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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ANXA13 Gene

protein-coding   GIFtS: 55
GCID: GC08M124762

annexin A13


(Previous symbol: ANX13)
 Explore 5 diseases affiliated with
ANXA13 via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for ANXA13    

Aliases
for ANXA13 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
Annexin A131 2     Intestine-Specific Annexin2 3
ANX131 2 3 5     Annexin, Intestine-Specific2
ISA2 3 5     Annexin-133
Annexin XIII2 3     Annexin-133

External Ids:    HGNC: 5361   Entrez Gene: 3122   Ensembl: ENSG000001045377   OMIM: 6025735   UniProtKB: P272163   

Export aliases for ANXA13 gene to outside databases

Previous GC identifers: GC08M123834 GC08M124750 GC08M124361 GC08M124649 GC08M120019


Summaries
for ANXA13 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
Entrez Gene summary for ANXA13:
This gene encodes a member of the annexin family. Members of this calcium-dependent phospholipid-binding protein family
play a role in the regulation of cellular growth and in signal transduction pathways. The specific function of this
gene has not yet been determined; however, it is associated with the plasma membrane of undifferentiated,
proliferating endothelial cells and differentiated villus enterocytes. Alternatively spliced transcript variants
encoding different isoforms have been identified. (provided by RefSeq, Jul 2008)

Gene Wiki entry for ANXA13


Genomic Views
for ANXA13 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000008.10  NC_018919.1  NT_008046.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ANXA13 gene promoter:
         STAT5B   LHX3b/Lhx3b   p53   Nkx2-5   GATA-2   MEF-2A   LHX3a/Lhx3a   aMEF-2   Hlf   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: ANXA13 promoter sequence
   Search SABiosciences Chromatin IP Primers for ANXA13

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ANXA13


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 8q24.13   Ensembl cytogenetic band:  8q24.13   HGNC cytogenetic band: 8q24.13

ANXA13 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ANXA13 gene location

GeneLoc information about chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08M124762:  view genomic region     (about GC identifiers)

Start:
 124,693,034 bp from pter      End:
 124,749,647 bp from pter
Size:
 56,614 bases      Orientation:
 minus strand

Proteins
for ANXA13 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: ANX13_HUMAN, P27216 (See protein sequence)
Recommended Name: Annexin A13  
Size: 316 amino acids; 35415 Da
Subcellular location: Cell membrane. Note=Associated with the plasma membrane of undifferentiated, proliferating crypt
epithelial cells as well as differentiated villus enterocytes
Secondary accessions: Q9BQR5
Alternative splicing: 2 isoforms:  P27216-1   P27216-2   

Explore the universe of human proteins at neXtProt for ANXA13: NX_P27216

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P27216

    • ANXA13 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (2 alternative transcripts): 
    NP_001003954.1  NP_004297.2  

    ENSEMBL proteins: 
     ENSP00000262219   ENSP00000390809   ENSP00000429358  

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    Uscn Proteins for ANXA13

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886plasma membrane NAS1530946


    ANXA13 for ontologies           About GeneDecksing



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    Protein Domains /
    Families
    for ANXA13 gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    ANXA13 for domains           About GeneDecksing

    4 InterPro domains/families:
     IPR001464 Annexin
     IPR018252 Annexin_repeat_CS
     IPR009166 AnnexinXIII
     IPR018502 Annexin_repeat

    Graphical View of Domain Structure for InterPro Entry P27216

    ProtoNet protein and cluster: P27216

    2 Blocks protein families:
    IPB001464 Annexin
    IPB002392 Annexin type V signature


    UniProtKB/Swiss-Prot: ANX13_HUMAN, P27216
    Domain: A pair of annexin repeats may form one binding site for calcium and phospholipid
    Similarity: Belongs to the annexin family
    Similarity: Contains 4 annexin repeats


    Function
    for ANXA13 gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    Function Summary:
         Genatlas biochemistry entry for ANXA13:
    annexin A13,calcium and phospholipid binding protein

    miRNA
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    In Situ Assay
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    Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005509calcium ion binding IEA--
    GO:0005544calcium-dependent phospholipid binding NAS--


    ANXA13 for ontologies           About GeneDecksing



    Pathways & Interactions
    for ANXA13 gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ANXA13

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    5 Interacting proteins for ANXA13 (P272163 ENSP000002622194) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    NMT1P304193, ENSP000002589604I2D: score=1 STRING: ENSP00000258960
    KIFC3Q9BVG83, ENSP000003689764I2D: score=1 STRING: ENSP00000368976
    NEDD4P469343, ENSP000003455304I2D: score=1 STRING: ENSP00000345530
    ACTA1P681333I2D: score=1 
    ACTG1P632613I2D: score=1 
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0030154cell differentiation NAS1530946


