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Aliases for ANKUB1 Gene

Aliases for ANKUB1 Gene

  • Ankyrin Repeat And Ubiquitin Domain Containing 1 2 3
  • Ankyrin Repeat And Ubiquitin Domain-Containing 1 3 4
  • C3orf16 3 4
  • Chromosome 3 Open Reading Frame 16 2
  • Protein ANKUB1 3

External Ids for ANKUB1 Gene

Previous Symbols for ANKUB1 Gene

  • C3orf16

Summaries for ANKUB1 Gene

GeneCards Summary for ANKUB1 Gene

ANKUB1 (Ankyrin Repeat And Ubiquitin Domain Containing 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKUB1 Gene

Genomics for ANKUB1 Gene

Genomic Location for ANKUB1 Gene

Start:
149,761,100 bp from pter
End:
149,968,385 bp from pter
Size:
207,286 bases
Orientation:
Minus strand

Genomic View for ANKUB1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ANKUB1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKUB1 Gene

No data available for Regulatory Elements for ANKUB1 Gene

Proteins for ANKUB1 Gene

  • Protein details for ANKUB1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NFN9-ANKUB_HUMAN
    Recommended name:
    Protein ANKUB1
    Protein Accession:
    A6NFN9
    Secondary Accessions:
    • B4E2N8

    Protein attributes for ANKUB1 Gene

    Size:
    424 amino acids
    Molecular mass:
    47648 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ANKUB1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ANKUB1 Gene

Proteomics data for ANKUB1 Gene at MOPED

Post-translational modifications for ANKUB1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ANKUB1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ANKUB1 Gene

Domains for ANKUB1 Gene

Gene Families for ANKUB1 Gene

HGNC:
  • ANKRD :Ankyrin repeat domain containing

Protein Domains for ANKUB1 Gene

genes like me logo Genes that share domains with ANKUB1: view

No data available for UniProtKB/Swiss-Prot for ANKUB1 Gene

Function for ANKUB1 Gene

Gene Ontology (GO) - Molecular Function for ANKUB1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with ANKUB1: view

miRNA for ANKUB1 Gene

miRTarBase miRNAs that target ANKUB1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for ANKUB1 Gene

Localization for ANKUB1 Gene

No data available for Gene Ontology (GO) - Cellular Components for ANKUB1 Gene

Pathways for ANKUB1 Gene

SuperPathways for ANKUB1 Gene

No Data Available

Interacting Proteins for ANKUB1 Gene

Gene Ontology (GO) - Biological Process for ANKUB1 Gene

None

No data available for Pathways by source for ANKUB1 Gene

Transcripts for ANKUB1 Gene

mRNA/cDNA for ANKUB1 Gene

(6) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ANKUB1 Gene

Ankyrin repeat and ubiquitin domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ANKUB1 Gene

No ASD Table

Relevant External Links for ANKUB1 Gene

GeneLoc Exon Structure for
ANKUB1
ECgene alternative splicing isoforms for
ANKUB1

Expression for ANKUB1 Gene

mRNA expression in normal human tissues for ANKUB1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ANKUB1 Gene

This gene is overexpressed in Cervix - Endocervix (10.3), Testis (10.0), and Lung (4.4).

SOURCE GeneReport for Unigene cluster for ANKUB1 Gene Hs.665988

genes like me logo Genes that share expressions with ANKUB1: view

Orthologs for ANKUB1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ANKUB1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ANKUB1 36
  • 99.45 (n)
  • 99.08 (a)
ANKUB1 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ANKUB1 36
  • 87.48 (n)
  • 83.79 (a)
ANKUB1 37
  • 83 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ANKUB1 36
  • 88.77 (n)
  • 84.87 (a)
mouse
(Mus musculus)
Mammalia Gm410 36
  • 86.32 (n)
  • 86.84 (a)
Gm410 16
Gm410 37
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ANKUB1 37
  • 60 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ANKUB1 37
  • 73 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ankub1 36
  • 82.1 (n)
  • 78.41 (a)
lizard
(Anolis carolinensis)
Reptilia ANKUB1 37
  • 57 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ankub1 36
  • 59.85 (n)
  • 52.61 (a)
Str.19383 36
Species with no ortholog for ANKUB1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ANKUB1 Gene

ENSEMBL:
Gene Tree for ANKUB1 (if available)
TreeFam:
Gene Tree for ANKUB1 (if available)

Paralogs for ANKUB1 Gene

No data available for Paralogs for ANKUB1 Gene

Variants for ANKUB1 Gene

Sequence variations from dbSNP and Humsavar for ANKUB1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs541044 -- 149,772,850(+) CACTT(C/T)CCTGT intron-variant
rs563851 -- 149,773,007(+) GACTA(G/T)GAAGC intron-variant
rs564784 -- 149,773,130(+) TTCAG(A/T)TGCCT intron-variant
rs591566 -- 149,792,063(+) ATAAT(G/T)GACTG intron-variant
rs609918 -- 149,793,836(+) ATACA(A/C)TCAAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ANKUB1 Gene

Variant ID Type Subtype PubMed ID
nsv877642 CNV Gain 21882294
esv34142 CNV Loss 18971310
nsv829754 CNV Gain 17160897
esv1145264 CNV Insertion 17803354

Relevant External Links for ANKUB1 Gene

HapMap Linkage Disequilibrium report
ANKUB1

Disorders for ANKUB1 Gene

No disorders were found for ANKUB1 Gene.

No data available for UniProtKB/Swiss-Prot for ANKUB1 Gene

Publications for ANKUB1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 4
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for ANKUB1 Gene

Sources for ANKUB1 Gene

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