da
Subunit: Homodimer
Sequence caution: Sequence=AAH05830.2; Type=Erroneous initiation; Sequence=CAA08933.1; Type=Frameshift; Positions=7;
Secondary accessions: Q5SZF1 Q6FI55 Q9BS00 Q9HBJ6Explore the universe of human proteins at neXtProt for ANXA9: NX_O76027
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_O76027
ANXA9 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_003559.2
ENSEMBL proteins: ENSP00000357943
Human Recombinant Protein Products:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table
ANXA9 for ontologies About GeneDecksing
ANXA9 Antibody Products:
Assay Products for ANXA9: |
Protein
Domains /
Families
for ANXA9 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
ANXA9 for domains About GeneDecksing
4 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry O76027ProtoNet protein and cluster: O76027 1 Blocks protein family: IPB001464 Annexin
UniProtKB/Swiss-Prot: ANXA9_HUMAN, O76027Similarity: Belongs to the annexin familySimilarity: Contains 4 annexin repeats |
Function
for ANXA9 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: ANXA9_HUMAN, O76027Function: Low affinity receptor for acetylcholine known to be targeted by disease-causing pemphigus vulgaris antibodiesin keratinocytes Genatlas biochemistry entry for ANXA9:annexin A9,mainly expressed in undifferentiating tissues,homolog of annexin 2 and derived by duplication of annexin 1
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ANXA9 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ANXA9 (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ANXA9 |
Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6): About this table
ANXA9 for ontologies About GeneDecksing
1 GenomeRNAi human phenotype for ANXA9:
|
Pathways & Interactions
for ANXA9 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ANXA9
STRING Interaction
Network Preview (showing 2 interactants - click image to see more details)
3 Interacting proteins for ANXA9 (O760272, 3 ENSP000003579434) via UniProtKB, MINT, STRING, and/or I2DAbout this table
Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table
ANXA9 for ontologies About GeneDecksing
|
Drugs & Compounds
for ANXA9 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
ANXA9 for compounds About GeneDecksing
 Browse Tocris compounds for ANXA9
10/124 HMDB Compounds for ANXA9 (see all 124) About this table
1 Novoseek chemical compound relationship for ANXA9 gene About this table
| Compound |
-log (P-Val) |
Hits |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| acetylcholine |
31.9 |
2 |
11146336 (1), 16776715 (1) |
Search CenterWatch for drugs/clinical trials and news about ANXA9
|
Transcripts
for ANXA9 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for ANXA9 gene: NM_003568.2 Unigene Cluster for ANXA9: Annexin A9 Hs.3346 [show with all ESTs]Unigene Representative Sequence: NM_0035682 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000368947(uc001ewa.2) ENST00000474997
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ANXA9 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ANXA9 (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: ANXA9 (NM_003568) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ANXA9 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ANXA9 |
Additional cDNA sequence: AF230929.1 AJ009985.1 AK314926.1 BC005830.2 CR536481.1 3 DOTS entries: DT.313691 DT.91756436 DT.91756435 24/64 AceView cDNA sequences (see all 64): AW016464 BE293660 AV645486 CR536481 AI767481 AA806217 D11990 CB161809 BU857694 BM923776 BQ648808 BC005830 CD367406 BM924444 AJ009985 BX112382 BQ651104 BE249945 AI702495 BG470316 BG823791 AI784288 BF437803 AF230929
GeneLoc Exon Structure
3 Alternative Splicing Database (ASD) splice patterns (SP) for ANXA9 About this scheme
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | · | 5c | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11a | · | 11b | ^ | 12 | ^ | 13 | ^ | 14a | · | 14b |
|---|
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| SP1: | | | | | | | | | | | - | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP2: | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP3: | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - | | | | | |
ECgene alternative splicing isoforms for ANXA9
|
Expression
for ANXA9 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| ANXA9 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: ACATCCGAGG
About this image
See ANXA9 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for ANXA9
SOURCE GeneReport for Unigene cluster: Hs.3346
UniProtKB/Swiss-Prot: ANXA9_HUMAN, O76027Tissue specificity: Expressed in the stratified squamous skin epithelium, but not in epithelia of other types (atprotein level)
SABiosciences Custom PCR Arrays for ANXA9
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ANXA9
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat ANXA9 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ANXA9 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ANXA9 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ANXA9 |
Orthologs
for ANXA9 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of eukaryotes.
Orthologs for ANXA9 gene from 6/22 species (see all 22) About this table
ENSEMBL Gene Tree for ANXA9 (if available)
TreeFam Gene Tree for ANXA9 (if available) |
Paralogs
for ANXA9 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for ANXA9 gene
- ANXA32 ANXA62 ANXA12 ANXA52 ANXA22 ANXA72 ANXA82 ANXA112
- ANXA8L22 ANXA102 ANXA8L12 ANXA42 ANXA132
15 SIMAP similar genes for ANXA9 using alignment to 1 protein entry: ANXA9_HUMAN:DKFZp686H02120 ANXA2P2 ANXA2 ANXA4 ANXA1 ANXA11
ANXA6 ANXA13 ANXA3 ANXA8L1 ANXA8 ANXA8L2
ANXA5 ANXA7 ANXA10
ANXA9 for paralogs About GeneDecksing
|
Genomic Variants
for ANXA9 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 1 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for ANXA9 (150954493 - 150968114 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for ANXA9: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ANXA9 |
|
Disorders
/ Diseases
for ANXA9 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
ANXA9 for disorders About GeneDecksing
OMIM gene information: 603319
OMIM disorders: --
3  diseases for ANXA9: About MalaCardspemphigus vulgaris pemphigus kidney disease
Export disorders for ANXA9 gene to outside databases
|
Publications
for ANXA9 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for ANXA9 gene, integrated from 9 sources (see all 20):
(articles sorted by number of sources associating them with ANXA9) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Expression profile and structural divergence of novel human annexin 31. (PubMed id 9742942)1, 2, 3, 9 Morgan R.O. and Fernandez M.-P. (1998)
- Human annexin 31 genetic mapping and origin. (PubMed id 9931420)1, 3, 9 Morgan R.O....Fernandez M.P. (1999)
- The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)1, 2 Gregory S.G.... Bentley D.R. (2006)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Pemphigus vulgaris antibody identifies pemphaxin. A novel keratinocyte annexin-like molecule binding acetylcholine. (PubMed id 10899159)1, 2 Nguyen V.T.... Grando S.A. (2000)
- Atypical properties displayed by annexin A9, a novel member of the annexin family of Ca(2+) and lipid binding proteins. (PubMed id 12832069)1, 9 Goebeler V....Rescher U. (2003)
- Annexin A9 is a periplakin interacting partner in memb rane-targeted cytoskeletal linker protein complexes. (PubMed id 22841549)1 Boczonadi V. and Maatta A. (2012)
- Genome-wide association study identifies a new melanom a susceptibility locus at 1q21.3. (PubMed id 21983785)1 Macgregor S....Hayward N.K. (2011)
- Genome-wide association study identifies novel loci predisposing to cutaneous melanoma. (PubMed id 21926416)1 Amos C.I....Wei Q. (2011)
- Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (2011)
|
External Searches for ANXA9 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing ANXA9 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing ANXA9 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ANXA9 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for ANXA9 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for ANXA9 gene:
Search GeneIP for patents involving ANXA9
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for ANXA9 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ANXA9 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ANXA9 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ANXA9 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ANXA9 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ANXA9 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ANXA9 |
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| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ANXA9 |
|  |  |  | | | | ThermoFisher Antibodies for ANXA9 |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ANXA9 |
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