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ANP32D Gene

protein-coding   GIFtS: 38
GCID: GC12P048866

Acidic (Leucine-Rich) Nuclear Phosphoprotein 32 Family,...

  Search for ANP32D
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Acidic (Leucine-Rich) Nuclear Phosphoprotein 32 Family, Member D1 2     Tumorigenic Protein Pp32r22 3
PP32R22 3 5     Acidic Leucine-Rich Nuclear Phosphoprotein 32 Family Member D2
Pp32 Related 21 2     Acidic Nuclear Phosphoprotein 32D2
Phosphoprotein 32-Related Protein 22 3     

External Ids:    HGNC: 166761   Entrez Gene: 235192   Ensembl: ENSG000001392237   OMIM: 6068785   UniProtKB: O956263   

Export aliases for ANP32D gene to outside databases

Previous GC identifers: GC12P048832 GC12P048765 GC12P048583 GC12P047152 GC12P045900


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for ANP32D Gene:
Phosphoprotein 32 (PP32) is a tumor suppressor that can inhibit several types of cancers, including prostate and
breast cancers. The protein encoded by this gene is one of at least two proteins that are similar in amino acid
sequence to PP32 and are part of the same acidic nuclear phosphoprotein gene family. However, unlike PP32, the
encoded protein is tumorigenic. The tumor suppressor function of PP32 has been localized to a 25 amino acid
region that is absent in the protein encoded by this gene. This gene does not contain introns. (provided by
RefSeq, Jul 2008)

GeneCards Summary for ANP32D Gene:
ANP32D (acidic (leucine-rich) nuclear phosphoprotein 32 family, member D) is a protein-coding gene. An important paralog of this gene is ANP32A.

Gene Wiki entry for ANP32D Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000012.12  NC_018923.2  NT_029419.13  
Regulatory elements:
   Regulatory transcription factor binding sites in the ANP32D gene promoter:
         NF-1   Nkx2-5   CUTL1   HNF-3beta   GATA-2   S8   Nkx6-1   Sox9   IRF-7A   ZID   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for ANP32D

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ANP32D


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12q13.11   Ensembl cytogenetic band:  12q13.11   HGNC cytogenetic band: 12q13.12

ANP32D Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ANP32D gene location

GeneLoc information about chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12P048866:  view genomic region     (about GC identifiers)

Start:
48,866,448 bp from pter      End:
48,866,843 bp from pter
Size:
396 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: AN32D_HUMAN, O95626 (See protein sequence)
Recommended Name: Acidic leucine-rich nuclear phosphoprotein 32 family member D  
Size: 131 amino acids; 14806 Da
Secondary accessions: Q6NTC4

Explore the universe of human proteins at neXtProt for ANP32D: NX_O95626

Explore proteomics data for ANP32D at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ANP32D Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_036536.2  
    ENSEMBL proteins: 
     ENSP00000266594  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ANP32: ANP32 acidic nuclear phosphoproteins

    1 InterPro protein domain:
     IPR001611 Leu-rich_rpt

    Graphical View of Domain Structure for InterPro Entry O95626

    ProtoNet protein and cluster: O95626

    UniProtKB/Swiss-Prot: AN32D_HUMAN, O95626
    Similarity: Belongs to the ANP32 family
    Similarity: Contains 5 LRR (leucine-rich) repeats


    Find genes that share domains with ANP32D           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for ANP32D
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol3
    mitochondrion1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ANP32D
    Interactions:

        GeneGlobe Interaction Network for ANP32D

    STRING Interaction Network Preview (showing 5 interactants - click image to see 21)

    Selected Interacting proteins for ANP32D (ENSP000002665944) via UniProtKB, MINT, STRING, and/or I2D (see all 21)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    PTSENSP000002803624STRING: ENSP00000280362
    TPI1ENSP000003799334STRING: ENSP00000379933
    DMAP1ENSP000003126974STRING: ENSP00000312697
    MRGBPENSP000003595184STRING: ENSP00000359518
    SRCAPENSP000002625184STRING: ENSP00000262518
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ANP32D (AN32D)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ANP32D gene: 
    NM_012404.2  

    Unigene Cluster for ANP32D:

    Acidic (leucine-rich) nuclear phosphoprotein 32 family, member D
    Hs.532658
    Unigene Representative Sequence: NM_012404
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000266594(uc010slt.2)
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      QuantiTect SYBR Green Assays in human, mouse, rat ANP32D
      Search QuantiFast Probe-based Assays in human, mouse, rat ANP32D

    Additional mRNA sequence: BC069122.1 

    1 DOTS entry:

    DT.102827873 

    2 AceView cDNA sequences:

    NM_012404 BC069122 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ANP32D expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    ANP32D Expression
    About this image

    ANP32D Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ANP32D Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.532658
        Custom PCR Arrays for ANP32D
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ANP32D

