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Aliases for ANKRD44-IT1 Gene

Subcategory (RNA class) for ANKRD44-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ANKRD44-IT1 Gene

  • ANKRD44 Intronic Transcript 1 2 3 5
  • ANKRD44 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ANKRD44-IT1 Gene

Previous GeneCards Identifiers for ANKRD44-IT1 Gene

  • GC00U933638
  • GC02M198116

Summaries for ANKRD44-IT1 Gene

GeneCards Summary for ANKRD44-IT1 Gene

ANKRD44-IT1 (ANKRD44 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ANKRD44-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD44-IT1 Gene

Genomics for ANKRD44-IT1 Gene

Regulatory Elements for ANKRD44-IT1 Gene

Enhancers for ANKRD44-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H197203 1.8 FANTOM5 Ensembl ENCODE dbSUPER 12.4 +91.2 91234 15 HDGF PKNOX1 FOXA2 YY1 TCF12 GATA2 ATF7 RUNX3 JUNB REST ANKRD44 ANKRD44-IT1 LOC105373824 MOB4 COQ10B SF3B1 MARS2 HSPD1 LOC105373826 LOC101927596
GH02H197252 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12.6 +46.1 46113 7 HDGF PKNOX1 TBL1XR1 RB1 SIN3A BATF ZNF143 ZNF207 ATF7 ETV6 ANKRD44 ANKRD44-IT1 LOC105373824 LOC101927596 COQ10B SF3B1 ATP5G2P3 GC02P197242
GH02H197157 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12.3 +142.9 142935 3 ELF3 HDGF FOXA2 ZSCAN4 RARA YY1 FOS RUNX3 IKZF2 MIXL1 ANKRD44 ANKRD44-IT1 LOC105373824 COQ10B SF3B1 GC02P197128 LOC101927596
GH02H197235 1.5 FANTOM5 Ensembl ENCODE dbSUPER 12.4 +63.7 63687 6 PKNOX1 ZBED1 CEBPB MAFG JUNB CEBPG REST BATF ZNF239 IKZF1 ANKRD44 ANKRD44-IT1 LOC105373824 LOC101927596 GC02P197242 GC02M197228
GH02H197194 1.4 Ensembl ENCODE dbSUPER 12.5 +104.2 104240 8 HDGF TBL1XR1 SIN3A BATF ZBTB40 ELK1 ATF7 RCOR1 ETV6 RUNX3 ANKRD44-IT1 ANKRD44 LOC105373824 SF3B1 RNU6-1029P ENSG00000202434 MOB4 CCDC150 LOC101927596 LOC105373826
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ANKRD44-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ANKRD44-IT1 Gene

Chromosome:
2
Start:
197,250,858 bp from pter
End:
197,302,519 bp from pter
Size:
51,662 bases
Orientation:
Minus strand

Genomic View for ANKRD44-IT1 Gene

Genes around ANKRD44-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ANKRD44-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANKRD44-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD44-IT1 Gene

Proteins for ANKRD44-IT1 Gene

Post-translational modifications for ANKRD44-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ANKRD44-IT1 Gene

Domains & Families for ANKRD44-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ANKRD44-IT1 Gene

Function for ANKRD44-IT1 Gene

Phenotypes From GWAS Catalog for ANKRD44-IT1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for ANKRD44-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKRD44-IT1 Gene

Localization for ANKRD44-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ANKRD44-IT1 Gene

Pathways & Interactions for ANKRD44-IT1 Gene

SuperPathways for ANKRD44-IT1 Gene

No Data Available

Interacting Proteins for ANKRD44-IT1 Gene

Gene Ontology (GO) - Biological Process for ANKRD44-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ANKRD44-IT1 Gene

Drugs & Compounds for ANKRD44-IT1 Gene

No Compound Related Data Available

Transcripts for ANKRD44-IT1 Gene

mRNA/cDNA for ANKRD44-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for ANKRD44-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD44-IT1 Gene

No ASD Table

Relevant External Links for ANKRD44-IT1 Gene

GeneLoc Exon Structure for
ANKRD44-IT1
ECgene alternative splicing isoforms for
ANKRD44-IT1

Expression for ANKRD44-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ANKRD44-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for ANKRD44-IT1 Gene

This gene is overexpressed in Whole Blood (x7.6) and Testis (x6.7).
genes like me logo Genes that share expression patterns with ANKRD44-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKRD44-IT1 Gene

Orthologs for ANKRD44-IT1 Gene

Evolution for ANKRD44-IT1 Gene

ENSEMBL:
Gene Tree for ANKRD44-IT1 (if available)
TreeFam:
Gene Tree for ANKRD44-IT1 (if available)

No data available for Orthologs for ANKRD44-IT1 Gene

Paralogs for ANKRD44-IT1 Gene

No data available for Paralogs for ANKRD44-IT1 Gene

Variants for ANKRD44-IT1 Gene

Sequence variations from dbSNP and Humsavar for ANKRD44-IT1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000003559 -- 197,291,399(+) CAGCT(A/G/T)CTTGG intron-variant
rs1000286954 -- 197,261,537(+) GTAAA(A/C)AAGAT intron-variant
rs1000304431 -- 197,274,576(+) CAGGG(A/C)TTCCT intron-variant
rs1000459831 -- 197,291,073(+) GCATG(C/G)TGGTG intron-variant
rs1000515929 -- 197,303,610(+) TTCTG(A/G)TATAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ANKRD44-IT1 Gene

Variant ID Type Subtype PubMed ID
dgv4149n100 CNV gain 25217958
esv22536 CNV loss 19812545
esv2674646 CNV deletion 23128226
esv3593904 CNV loss 21293372
esv3593905 CNV loss 21293372
nsv1002666 CNV gain 25217958
nsv1126573 CNV deletion 24896259
nsv460015 CNV gain 19166990
nsv584155 CNV gain 21841781

Relevant External Links for ANKRD44-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANKRD44-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ANKRD44-IT1 Gene

Disorders for ANKRD44-IT1 Gene

Relevant External Links for ANKRD44-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ANKRD44-IT1

No disorders were found for ANKRD44-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD44-IT1 Gene

Publications for ANKRD44-IT1 Gene

  1. Genetic analysis of the pathogenic molecular sub-phenotype interferon-alpha identifies multiple novel loci involved in systemic lupus erythematosus. (PMID: 25338677) Kariuki SN … Niewold TB (Genes and immunity 2015) 3 60
  2. Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families. (PMID: 24962325) Kapoor M … Goate A (Drug and alcohol dependence 2014) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60
  4. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 60

Products for ANKRD44-IT1 Gene

Sources for ANKRD44-IT1 Gene

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