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Aliases for ANKRD39 Gene

Aliases for ANKRD39 Gene

  • Ankyrin Repeat Domain 39 2 3

External Ids for ANKRD39 Gene

Previous GeneCards Identifiers for ANKRD39 Gene

  • GC02M096936
  • GC02M096865
  • GC02M097502
  • GC02M091473

Summaries for ANKRD39 Gene

GeneCards Summary for ANKRD39 Gene

ANKRD39 (Ankyrin Repeat Domain 39) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD39 Gene

Genomics for ANKRD39 Gene

Regulatory Elements for ANKRD39 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ANKRD39 Gene

Start:
96,836,611 bp from pter
End:
96,858,095 bp from pter
Size:
21,485 bases
Orientation:
Minus strand

Genomic View for ANKRD39 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ANKRD39 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD39 Gene

Proteins for ANKRD39 Gene

  • Protein details for ANKRD39 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q53RE8-ANR39_HUMAN
    Recommended name:
    Ankyrin repeat domain-containing protein 39
    Protein Accession:
    Q53RE8
    Secondary Accessions:
    • Q59FU2
    • Q8N5X5
    • Q9P0S5

    Protein attributes for ANKRD39 Gene

    Size:
    183 amino acids
    Molecular mass:
    19651 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAF36120.1; Type=Frameshift; Positions=172; Evidence={ECO:0000305}; Sequence=BAD92604.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for ANKRD39 Gene

Proteomics data for ANKRD39 Gene at MOPED

Post-translational modifications for ANKRD39 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ANKRD39 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ANKRD39 Gene

Domains for ANKRD39 Gene

Gene Families for ANKRD39 Gene

HGNC:
  • ANKRD :Ankyrin repeat domain containing

Protein Domains for ANKRD39 Gene

Suggested Antigen Peptide Sequences for ANKRD39 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q53RE8

UniProtKB/Swiss-Prot:

ANR39_HUMAN :
  • Q53RE8
Family:
  • Belongs to the ANKRD39 family.
Similarity:
  • Contains 4 ANK repeats.
genes like me logo Genes that share domains with ANKRD39: view

Function for ANKRD39 Gene

Gene Ontology (GO) - Molecular Function for ANKRD39 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with ANKRD39: view

Animal Model Products

CRISPR Products

miRNA for ANKRD39 Gene

miRTarBase miRNAs that target ANKRD39

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ANKRD39

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for ANKRD39 Gene

Localization for ANKRD39 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ANKRD39 Gene COMPARTMENTS Subcellular localization image for ANKRD39 gene
Compartment Confidence
cytosol 3
extracellular 2
nucleus 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for ANKRD39 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
genes like me logo Genes that share ontologies with ANKRD39: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for ANKRD39 Gene

Pathways for ANKRD39 Gene

SuperPathways for ANKRD39 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ANKRD39 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with ANKRD39: view

No data available for Pathways by source for ANKRD39 Gene

Transcripts for ANKRD39 Gene

mRNA/cDNA for ANKRD39 Gene

(177) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ANKRD39 Gene

Ankyrin repeat domain 39:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ANKRD39

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD39 Gene

No ASD Table

Relevant External Links for ANKRD39 Gene

GeneLoc Exon Structure for
ANKRD39
ECgene alternative splicing isoforms for
ANKRD39

Expression for ANKRD39 Gene

mRNA expression in normal human tissues for ANKRD39 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ANKRD39 Gene

SOURCE GeneReport for Unigene cluster for ANKRD39 Gene Hs.709507

genes like me logo Genes that share expressions with ANKRD39: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ANKRD39 Gene

Orthologs for ANKRD39 Gene

This gene was present in the common ancestor of animals.

Orthologs for ANKRD39 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ANKRD39 35
  • 99.82 (n)
  • 100 (a)
ANKRD39 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ANKRD39 35
  • 88.52 (n)
  • 91.8 (a)
ANKRD39 36
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ANKRD39 35
  • 87.07 (n)
  • 89.07 (a)
ANKRD39 36
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ankrd39 35
  • 87.07 (n)
  • 90.16 (a)
Ankrd39 16
Ankrd39 36
  • 90 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ANKRD39 36
  • 57 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ankrd39 35
  • 86.34 (n)
  • 88.52 (a)
lizard
(Anolis carolinensis)
Reptilia ANKRD39 36
  • 60 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ankrd39 35
  • 58.81 (n)
  • 58.05 (a)
Str.15021 35
zebrafish
(Danio rerio)
Actinopterygii ankrd39 35
  • 58.28 (n)
  • 58.94 (a)
ankrd39 36
  • 52 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP009205 35
  • 50.57 (n)
  • 47.59 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG31919 36
  • 23 (a)
OneToOne
CG44001 35
  • 55.35 (n)
  • 45.91 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 43 (a)
OneToOne
Species with no ortholog for ANKRD39:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ANKRD39 Gene

ENSEMBL:
Gene Tree for ANKRD39 (if available)
TreeFam:
Gene Tree for ANKRD39 (if available)

Paralogs for ANKRD39 Gene

Selected SIMAP similar genes for ANKRD39 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for ANKRD39 Gene

genes like me logo Genes that share paralogs with ANKRD39: view

No data available for Paralogs for ANKRD39 Gene

Variants for ANKRD39 Gene

Sequence variations from dbSNP and Humsavar for ANKRD39 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs4473423 -- 96,850,093(+) TCTTA(A/T)TAACT intron-variant
rs6576988 -- 96,850,206(+) AAATT(G/T)GAATC intron-variant
rs6753987 -- 96,856,083(+) TAAAA(C/T)TGGCT intron-variant
rs10188136 -- 96,850,693(+) aaaaa(A/C)aAAAA intron-variant
rs10203346 -- 96,851,500(+) tgccc(A/G)gcctg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ANKRD39 Gene

Variant ID Type Subtype PubMed ID
dgv650e201 CNV Deletion 23290073
esv5003 CNV Complex 18987735
nsv874677 CNV Loss 21882294
nsv874680 CNV Loss 21882294
nsv526313 CNV Loss 19592680
dgv4249n71 CNV Loss 21882294

Relevant External Links for ANKRD39 Gene

HapMap Linkage Disequilibrium report
ANKRD39

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ANKRD39 Gene

Disorders for ANKRD39 Gene

No disorders were found for ANKRD39 Gene.

No data available for UniProtKB/Swiss-Prot for ANKRD39 Gene

Publications for ANKRD39 Gene

  1. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang Q.-H. … Chen Z. (Genome Res. 2000) 2 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 3 4
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3

Products for ANKRD39 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate ANKRD39
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for ANKRD39
    • Block miRNA regulation of ANKRD39 using miScript Target Protectors

    Sources for ANKRD39 Gene

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