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ANP32C Gene

pseudogene   GIFtS: 42
GCID: GC04M165118

Acidic (Leucine-Rich) Nuclear Phosphoprotein 32 Family,...

  Search for ANP32C
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Acidic (Leucine-Rich) Nuclear Phosphoprotein 32 Family, Member C1 2
PP32R12 3 5
Phosphoprotein 32-Related Protein 12 3
Tumorigenic Protein Pp32r12 3
Acidic Leucine-Rich Nuclear Phosphoprotein 32 Family Member C2
Pp32 Related 12

External Ids:    HGNC: 166751   Entrez Gene: 235202   Ensembl: ENSG000002485467   OMIM: 6068775   UniProtKB: O434233   

Export aliases for ANP32C gene to outside databases

Previous GC identifers: GC04M165967 GC04M165546 GC04M165695 GC04M165475 GC04M165337 GC04M160872


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for ANP32C Gene:
Phosphoprotein 32 (PP32) is a tumor suppressor that can inhibit several types of cancers, including prostate and
breast cancers. The protein encoded by this gene is one of at least two proteins that are similar in amino acid
sequence to PP32 and are part of the same acidic nuclear phosphoprotein gene family. However, unlike PP32, the
encoded protein is tumorigenic. The tumor suppressor function of PP32 has been localized to a 25 amino acid
region that is divergent between PP32 and the protein encoded by this gene. This gene does not contain introns.
(provided by RefSeq, Jul 2008)

GeneCards Summary for ANP32C Gene:
ANP32C (acidic (leucine-rich) nuclear phosphoprotein 32 family, member C) is a pseudogene.

Gene Wiki entry for ANP32C Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000004.11  NC_018915.2  NT_016354.20  
Regulatory elements:
   Regulatory transcription factor binding sites in the ANP32C gene promoter:
         TBP   NF-1   NF-1/L   LHX3b/Lhx3b   Pax-2   Pax-2a   Nkx2-5   HSF2   LHX3a/Lhx3a   Pax-4a   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for ANP32C

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ANP32C


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q32.3   Ensembl cytogenetic band:  4q32.3   HGNC cytogenetic band: 4q32.3

ANP32C Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ANP32C gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M165118:  view genomic region     (about GC identifiers)

Start:
165,118,159 bp from pter      End:
165,118,863 bp from pter
Size:
705 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: AN32C_HUMAN, O43423 (See protein sequence)
Recommended Name: Acidic leucine-rich nuclear phosphoprotein 32 family member C  
Size: 234 amino acids; 26762 Da
Caution: The His-140 polymorphism is uncertain. It has been found in prostatic cell line without corresponding
normal tissue sample. Cells transfected with this variant expressed at least twice as much proteins than native
cells
Secondary accessions: Q4W5F9

Explore the universe of human proteins at neXtProt for ANP32C: NX_O43423

Explore proteomics data for ANP32C at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ANP32C Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_036535.1  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ANP32: ANP32 acidic nuclear phosphoproteins

    2 InterPro protein domains:
     IPR001611 Leu-rich_rpt
     IPR025875 Leu-rich_rpt_4

    Graphical View of Domain Structure for InterPro Entry O43423

    ProtoNet protein and cluster: O43423

    UniProtKB/Swiss-Prot: AN32C_HUMAN, O43423
    Similarity: Belongs to the ANP32 family
    Similarity: Contains 4 LRR (leucine-rich) repeats


    Find genes that share domains with ANP32C           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Animal Models:
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol3
    nucleus2

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ANP32C
    Interactions:

        GeneGlobe Interaction Network for ANP32C

    3 Interacting proteins for ANP32C (O434233) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    APEX1P276953I2D: score=1 
    SH3GLB2Q9NR463I2D: score=1 
    UBA5Q9GZZ93I2D: score=1 
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ANP32C (AN32C)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ANP32C gene: 
    NM_012403.1  

    Unigene Cluster for ANP32C:

    Acidic (leucine-rich) nuclear phosphoprotein 32 family, member C
    Hs.661161  [show with all ESTs]
    Unigene Representative Sequence: BE742749
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000512835(uc011cjk.2)
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      QuantiFast Probe-based Assays in human, mouse, rat ANP32C

    2 DOTS entries:

    DT.452718  DT.92064181 

    1 AceView cDNA sequence:

    NM_012403 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ANP32C expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AGGAGGAGTA
    ANP32C Expression
    About this image

    ANP32C Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ANP32C Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.661161

    UniProtKB/Swiss-Prot: AN32C_HUMAN, O43423
    Tissue specificity: Expressed in activated stem cells, such as mobilized CD34+ cells and cord blood CD34+ cells,
    but not in resting bone marrow CD34+ cells. Expressed in a variety of neoplastic cell lines, mainly in prostatic
    adenocarcinoma cell lines. Not expressed in normal prostatic tissue

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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of human and mouse.