    ANXA13 for ontologies           About GeneDecksing



    Drugs & Compounds
    for ANXA13 gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ANXA13

    1 HMDB Compound for ANXA13    About this table
    CompoundSynonyms CAS #PubMed Ids
    CalciumCa (see all 2)7440-70-2--
    Search CenterWatch for drugs/clinical trials and news about ANXA13 / ANX13 

    Transcripts
    for ANXA13 gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section
    REFSEQ mRNAs for ANXA13 gene (2 alternative transcripts): 
    NM_001003954.1  NM_004306.2  

    Unigene Cluster for ANXA13:

    Annexin A13
    Hs.181107  [show with all ESTs]
    Unigene Representative Sequence: NM_001003954
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000262219(uc003yqt.3) ENST00000419625(uc003yqu.3) ENST00000520519
    ENST00000523822 ENST00000520591 ENST00000519045

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    Inhib. RNA
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    Clone
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    Additional cDNA sequence: 

    AJ306450.1 AK223374.1 AK290281.1 BC125158.1 CR541838.1 Z11502.1 

    3 DOTS entries:

    DT.453956  DT.91732113  DT.120638905 

    24/27 AceView cDNA sequences (see all 27):

    NM_004306 BM824630 AI984289 NM_001003954 T28629 CR541838 AW295277 BG747425 
    AK057781 BG470198 BM792420 BG542398 BX280061 Z11502 BG248802 BG385819 
    AJ306450 BP370194 AI927400 BE293184 AI678696 BG823061 AA947645 AW296908 

    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for ANXA13    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b
    SP1:                    -     -                                                                     
    SP2:              -     -     -                                                                     
    SP3:                          -                                                                     
    SP4:                                                                                                


    ECgene alternative splicing isoforms for ANXA13

    Expression
    for ANXA13 gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ANXA13 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GTAACTGGAT

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image

    ANXA13 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    5 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    Gut TubeHindgutHindgut Endoderm CellsEndoderm
    Gut TubeMidgutMidgut Endoderm CellsEndoderm
    Gut TubeHindgutGut Tube
    Gut TubeMidgutGut Tube
    KidneyS-shaped BodyKidney
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See ANXA13 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ANXA13

    SOURCE GeneReport for Unigene cluster: Hs.181107

    UniProtKB/Swiss-Prot: ANX13_HUMAN, P27216
    Tissue specificity: Gut specific

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    Orthologs
    for ANXA13 gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    This gene was present in the common ancestor of eukaryotes.

    Orthologs for ANXA13 gene from 7/22 species (see all 22)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    chicken
    (Gallus gallus)    		 Aves ANXA131 annexin A13 71.27(n)
    72.37(a)    		   420342  NM_001199501.1  NP_001186430.1 
    lizard
    (Anolis carolinensis)    		 Reptilia ANXA136
    		 --
    		 70(a)
    		 1 ↔ 1
    		 4(6671243-6682567)
    African clawed frog
    (Xenopus laevis)    		 Amphibia Xl.251152 Xenopus laevis transcribed sequence with weak similarity more 75.58(n)    CB205973.1 
    zebrafish
    (Danio rerio)    		 Actinopterygii Dr.165042 Transcribed sequence with weak similarity to protein more 77.77(n)    CK028447.1 
    worm
    (Caenorhabditis elegans)    		 Secernentea nex-23
    nex-11    		 Annexin3
    Protein NEX-11    		 46(a)
    (best of 2)3
    49.06(n)1
    42.52(a)1    		   III(10397630-10399688)3
    1757141  NM_065708.51  NP_498109.11 
    thale cress
    (Arabidopsis thaliana)    		 eudicotyledons ANN51 annexin D5 49.05(n)
    37.04(a)    		   843137  NM_105479.1  NP_564920.1 
    rice
    (Oryza sativa)    		 Liliopsida Os09g03949001 hypothetical protein 48.32(n)
    40.27(a)    		   4346972  NM_001069631.1  NP_001063096.1 


    ENSEMBL Gene Tree for ANXA13 (if available)
    TreeFam Gene Tree for ANXA13 (if available) 

    Paralogs
    for ANXA13 gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ANXA13 gene
    ANXA32  ANXA62  ANXA12  ANXA52  ANXA92  ANXA22  ANXA72  ANXA82  
    ANXA112  ANXA8L22  ANXA102  ANXA8L12  ANXA42  
    15 SIMAP similar genes for ANXA13 using alignment to 3 protein entries:     ANX13_HUMAN (see all proteins):
    ANXA7    DKFZp686H02120    ANXA8L2    ANXA4    ANXA3    ANXA6
    ANXA2    ANXA11    ANXA1    ANXA2P2    ANXA5    ANXA8
    ANXA10    ANXA9    ANXA8L1

