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Aliases for ANKRD62P1-PARP4P3 Gene

Aliases for ANKRD62P1-PARP4P3 Gene

  • ANKRD62P1-PARP4P3 Readthrough, Transcribed Pseudogene 2 3 5
  • ANKRD62P1-PARP4P3 Readthrough (Non-Protein Coding) 2 3
  • VWFP1-ANKRD62P1-PARP4P3 3

External Ids for ANKRD62P1-PARP4P3 Gene

Previous GeneCards Identifiers for ANKRD62P1-PARP4P3 Gene

  • GC22M017145
  • GC22M017147

Summaries for ANKRD62P1-PARP4P3 Gene

Entrez Gene Summary for ANKRD62P1-PARP4P3 Gene

  • This locus represents putative naturally-occurring readthrough transcription between two pseudogenes, ANKRD62P1 (ankyrin repeat domain 62 pseudogene 1) and PARP4P3 (poly(ADP-ribose) polymerase family member 4 pseudogene 3). The individual pseudogene loci are not curated as transcribed regions. The readthrough transcript would likely not encode a functional protein. [provided by RefSeq, Jan 2016]

GeneCards Summary for ANKRD62P1-PARP4P3 Gene

ANKRD62P1-PARP4P3 (ANKRD62P1-PARP4P3 Readthrough, Transcribed Pseudogene) is a Pseudogene.

Additional gene information for ANKRD62P1-PARP4P3 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD62P1-PARP4P3 Gene

Genomics for ANKRD62P1-PARP4P3 Gene

Genomic Location for ANKRD62P1-PARP4P3 Gene

Chromosome:
22
Start:
16,653,708 bp from pter
End:
16,675,540 bp from pter
Size:
21,833 bases
Orientation:
Minus strand

Genomic View for ANKRD62P1-PARP4P3 Gene

Genes around ANKRD62P1-PARP4P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ANKRD62P1-PARP4P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANKRD62P1-PARP4P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD62P1-PARP4P3 Gene

No data available for Regulatory Elements for ANKRD62P1-PARP4P3 Gene

Proteins for ANKRD62P1-PARP4P3 Gene

Post-translational modifications for ANKRD62P1-PARP4P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ANKRD62P1-PARP4P3 Gene

Domains & Families for ANKRD62P1-PARP4P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ANKRD62P1-PARP4P3 Gene

Function for ANKRD62P1-PARP4P3 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for ANKRD62P1-PARP4P3
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKRD62P1-PARP4P3 Gene

Localization for ANKRD62P1-PARP4P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ANKRD62P1-PARP4P3 Gene

Pathways & Interactions for ANKRD62P1-PARP4P3 Gene

SuperPathways for ANKRD62P1-PARP4P3 Gene

No Data Available

Interacting Proteins for ANKRD62P1-PARP4P3 Gene

Gene Ontology (GO) - Biological Process for ANKRD62P1-PARP4P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ANKRD62P1-PARP4P3 Gene

Drugs & Compounds for ANKRD62P1-PARP4P3 Gene

No Compound Related Data Available

Transcripts for ANKRD62P1-PARP4P3 Gene

mRNA/cDNA for ANKRD62P1-PARP4P3 Gene

(1) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ANKRD62P1-PARP4P3 Gene

ANKRD62P1-PARP4P3 readthrough transcribed pseudogene:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for ANKRD62P1-PARP4P3
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD62P1-PARP4P3 Gene

No ASD Table

Relevant External Links for ANKRD62P1-PARP4P3 Gene

GeneLoc Exon Structure for
ANKRD62P1-PARP4P3
ECgene alternative splicing isoforms for
ANKRD62P1-PARP4P3

Expression for ANKRD62P1-PARP4P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ANKRD62P1-PARP4P3 Gene

mRNA differential expression in normal tissues according to GTEx for ANKRD62P1-PARP4P3 Gene

This gene is overexpressed in Testis (x21.0).

