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ANKRD37 Gene

protein-coding   GIFtS: 49
GCID: GC04P186317

Ankyrin Repeat Domain 37

  Search for ANKRD37
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Ankyrin Repeat Domain 371 2     Ankyrin Repeat Domain-Containing Protein 372
Low-Density Lipoprotein Receptor-Related Protein 2-Binding Protein2 3     Low Density Lipoprotein Receptor-Related Protein Binding Protein2
hLrp2bp2 3     LPR2BP3
Lrp2bp2     

External Ids:    HGNC: 295931   Entrez Gene: 3533222   Ensembl: ENSG000001863527   UniProtKB: Q7Z7133   
ORGUL members:         

Export aliases for ANKRD37 gene to outside databases

Previous GC identifers: GC04P186693 GC04P186554 GC04P182071


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ANKRD37 Gene:
ANKRD37 (ankyrin repeat domain 37) is a protein-coding gene. An important paralog of this gene is ANKRD10.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000004.11  NT_016354.20  NC_018915.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the ANKRD37 gene promoter:
         CBF-C   YY1   POU2F1   CBF-B   CBF-A   POU2F1b   POU2F1a   CP1A   POU2F1c   CBF(2)   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidANKRD37 promoter sequence
   Search Chromatin IP Primers for ANKRD37

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ANKRD37


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q35.1   Ensembl cytogenetic band:  4q35.1   HGNC cytogenetic band: 4q35.1

ANKRD37 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ANKRD37 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P186317:  view genomic region     (about GC identifiers)

Start:
186,317,175 bp from pter      End:
186,321,782 bp from pter
Size:
4,608 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: ANR37_HUMAN, Q7Z713 (See protein sequence)
Recommended Name: Ankyrin repeat domain-containing protein 37  
Size: 158 amino acids; 16872 Da

Explore the universe of human proteins at neXtProt for ANKRD37: NX_Q7Z713

Explore proteomics data for ANKRD37 at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys120, Lys126
  • Modification sites at PhosphoSitePlus

  • See ANKRD37 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_859077.1  
    ENSEMBL proteins: 
     ENSP00000421529   ENSP00000335147   ENSP00000427192  

    ANKRD37 Human Recombinant Protein Products:

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    Search eBioscience for ELISAs for ANKRD37 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ANKRD: Ankyrin repeat domain containing

    2 InterPro protein domains:
     IPR002110 Ankyrin_rpt
     IPR020683 Ankyrin_rpt-contain_dom

    Graphical View of Domain Structure for InterPro Entry Q7Z713

    ProtoNet protein and cluster: Q7Z713

    1 Blocks protein domain: IPB002110 Ankyrin repeat signature

    UniProtKB/Swiss-Prot: ANR37_HUMAN, Q7Z713
    Similarity: Contains 3 ANK repeats


    Find genes that share domains with ANKRD37           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding ----
         
    Find genes that share ontologies with ANKRD37           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for ANKRD37:
     Increased gamma-H2AX phosphory 

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for ANKRD37
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       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for ANKRD37
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    miRNA
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    3 qRT-PCR Assays for microRNAs that regulate ANKRD37:
    hsa-miR-1237 hsa-miR-412 hsa-miR-1248
    SwitchGear 3'UTR luciferase reporter plasmidANKRD37 3' UTR sequence
    Inhib. RNA
    Products:
        
    OriGene RNAi products in human, mouse, rat for ANKRD37
    Predesigned siRNA for gene silencing in human, mouse, rat ANKRD37

    Gene Editing
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    Clone
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    GenScript: all cDNA clones in your preferred vector: ANKRD37 (NM_181726)
    Browse Sino Biological Human cDNA Clones
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ANKRD37

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    ANR37_HUMAN, Q7Z713: Nucleus. Cytoplasm
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus5
    extracellular2
    cytosol1
    mitochondrion1
    peroxisome1

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--
    GO:0005737cytoplasm IEA--

    Find genes that share ontologies with ANKRD37           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Pathway & Disease-focused RT2 Profiler PCR Array including ANKRD37: 
              Hypoxia Signaling Pathway in human mouse rat

    Interactions:

        Search GeneGlobe Interaction Network for ANKRD37

    STRING Interaction Network Preview (showing 5 interactants - click image to see more details)

    5 Interacting proteins for ANKRD37 (ENSP000003351474) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    FEM1BENSP000003072984STRING: ENSP00000307298
    UBCENSP000003448184STRING: ENSP00000344818
    UBBENSP000003046974STRING: ENSP00000304697
    FEM1AENSP000002698564STRING: ENSP00000269856
    FEM1CENSP000002744574STRING: ENSP00000274457
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ANKRD37 (ANR37)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ANKRD37 gene: 
    NM_181726.2  

    Unigene Cluster for ANKRD37:

    Ankyrin repeat domain 37
    Hs.508154  [show with all ESTs]
    Unigene Representative Sequence: AK127395
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000507479 ENST00000507753 ENST00000335174(uc003ixm.3) ENST00000511393(uc011cks.2)
    ENST00000511311 ENST00000506424
    miRNA
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    3 qRT-PCR Assays for microRNAs that regulate ANKRD37:
    hsa-miR-1237 hsa-miR-412 hsa-miR-1248
    SwitchGear 3'UTR luciferase reporter plasmidANKRD37 3' UTR sequence
    Inhib. RNA
    Products:
         
