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Aliases for ANP32A-IT1 Gene

Subcategory (RNA class) for ANP32A-IT1 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for ANP32A-IT1 Gene

  • ANP32A Intronic Transcript 1 2 3
  • ANP32A Intronic Transcript 1 (Non-Protein Coding) 2 3
  • Chromosome 15 Open Reading Frame 28 2
  • Non-Protein Coding RNA 321 2
  • NCRNA00321 3
  • HsT18971 3
  • C15orf28 3

External Ids for ANP32A-IT1 Gene

ORGUL Members for ANP32A-IT1 Gene

Previous HGNC Symbols for ANP32A-IT1 Gene

  • C15orf28
  • NCRNA00321

Previous GeneCards Identifiers for ANP32A-IT1 Gene

  • GC15M069097

Summaries for ANP32A-IT1 Gene

GeneCards Summary for ANP32A-IT1 Gene

ANP32A-IT1 (ANP32A Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANP32A-IT1 Gene

Genomics for ANP32A-IT1 Gene

Genomic Location for ANP32A-IT1 Gene

Start:
68,803,821 bp from pter
End:
68,807,101 bp from pter
Size:
3,281 bases
Orientation:
Minus strand

Genomic View for ANP32A-IT1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ANP32A-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANP32A-IT1 Gene

No data available for Regulatory Elements for ANP32A-IT1 Gene

Proteins for ANP32A-IT1 Gene

Post-translational modifications for ANP32A-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ANP32A-IT1 Gene

Domains for ANP32A-IT1 Gene

Gene Families for ANP32A-IT1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ANP32A-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ANP32A-IT1 Gene

Function for ANP32A-IT1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ANP32A-IT1 Gene

Localization for ANP32A-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ANP32A-IT1 Gene

Pathways for ANP32A-IT1 Gene

SuperPathways for ANP32A-IT1 Gene

No Data Available

Interacting Proteins for ANP32A-IT1 Gene

Gene Ontology (GO) - Biological Process for ANP32A-IT1 Gene

None

No data available for Pathways by source for ANP32A-IT1 Gene

Transcripts for ANP32A-IT1 Gene

mRNA/cDNA for ANP32A-IT1 Gene

(3) Additional mRNA sequences :
(2) REFSEQ mRNAs :

Unigene Clusters for ANP32A-IT1 Gene

ANP32A intronic transcript 1 (non-protein coding):
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate ANP32A-IT1
    • Block miRNA regulation of ANP32A-IT1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for ANP32A-IT1

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for ANP32A-IT1 Gene

    No ASD Table

    Relevant External Links for ANP32A-IT1 Gene

    GeneLoc Exon Structure for
    ANP32A-IT1
    ECgene alternative splicing isoforms for
    ANP32A-IT1

    Expression for ANP32A-IT1 Gene

    mRNA expression in normal human tissues for ANP32A-IT1 Gene

    SOURCE GeneReport for Unigene cluster for ANP32A-IT1 Gene Hs.662150

    genes like me logo Genes that share expressions with ANP32A-IT1: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for ANP32A-IT1 Gene

    Orthologs for ANP32A-IT1 Gene

    No data available for Orthologs and Evolution for ANP32A-IT1 Gene

    Paralogs for ANP32A-IT1 Gene

    No data available for Paralogs for ANP32A-IT1 Gene

    Variants for ANP32A-IT1 Gene

    Sequence variations from dbSNP and Humsavar for ANP32A-IT1 Gene

    SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
    rs528788405 -- 68,804,308(+) TCCAA(-/TGG)GCACA nc-transcript-variant

    Structural Variations from Database of Genomic Variants (DGV) for ANP32A-IT1 Gene

    Variant ID Type Subtype PubMed ID
    nsv833046 CNV Loss 17160897

    Relevant External Links for ANP32A-IT1 Gene

    HapMap Linkage Disequilibrium report
    ANP32A-IT1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ANP32A-IT1 Gene

    Disorders for ANP32A-IT1 Gene

    No disorders were found for ANP32A-IT1 Gene.

    No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for ANP32A-IT1 Gene

    Publications for ANP32A-IT1 Gene

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 2 3
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

    Products for ANP32A-IT1 Gene

    Sources for ANP32A-IT1 Gene

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