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Aliases for ANKRD9 Gene

Aliases for ANKRD9 Gene

  • Ankyrin Repeat Domain 9 2 3

External Ids for ANKRD9 Gene

Previous GeneCards Identifiers for ANKRD9 Gene

  • GC14M096788
  • GC14M100964
  • GC14M100965
  • GC14M100966
  • GC14M102042
  • GC14M102973
  • GC14M083150

Summaries for ANKRD9 Gene

GeneCards Summary for ANKRD9 Gene

ANKRD9 (Ankyrin Repeat Domain 9) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD9 Gene

Genomics for ANKRD9 Gene

Regulatory Elements for ANKRD9 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ANKRD9 Gene

Start:
102,501,760 bp from pter
End:
102,509,799 bp from pter
Size:
8,040 bases
Orientation:
Minus strand

Genomic View for ANKRD9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ANKRD9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD9 Gene

Proteins for ANKRD9 Gene

  • Protein details for ANKRD9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96BM1-ANKR9_HUMAN
    Recommended name:
    Ankyrin repeat domain-containing protein 9
    Protein Accession:
    Q96BM1
    Secondary Accessions:
    • A8K753

    Protein attributes for ANKRD9 Gene

    Size:
    317 amino acids
    Molecular mass:
    34295 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ANKRD9 Gene

Proteomics data for ANKRD9 Gene at MOPED

Post-translational modifications for ANKRD9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ANKRD9 Gene

No data available for DME Specific Peptides for ANKRD9 Gene

Domains for ANKRD9 Gene

Gene Families for ANKRD9 Gene

HGNC:
  • ANKRD :Ankyrin repeat domain containing

Protein Domains for ANKRD9 Gene

Suggested Antigen Peptide Sequences for ANKRD9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96BM1

UniProtKB/Swiss-Prot:

ANKR9_HUMAN :
  • Q96BM1
Similarity:
  • Contains 3 ANK repeats.
genes like me logo Genes that share domains with ANKRD9: view

Function for ANKRD9 Gene

Gene Ontology (GO) - Molecular Function for ANKRD9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with ANKRD9: view

Phenotypes for ANKRD9 Gene

GenomeRNAi human phenotypes for ANKRD9:
genes like me logo Genes that share phenotypes with ANKRD9: view

Animal Model Products

CRISPR Products

miRNA for ANKRD9 Gene

miRTarBase miRNAs that target ANKRD9

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for ANKRD9 Gene

Localization for ANKRD9 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ANKRD9 Gene COMPARTMENTS Subcellular localization image for ANKRD9 gene
Compartment Confidence
cytosol 2
nucleus 2
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ANKRD9 Gene

Pathways for ANKRD9 Gene

SuperPathways for ANKRD9 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ANKRD9 Gene

None

No data available for Pathways by source for ANKRD9 Gene

Transcripts for ANKRD9 Gene

Unigene Clusters for ANKRD9 Gene

Ankyrin repeat domain 9:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ANKRD9

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD9 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c · 2d ^ 3 ^ 4a · 4b
SP1: - -
SP2: - -
SP3: - - - -
SP4:
SP5: -
SP6:

Relevant External Links for ANKRD9 Gene

GeneLoc Exon Structure for
ANKRD9
ECgene alternative splicing isoforms for
ANKRD9

Expression for ANKRD9 Gene

mRNA expression in normal human tissues for ANKRD9 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ANKRD9 Gene

This gene is overexpressed in Muscle - Skeletal (6.1) and Heart - Left Ventricle (4.5).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ANKRD9 Gene

SOURCE GeneReport for Unigene cluster for ANKRD9 Gene Hs.432945

genes like me logo Genes that share expressions with ANKRD9: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for ANKRD9 Gene

Orthologs for ANKRD9 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ANKRD9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ANKRD9 35
  • 99.16 (n)
  • 99.37 (a)
ANKRD9 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ANKRD9 35
  • 89.7 (n)
  • 92.43 (a)
ANKRD9 36
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ANKRD9 35
  • 89.35 (n)
  • 89.87 (a)
ANKRD9 36
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ankrd9 35
  • 79.64 (n)
  • 85.44 (a)
Ankrd9 16
Ankrd9 36
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ANKRD9 36
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ANKRD9 36
  • 70 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ankrd9 35
  • 82.17 (n)
  • 87.03 (a)
chicken
(Gallus gallus)
Aves ANKRD9 35
  • 69.93 (n)
  • 62.68 (a)
ANKRD9 36
  • 63 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ANKRD9 36
  • 63 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ankrd9 35
  • 60.36 (n)
  • 54.91 (a)
zebrafish
(Danio rerio)
Actinopterygii ankrd9 35
  • 56.77 (n)
  • 52.34 (a)
ankrd9 36
  • 49 (a)
OneToOne
Species with no ortholog for ANKRD9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ANKRD9 Gene

ENSEMBL:
Gene Tree for ANKRD9 (if available)
TreeFam:
Gene Tree for ANKRD9 (if available)

Paralogs for ANKRD9 Gene

No data available for Paralogs for ANKRD9 Gene

Variants for ANKRD9 Gene

Sequence variations from dbSNP and Humsavar for ANKRD9 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs1061924 -- 102,509,318(+) GCCAT(C/T)GAAGG intron-variant, upstream-variant-2KB
rs2273905 -- 102,508,662(+) GGAGA(C/T)AGGAG utr-variant-5-prime, intron-variant
rs3742445 -- 102,509,215(+) CCCTG(A/T)GCCGG intron-variant, utr-variant-5-prime
rs3742446 -- 102,509,235(+) GGCGC(C/T)GGGCG intron-variant, utr-variant-5-prime
rs8003479 -- 102,508,547(+) AGCTT(C/T)ATCTG utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for ANKRD9 Gene

Variant ID Type Subtype PubMed ID
nsv832880 CNV Loss 17160897
nsv470671 CNV Gain 18288195
dgv263n27 CNV Gain 19166990
nsv902255 CNV Loss 21882294
nsv522878 CNV Loss 19592680
dgv1984n71 CNV Loss 21882294

Relevant External Links for ANKRD9 Gene

HapMap Linkage Disequilibrium report
ANKRD9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ANKRD9 Gene

Disorders for ANKRD9 Gene

Relevant External Links for ANKRD9

Genetic Association Database (GAD)
ANKRD9
Human Genome Epidemiology (HuGE) Navigator
ANKRD9
genes like me logo Genes that share disorders with ANKRD9: view

No data available for UniProtKB/Swiss-Prot for ANKRD9 Gene

Publications for ANKRD9 Gene

  1. The DNA sequence and analysis of human chromosome 14. (PMID: 12508121) Heilig R. … Weissenbach J. (Nature 2003) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Identification of host proteins required for HIV infection through a functional genomic screen. (PMID: 18187620) Brass A.L. … Elledge S.J. (Science 2008) 3
  4. Genetic associations of variants in genes encoding HIV-dependency factors required for HIV-1 infection. (PMID: 21083371) Chinn L.W. … O'Brien S.J. (J. Infect. Dis. 2010) 48
  5. New gene functions in megakaryopoiesis and platelet formation. (PMID: 22139419) Gieger C. … Soranzo N. (Nature 2011) 48

Products for ANKRD9 Gene

Sources for ANKRD9 Gene

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