    ANXA13 for paralogs           About GeneDecksing



    Genomic Variants
    for ANXA13 gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1103 NCBI SNPs in ANXA13 are shown (see all 1103)     About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance    		Chr 8 posSequence#AA
    Chg    		TypeMore#Allele
    freq    		PopTotal
    sample    		More
    ----------
    rs2008307191,2
    		Cother124724923(+) CCATTC/TCTTTG 4 E G mis11Minor allele frequency- T:0.00EU 1323
    rs1844886041,2
    		--124692611(+) CAATGA/GATGAC 2 -- ds50010--------
    rs1902221241,2
    		--124692621(+) CAACTA/GTGATT 2 -- ds50010--------
    rs1394499581,2
    		--124692628(+) GATTAC/TTGGGC 2 -- ds50010--------
    rs78329601,2
    		C,F,H,--124692711(+) ACACAG/AAATCT 2 -- ds500111Minor allele frequency- A:0.03NS EA NA WA 1308
    rs1498657491,2
    		--124692730(+) GGAACA/CAATTC 2 -- ds50010--------
    rs1824462311,2
    		--124692809(+) AGAGGA/GAAGAC 2 -- ds50010--------
    rs100890311,2
    		C,F,H,--124692832(+) AATGTC/ATAGAG 2 -- ds50015Minor allele frequency- A:0.01NS EA CSA 416
    rs1866333191,2
    		--124692893(+) TACAGC/TTTACA 2 -- ds50010--------
    rs1904058331,2
    		--124692951(+) TAAAAA/GATGTA 2 -- ds50010--------

    HapMap Linkage Disequilibrium report for ANXA13 (124693034 - 124749647 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for ANXA13: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ANXA13
    DNA2.0 Custom Variant and Variant Library Synthesis for ANXA13

    Disorders / Diseases
    for ANXA13 gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    ANXA13 for disorders           About GeneDecksing

    OMIM gene information: 602573    OMIM disorders: --

    5 diseases for ANXA13:    About MalaCards
    patellofemoral pain syndrome    squamous cell papilloma    spondylosis    paine syndrome
    papilloma


    Export disorders for ANXA13 gene to outside databases

    Publications
    for ANXA13 gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ANXA13 gene, integrated from 9 sources (see all 19):
    (articles sorted by number of sources associating them with ANXA13)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. Comparative genetics and evolution of annexin A13 as the founder gene of vertebrate annexins. (PubMed id 11961095)1, 2, 9 Iglesias J.M....Fernandez M.-P. (2002)
    2. A strategy for isolation of cDNAs encoding proteins affecting human intestinal epithelial cell growth and differentiation: characterization of a novel gut-specific N-myristoylated annexin. (PubMed id 1530946)1, 2, 9 Wice B.M. and Gordon J.I. (1992)
    3. Genomic locations of ANX11 and ANX13 and the evolutionary genetics of human annexins. (PubMed id 9503022)1, 3, 9 Morgan R.O....Fernandez M.P. (1998)
    4. Apical membrane targeting of Nedd4 is mediated by an association of its C2 domain with annexin XIIIb. (PubMed id 10871286)1, 9 Plant P.J....Rotin D. (2000)
    5. A genome-wide search for loci interacting with known p rostate cancer risk-associated genetic variants. (PubMed id 22219177)1 Tao S....Sun J. (2012)
    6. Genome-wide association study of theta band event-rel ated oscillations identifies serotonin receptor gene HTR7 influencing risk of a lcohol dependence. (PubMed id 21184583)1 Zlojutro M....Almasy L. (2011)
    7. Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)
    8. Identification of annexin A13 as a regulator of chemo therapy resistance using random homozygous gene perturbation. (PubMed id 20701074)1 Reiske H....Kinch M.S. (2010)
    9. Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)1 Barbe L....Andersson-Svahn H. (2008)
    10. DNA sequence and analysis of human chromosome 8. (PubMed id 16421571)2 Nusbaum C....Lander E.S. (2006)

    External Searches for ANXA13 gene

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    Genome Databases showing ANXA13 gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 312 HGNC: 536 AceView: ANXA13 Ensembl:ENSG00000104537 euGenes: HUgn312
    ECgene: ANXA13 H-InvDB: ANXA13

    Other Databases showing ANXA13 gene

    (According to HUGE)
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    Specialized Databases showing ANXA13 gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ANXA13 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for ANXA13 Genetics and Cytogenetics in Oncology and Haematology

    Intellectual Property
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