SOURCE GeneReport for Unigene cluster for ANKRD62P1-PARP4P3 Gene:

Hs.627452
genes like me logo Genes that share expression patterns with ANKRD62P1-PARP4P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKRD62P1-PARP4P3 Gene

Orthologs for ANKRD62P1-PARP4P3 Gene

Evolution for ANKRD62P1-PARP4P3 Gene

ENSEMBL:
Gene Tree for ANKRD62P1-PARP4P3 (if available)
TreeFam:
Gene Tree for ANKRD62P1-PARP4P3 (if available)

No data available for Orthologs for ANKRD62P1-PARP4P3 Gene

Paralogs for ANKRD62P1-PARP4P3 Gene

No data available for Paralogs for ANKRD62P1-PARP4P3 Gene

Variants for ANKRD62P1-PARP4P3 Gene

Sequence variations from dbSNP and Humsavar for ANKRD62P1-PARP4P3 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000086544 -- 16,665,720(+) GAAGA(C/T)ATTTA intron-variant
rs1000151605 -- 16,657,293(+) AGGTT(C/T)GCTCC intron-variant
rs1000196490 -- 16,669,289(+) CAATA(C/T)ATAAA intron-variant
rs1000227388 -- 16,669,050(+) TCGAG(C/G)CACTG intron-variant
rs1000490556 -- 16,660,488(+) AGGTA(C/G)CGGGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ANKRD62P1-PARP4P3 Gene

Variant ID Type Subtype PubMed ID
dgv1276e212 CNV gain 25503493
dgv18e196 CNV duplication 17116639
dgv4458n100 CNV gain 25217958
dgv4459n100 CNV gain 25217958
dgv4460n100 CNV gain 25217958
dgv4461n100 CNV loss 25217958
dgv4462n100 CNV gain 25217958
dgv539n27 CNV gain 19166990
dgv540n27 CNV gain 19166990
dgv7943n54 CNV gain 21841781
dgv7946n54 CNV gain 21841781
dgv7947n54 CNV gain 21841781
dgv819e214 CNV gain 21293372
esv2763696 CNV gain 21179565
esv3575406 CNV gain 25503493
esv3575407 CNV gain 25503493
esv3584480 CNV gain 24956385
esv3584481 CNV gain 24956385
esv3893423 CNV gain 25118596
nsv1056300 CNV loss 25217958
nsv1063326 CNV loss 25217958
nsv471178 CNV gain 18288195
nsv517059 CNV gain+loss 19592680
nsv527637 CNV gain 19592680
nsv588062 CNV gain 21841781
nsv588071 CNV gain 21841781
nsv588077 CNV gain 21841781
nsv966062 CNV duplication 23825009

Relevant External Links for ANKRD62P1-PARP4P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANKRD62P1-PARP4P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ANKRD62P1-PARP4P3 Gene

Disorders for ANKRD62P1-PARP4P3 Gene

Relevant External Links for ANKRD62P1-PARP4P3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ANKRD62P1-PARP4P3

No disorders were found for ANKRD62P1-PARP4P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD62P1-PARP4P3 Gene

Publications for ANKRD62P1-PARP4P3 Gene

  1. Comprehensive screen of genetic variation in DNA repair pathway genes and postmenopausal breast cancer risk. (PMID: 20496165) Monsees GM … Han J (Breast cancer research and treatment 2011) 3 60
  2. Polymorphisms in the base excision repair pathway and graft-versus-host disease. (PMID: 20574454) Arora M … Thyagarajan B (Leukemia 2010) 3 60
  3. Genetic variants of XRCC1, APE1, and ADPRT genes and risk of bladder cancer. (PMID: 20218899) Wang M … Yin C (DNA and cell biology 2010) 3 60
  4. Polygenic model of DNA repair genetic polymorphisms in human breast cancer risk. (PMID: 18701435) Smith TR … Hu JJ (Carcinogenesis 2008) 3 60
  5. Decoding the fine-scale structure of a breast cancer genome and transcriptome. (PMID: 16461635) Volik S … Collins C (Genome research 2006) 3 60

Products for ANKRD62P1-PARP4P3 Gene

Sources for ANKRD62P1-PARP4P3 Gene

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