    Orthologs for ANP32C gene from 1 species (see representative species )    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Anp32-ps5 acidic (leucine-rich) nuclear phosphoprotein 32 family, more   --   11 (19.21 cM) 33394879 


    ENSEMBL Gene Tree for ANP32C (if available)
    TreeFam Gene Tree for ANP32C (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ANP32C gene
    4 SIMAP similar genes for ANP32C using alignment to 1 protein entry:     AN32C_HUMAN:
    ANP32D    ANP32A    ANP32E    ANP32B

    Find genes that share paralogs with ANP32C           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    5 SNPs for ANP32C    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 4 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs22886741,2,4
    ----see VAR_0267022 mis40--------
    rs22886751,2,4
    ----see VAR_0204192 mis40--------
    VAR_0267034
    ----see VAR_0267032 Y H mis40--------
    rs170087161,2,4
    ----see VAR_0483142 mis40--------
    rs22886761,2,4
    ----see VAR_0204202 mis40--------

    HapMap Linkage Disequilibrium report for ANP32C (165118159 - 165118863 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for ANP32C: --
    Site Specific Mutation Identification with PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers for resequencing ANP32C
    DNA2.0 Custom Variant and Variant Library Synthesis for ANP32C

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 606877    OMIM disorders: --


    Find genes that share disorders with ANP32C           About GenesLikeMe

    Genetic Association Database (GAD): ANP32C

    Export disorders for ANP32C gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ANP32C gene, integrated from 10 sources (see all 14):
    (articles sorted by number of sources associating them with ANP32C)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Modulation of oncogenic potential by alternative gene use in human prostate cancer. (PubMed id 10086381)1, 2, 3, 9 Kadkol S.S.... Pasternack G.R. (Nat. Med. 1999)
    2. Identification of a functional mutation in pp32r1 (ANP32C). (PubMed id 15146458)1, 2, 9 Kochevar G.J.... Pasternack G.R. (Hum. Mutat. 2004)
    3. The Anp32 family of proteins containing leucine-rich repeats. (PubMed id 15895553)1, 2 Matilla A. and Radrizzani M. (Cerebellum 2005)
    4. Identification of sequences required for inhibition of oncogene- mediated transformation by pp32. (PubMed id 10400610)1, 3 Brody J.R.... Pasternack G.R. (J. Biol. Chem. 1999)
    5. Correction to &quot;Modulation of oncogenic potential by alternative gene use in human prostate cancer&quot; (PubMed id 10471270)1, 2 Kadkol S.S....Pasternack G.R. (Nat. Med. 1999)
    6. Dysregulation of cell cycle control caused by overexpression of the oncogene pp32r1 (ANP32C) and the Tyr&gt;His mutant pp32r1Y140H. (PubMed id 23403278)1 Buddaseth S....Huyton T. (Biochim. Biophys. Acta 2013)
    7. Host cell interactome of HIV-1 Rev includes RNA helicases involved in multiple facets of virus production. (PubMed id 22174317)1 Naji S....Gerace L. (amp 2012)
    8. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PubMed id 17903294)4 Yang Q....O'Donnell C.J. (BMC Med. Genet. 2007)
    9. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PubMed id 17903301)4 Vasan R.S....Benjamin E.J. (BMC Med. Genet. 2007)
    10. Framingham Heart Study genome-wide association: results for pulmonary function measures. (PubMed id 17903307)4 Wilk J.B....O'Connor G.T. (BMC Med. Genet. 2007)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 23520 HGNC: 16675 AceView: ANP32C Ensembl:ENSG00000248546 euGenes: HUgn23520
    ECgene: ANP32C H-InvDB: ANP32C

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ANP32C Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for ANP32C Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ANP32C gene:
    Search GeneIP for patents involving ANP32C

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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