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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ANP32C Gene

pseudogene   GIFtS: 41
GCID: GC04M165118

Acidic (Leucine-Rich) Nuclear Phosphoprotein 32 Family,...

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Acidic (Leucine-Rich) Nuclear Phosphoprotein 32 Family, Member C1 2
PP32R12 3 5
Phosphoprotein 32-Related Protein 12 3
Tumorigenic Protein Pp32r12 3
Acidic Leucine-Rich Nuclear Phosphoprotein 32 Family Member C2
Pp32 Related 12

External Ids:    HGNC: 166751   Entrez Gene: 235202   Ensembl: ENSG000002485467   OMIM: 6068775   UniProtKB: O434233   

Export aliases for ANP32C gene to outside databases

Previous GC identifers: GC04M165967 GC04M165546 GC04M165695 GC04M165475 GC04M165337 GC04M160872


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for ANP32C Gene:
Phosphoprotein 32 (PP32) is a tumor suppressor that can inhibit several types of cancers, including prostate and
breast cancers. The protein encoded by this gene is one of at least two proteins that are similar in amino acid
sequence to PP32 and are part of the same acidic nuclear phosphoprotein gene family. However, unlike PP32, the
encoded protein is tumorigenic. The tumor suppressor function of PP32 has been localized to a 25 amino acid
region that is divergent between PP32 and the protein encoded by this gene. This gene does not contain introns.
(provided by RefSeq, Jul 2008)

GeneCards Summary for ANP32C Gene: 
ANP32C (acidic (leucine-rich) nuclear phosphoprotein 32 family, member C) is a pseudogene. Diseases associated with ANP32C include prostate adenocarcinoma, and prostatitis.

Gene Wiki entry for ANP32C Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000004.11  NC_018915.2  NT_016354.19  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ANP32C gene promoter:
         TBP   NF-1   NF-1/L   LHX3b/Lhx3b   Pax-2   Pax-2a   Nkx2-5   HSF2   LHX3a/Lhx3a   Pax-4a   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for ANP32C

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ANP32C


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q32.3   Ensembl cytogenetic band:  4q32.3   HGNC cytogenetic band: 4q32.3

ANP32C Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ANP32C gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M165118:  view genomic region     (about GC identifiers)

Start:
165,118,159 bp from pter      End:
165,118,863 bp from pter
Size:
705 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: AN32C_HUMAN, O43423 (See protein sequence)
Recommended Name: Acidic leucine-rich nuclear phosphoprotein 32 family member C  
Size: 234 amino acids; 26762 Da
Caution: The His-140 polymorphism is uncertain. It has been found in prostatic cell line without corresponding
normal tissue sample. Cells transfected with this variant expressed at least twice as much proteins than native
cells
Secondary accessions: Q4W5F9

Explore the universe of human proteins at neXtProt for ANP32C: NX_O43423

Explore proteomics data for ANP32C at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_O43423

  • ANP32C Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    ANP32C Protein Expression
    REFSEQ proteins: NP_036535.1  
    Human Recombinant Protein Products for ANP32C: 
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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    ANP32: ANP32 acidic nuclear phosphoproteins

    2 InterPro protein domains:
     IPR001611 Leu-rich_rpt
     IPR025875 Leu-rich_rpt_4

    Graphical View of Domain Structure for InterPro Entry O43423

    ProtoNet protein and cluster: O43423

    UniProtKB/Swiss-Prot: AN32C_HUMAN, O43423
    Similarity: Belongs to the ANP32 family
    Similarity: Contains 4 LRR (leucine-rich) repeats


    ANP32C for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for ANP32C

    3 Interacting proteins for ANP32C (O434233) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    APEX1P276953I2D: score=1 
    SH3GLB2Q9NR463I2D: score=1 
    UBA5Q9GZZ93I2D: score=1 
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ANP32C (AN32C)

    Search CenterWatch for drugs/clinical trials and news about ANP32C

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ANP32C gene: 
    NM_012403.1  

    Unigene Cluster for ANP32C:

    Acidic (leucine-rich) nuclear phosphoprotein 32 family, member C
    Hs.661161  [show with all ESTs]
    Unigene Representative Sequence: BE742749
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000512835(uc011cjk.2)
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    2 DOTS entries:

    DT.452718  DT.92064181 

    1 AceView cDNA sequence:

    NM_012403 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ANP32C expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AGGAGGAGTA
    ANP32C Expression
    About this image


    See ANP32C Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ANP32C

    SOURCE GeneReport for Unigene cluster: Hs.661161

    UniProtKB/Swiss-Prot: AN32C_HUMAN, O43423
    Tissue specificity: Expressed in activated stem cells, such as mobilized CD34+ cells and cord blood CD34+ cells,
    but not in resting bone marrow CD34+ cells. Expressed in a variety of neoplastic cell lines, mainly in prostatic
    adenocarcinoma cell lines. Not expressed in normal prostatic tissue

        SABiosciences Custom PCR Arrays for ANP32C
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    In Situ
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ANP32C

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of human and mouse.

