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Aliases for ANP32A-IT1 Gene

Subcategory (RNA class) for ANP32A-IT1 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for ANP32A-IT1 Gene

  • ANP32A Intronic Transcript 1 2 3
  • ANP32A Intronic Transcript 1 (Non-Protein Coding) 2 3
  • Chromosome 15 Open Reading Frame 28 2
  • Non-Protein Coding RNA 321 2
  • NCRNA00321 3
  • HsT18971 3
  • C15orf28 3

External Ids for ANP32A-IT1 Gene

ORGUL Members for ANP32A-IT1 Gene

Previous HGNC Symbols for ANP32A-IT1 Gene

  • C15orf28
  • NCRNA00321

Previous GeneCards Identifiers for ANP32A-IT1 Gene

  • GC15M069097

Summaries for ANP32A-IT1 Gene

GeneCards Summary for ANP32A-IT1 Gene

ANP32A-IT1 (ANP32A Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANP32A-IT1 Gene

Genomics for ANP32A-IT1 Gene

Regulatory Elements for ANP32A-IT1 Gene

Enhancers for ANP32A-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G068812 0.9 Ensembl dbSUPER 0.4 -6.2 -6200 1.4 ZNF394 DPF2 FOXA1 OSR2 RAD51 PRDM6 GATA3 BCL6B TARDBP BCL6 SPESP1 ANP32A-IT1
GH15G068806 0.4 ENCODE 0.7 +0.4 425 0.2 FEZF1 EZH2 ANP32A-IT1 GC15P068802
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ANP32A-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ANP32A-IT1 Gene

Chromosome:
15
Start:
68,803,821 bp from pter
End:
68,807,101 bp from pter
Size:
3,281 bases
Orientation:
Minus strand

Genomic View for ANP32A-IT1 Gene

Genes around ANP32A-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ANP32A-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANP32A-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANP32A-IT1 Gene

Proteins for ANP32A-IT1 Gene

Post-translational modifications for ANP32A-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ANP32A-IT1 Gene

Domains & Families for ANP32A-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ANP32A-IT1 Gene

Function for ANP32A-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANP32A-IT1 Gene

Localization for ANP32A-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ANP32A-IT1 Gene

Pathways & Interactions for ANP32A-IT1 Gene

SuperPathways for ANP32A-IT1 Gene

No Data Available

Interacting Proteins for ANP32A-IT1 Gene

Gene Ontology (GO) - Biological Process for ANP32A-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ANP32A-IT1 Gene

Drugs & Compounds for ANP32A-IT1 Gene

No Compound Related Data Available

Transcripts for ANP32A-IT1 Gene

mRNA/cDNA for ANP32A-IT1 Gene

(2) REFSEQ mRNAs :
(3) Additional mRNA sequences :

Unigene Clusters for ANP32A-IT1 Gene

ANP32A intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ANP32A-IT1 Gene

No ASD Table

Relevant External Links for ANP32A-IT1 Gene

GeneLoc Exon Structure for
ANP32A-IT1
ECgene alternative splicing isoforms for
ANP32A-IT1

Expression for ANP32A-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ANP32A-IT1 Gene

SOURCE GeneReport for Unigene cluster for ANP32A-IT1 Gene:

Hs.662150
genes like me logo Genes that share expression patterns with ANP32A-IT1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANP32A-IT1 Gene

Orthologs for ANP32A-IT1 Gene

No data available for Orthologs and Evolution for ANP32A-IT1 Gene

Paralogs for ANP32A-IT1 Gene

No data available for Paralogs for ANP32A-IT1 Gene

Variants for ANP32A-IT1 Gene

Sequence variations from dbSNP and Humsavar for ANP32A-IT1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000454020 -- 68,807,105(+) TGCTG(C/T)GTGCC intron-variant, upstream-variant-2KB
rs1000504749 -- 68,806,082(+) ACATA(A/G)CCCCT intron-variant, nc-transcript-variant
rs1000926085 -- 68,805,445(+) AAATG(C/T)AATTT intron-variant, nc-transcript-variant
rs1000955744 -- 68,805,263(+) GACAG(C/T)GACGG intron-variant, nc-transcript-variant
rs1001210882 -- 68,805,807(+) CCTTA(C/T)GGGTC intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for ANP32A-IT1 Gene

Variant ID Type Subtype PubMed ID
esv3636811 CNV loss 21293372
nsv833046 CNV loss 17160897

Relevant External Links for ANP32A-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANP32A-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ANP32A-IT1 Gene

Disorders for ANP32A-IT1 Gene

Relevant External Links for ANP32A-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ANP32A-IT1

No disorders were found for ANP32A-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANP32A-IT1 Gene

Publications for ANP32A-IT1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ANP32A-IT1 Gene

Sources for ANP32A-IT1 Gene

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