    OriGene RNAi products in human, mouse, rat for ANKRD37
    Predesigned siRNA for gene silencing in human, mouse, rat ANKRD37
    Clone
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    GenScript: all cDNA clones in your preferred vector: ANKRD37 (NM_181726)
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    Primer
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    OriGene qPCR primer pairs and template standards for ANKRD37
    OriGene qSTAR qPCR primer pairs in human, mouse for ANKRD37
    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat ANKRD37
      QuantiTect SYBR Green Assays in human, mouse, rat ANKRD37
      QuantiFast Probe-based Assays in human, mouse, rat ANKRD37

    Additional mRNA sequence: 

    AK127395.1 AK303243.1 AY296056.1 BC088376.1 

    8 DOTS entries:

    DT.99928380  DT.100810742  DT.92440901  DT.97858856  DT.121224482  DT.100810754  DT.40129238  DT.121224610 

    Selected AceView cDNA sequences (see all 107):

    CA391165 AI950798 CA748553 BM987064 R81196 AA934911 AA961059 AA885898 
    AI375295 AI937434 AI797540 CA450084 W23609 AI216877 AI333984 BM997127 
    AA886870 AW664874 AA869002 BM716455 BM696704 AW610097 BQ575105 AI382103 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD37    About this scheme

    ExUns: 1 ^ 2a · 2b · 2c · 2d ^ 3a · 3b ^ 4a · 4b · 4c ^ 5a · 5b ^ 6
    SP1:                                                                    -         
    SP2:                                                                              
    SP3:        -     -     -     -                                                   
    SP4:        -                                                                     
    SP5:                                            -                                 


    ECgene alternative splicing isoforms for ANKRD37

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ANKRD37 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CCTATAATAT
    ANKRD37 Expression
    About this image

    ANKRD37 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ANKRD37 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.508154

    UniProtKB/Swiss-Prot: ANR37_HUMAN, Q7Z713
    Tissue specificity: Mainly expressed in testis, small intestine, colon, blood leukocytes and in pancreatic
    adenocarcinoma cells

        Pathway & Disease-focused RT2 Profiler PCR Array including ANKRD37: 
              Hypoxia Signaling Pathway in human mouse rat

    Primer
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ANKRD37

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for ANKRD37 gene from Selected species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Ankrd371 , 5 ankyrin repeat domain 371, 5 78.9(n)1
    77.22(a)1
      8 (25.99 cM)5
    6548241  NM_001039562.11  NP_001034651.11 
     459969025 
    lizard
    (Anolis carolinensis)
    Reptilia ANKRD376
    ankyrin repeat domain 37
    36(a)
    1 ↔ 1
    5(112874928-112900623)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.80332 Xenopus laevis transcribed sequence with strong similarity to protein refNP_286085.1 (E. coli) beta-D-galactosidase [Escherichia coli O157H7 EDL933] less 73.71(n)    BJ616822.1 
    zebrafish
    (Danio rerio)
    Actinopterygii ankrd371 ankyrin repeat domain 37 58.13(n)
    53.6(a)
      793783  NM_001145614.1  NP_001139086.1 


    ENSEMBL Gene Tree for ANKRD37 (if available)
    TreeFam Gene Tree for ANKRD37 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ANKRD37 gene
    ANKRD102  
    1 SIMAP similar gene for ANKRD37 using alignment to 3 protein entries:     ANR37_HUMAN (see all proteins):
    ANKRD10

    Find genes that share paralogs with ANKRD37           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ANKRD37 (see all 116)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 4 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1152238031,2
    C--186315916(+) TCTCAC/TCTATT 1 -- us2k10--------
    rs1423874951,2
    --186315950(+) GTTTTC/TTTTAA 1 -- us2k10--------
    rs1827027211,2
    --186315984(+) GTTCTA/GGAAAC 1 -- us2k10--------
    rs1875280141,2
    --186316061(+) CTTAGA/GTCATC 1 -- us2k10--------
    rs1459325861,2
    --186316091(+) TCCCAC/GCTGCT 1 -- us2k10--------
    rs1398896911,2
    --186316150(+) AAATGC/TACTTA 1 -- us2k10--------
    rs1432566951,2
    --186316164(+) TGTTTC/TTGTGC 1 -- us2k10--------
    rs1898466671,2
    --186316272(+) AGCAAC/TGGACA 1 -- us2k10--------
    rs1824896531,2
    C--186316354(+) TGTAAC/TAGGAA 1 -- us2k10--------
    rs1870318171,2
    --186316367(+) TAAAAA/CATAAC 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for ANKRD37 (186317175 - 186321782 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 3 variations for ANKRD37:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv881506CNV Gain21882294
    nsv428456CNV Gain+Loss18775914
    dgv1724e1CNV Complex17122850

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing ANKRD37
    DNA2.0 Custom Variant and Variant Library Synthesis for ANKRD37

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ANKRD37 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with ANKRD37)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Molecular cloning and characterization of a novel human gene containing 4 ankyrin repeat domains. (PubMed id 15809689)1, 2, 9 Li J....Mao Y. (Cell. Mol. Biol. Lett. 2005)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
    4. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (amp 2011)
    5. An integrative genomics approach identifies Hypoxia Inducible Factor-1 (HIF-1)-target genes that form the core response to hypoxia. (PubMed id 19491311)1 Benita Y....Xavier R.J. (Nucleic Acids Res. 2009)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 353322 HGNC: 29593 AceView: Lrp2bp Ensembl:ENSG00000186352 euGenes: HUgn353322
    ECgene: ANKRD37 H-InvDB: ANKRD37

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ANKRD37 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ANKRD37 gene:
    Search GeneIP for patents involving ANKRD37

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    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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