    Orthologs for ANP32C gene from 1 species (see representative species )    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Anp32-ps5 acidic (leucine-rich) nuclear phosphoprotein 32 family, more   --   11 (19.21 cM) 33394879 


    ENSEMBL Gene Tree for ANP32C (if available)
    TreeFam Gene Tree for ANP32C (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ANP32C gene
    4 SIMAP similar genes for ANP32C using alignment to 1 protein entry:     AN32C_HUMAN:
    ANP32D    ANP32A    ANP32E    ANP32B

    ANP32C for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    5 SNPs in ANP32C are shown    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 4 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    VAR_0267024
    ----see VAR_0267022 A V mis40--------
    VAR_0204194
    ----see VAR_0204192 R K mis40--------
    VAR_0267034
    ----see VAR_0267032 Y H mis40--------
    VAR_0483144
    ----see VAR_0483142 L P mis40--------
    VAR_0204204
    ----see VAR_0204202 E G mis40--------

    HapMap Linkage Disequilibrium report for ANP32C (165118159 - 165118863 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for ANP32C: --
    SABiosciences Cancer Mutation PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers for resequencing ANP32C
    DNA2.0 Custom Variant and Variant Library Synthesis for ANP32C

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    OMIM gene information: 606877    OMIM disorders: --

    5 diseases for ANP32C:    About MalaCards
    prostate adenocarcinoma    prostatitis    breast cancer    adenocarcinoma
    prostate cancer


    ANP32C for disorders           About GeneDecksing

    Genetic Association Database (GAD): ANP32C

    Export disorders for ANP32C gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ANP32C gene, integrated from 9 sources (see all 14):
    (articles sorted by number of sources associating them with ANP32C)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Modulation of oncogenic potential by alternative gene use in human prostate cancer. (PubMed id 10086381)1, 2, 3, 9 Kadkol S.S.... Pasternack G.R. (1999)
    2. Identification of a functional mutation in pp32r1 (ANP32C). (PubMed id 15146458)1, 2, 9 Kochevar G.J.... Pasternack G.R. (2004)
    3. The Anp32 family of proteins containing leucine-rich repeats. (PubMed id 15895553)1, 2 Matilla A. and Radrizzani M. (2005)
    4. Identification of sequences required for inhibition of oncogene- mediated transformation by pp32. (PubMed id 10400610)1, 3 Brody J.R.... Pasternack G.R. (1999)
    5. Correction to 'Modulation of oncogenic potential by alternative gene use in human prostate cancer' (PubMed id 10471270)1, 2 Kadkol S.S....Pasternack G.R. (1999)
    6. Dysregulation of cell cycle control caused by overexpr ession of the oncogene pp32r1 (ANP32C) and the Tyr>His mutant pp32r1Y140H. (PubMed id 23403278)1 Buddaseth S....Huyton T. (2013)
    7. Host cell interactome of HIV-1 Rev includes RNA helica ses involved in multiple facets of virus production. (PubMed id 22174317)1 Naji S....Gerace L. (2012)
    8. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PubMed id 17903294)4 Yang Q....O'Donnell C.J. (2007)
    9. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PubMed id 17903301)4 Vasan R.S....Benjamin E.J. (2007)
    10. Framingham Heart Study genome-wide association: results for pulmonary function measures. (PubMed id 17903307)4 Wilk J.B....O'Connor G.T. (2007)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 23520 HGNC: 16675 AceView: ANP32C Ensembl:ENSG00000248546 euGenes: HUgn23520
    ECgene: ANP32C H-InvDB: ANP32C

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ANP32C Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for ANP32C Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ANP32C gene:
    Search GeneIP for patents involving ANP32C

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
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    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    (GIFtS: 73)
    transforming growth factor, beta 1
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