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for ANP32D gene from Selected species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves --
    Uncharacterized protein
    39(a)
    1 → many
    10(18731447-18749887)
    lizard
    (Anolis carolinensis)
    Reptilia --
    Uncharacterized protein
    42(a)
    1 → many
    GL343671.1(255827-265447)
    zebrafish
    (Danio rerio)
    Actinopterygii anp32a6
    acidic (leucine-rich) nuclear phosphoprotein 32 fa...
    42(a)
    1 → many
    7(34680134-34686042) ENSDARG00000006487
    fruit fly
    (Drosophila melanogaster)
    Insecta Mapmodulin6
    Mapmodulin
    18(a)
    1 → many
    2R(13753827-13759515)
    worm
    (Caenorhabditis elegans)
    Secernentea F33H2.36
    T19H12.26
    Protein T19H12.2 (T19H12.2) mRNA, complete cds
    21(a)
    20(a)
    many ↔ many
    many ↔ many
    I(15034517-15035467) WBGene00009367
    V(4890429-4891422) WBGene00020588
            Species with no ortholog for ANP32D

    ENSEMBL Gene Tree for ANP32D (if available)
    TreeFam Gene Tree for ANP32D (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ANP32D gene
    ANP32A2  ANP32B2  ANP32E2  
    4 SIMAP similar genes for ANP32D using alignment to 1 protein entry:     AN32D_HUMAN:
    ANP32A    ANP32C    ANP32B    ANP32E

    Find genes that share paralogs with ANP32D           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ANP32D (see all 103)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 12 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs357518111,2
    C,F--48864465(+) TGGTCC/TATTTT 1 -- us2k11Minor allele frequency- T:0.50NA 2
    rs343512641,2
    C--48864467(+) TTTTTT/-GTTTT 1 -- us2k11Minor allele frequency- -:0.50CSA 2
    rs2004242071,2
    --48864476(+) TTTTT-/GTTTTT 1 -- us2k10--------
    rs1444199301,2
    C--48864531(+) GTTGAC/TGTCAA 1 -- us2k10--------
    rs1484880131,2
    C--48864616(+) AAAATG/TTTGTG 1 -- us2k10--------
    rs1859497611,2
    --48864650(+) TATGGC/TGTACA 1 -- us2k10--------
    rs1427226371,2
    C--48864651(+) ATGGCA/GTACAT 1 -- us2k10--------
    rs1911084761,2
    --48864692(+) AATAAA/GCACAT 1 -- us2k10--------
    rs1141114481,2
    F--48864784(+) TAAATG/CTACAA 1 -- us2k11Minor allele frequency- C:0.03WA 118
    rs1132279351,2
    C--48864864(+) TTTTGT/CACCCA 1 -- us2k14Minor allele frequency- C:0.26CSA WA NA EA 360

    HapMap Linkage Disequilibrium report for ANP32D (48866448 - 48866843 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for ANP32D: --
    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing ANP32D
    DNA2.0 Custom Variant and Variant Library Synthesis for ANP32D

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 606878    OMIM disorders: --


    Find genes that share disorders with ANP32D           About GenesLikeMe


    Export disorders for ANP32D gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ANP32D gene, integrated from 10 sources (see all 11):
    (articles sorted by number of sources associating them with ANP32D)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Modulation of oncogenic potential by alternative gene use in human prostate cancer. (PubMed id 10086381)1, 2, 3, 9 Kadkol S.S.... Pasternack G.R. (Nat. Med. 1999)
    2. The Anp32 family of proteins containing leucine-rich repeats. (PubMed id 15895553)1, 2 Matilla A. and Radrizzani M. (Cerebellum 2005)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    4. Identification of sequences required for inhibition of oncogene- mediated transformation by pp32. (PubMed id 10400610)1, 3 Brody J.R.... Pasternack G.R. (J. Biol. Chem. 1999)
    5. Correction to &quot;Modulation of oncogenic potential by alternative gene use in human prostate cancer&quot; (PubMed id 10471270)1, 2 Kadkol S.S....Pasternack G.R. (Nat. Med. 1999)
    6. A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. (PubMed id 22219177)1 Tao S....Sun J. (Carcinogenesis 2012)
    7. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (amp 2011)
    8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    9. Tumor suppression and potentiation by manipulation of pp32 expression. (PubMed id 11360199)1 Bai J.... Pasternack G.R. (Oncogene 2001)
    10. Expression of pp32 gene family members in breast cancer. (PubMed id 11678310)1 Kadkol S.S....Pasternack G.R. (Breast Cancer Res. Treat. 2001)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 23519 HGNC: 16676 AceView: ANP32D Ensembl:ENSG00000139223 euGenes: HUgn23519
    ECgene: ANP32D H-InvDB: ANP32D

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ANP32D Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for ANP32D Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ANP32D gene:
    Search GeneIP for patents involving ANP32D

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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