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Aliases for ANKRD34C Gene

Aliases for ANKRD34C Gene

  • Ankyrin Repeat Domain 34C 2 3

External Ids for ANKRD34C Gene

Previous GeneCards Identifiers for ANKRD34C Gene

  • GC15P077372
  • GC15P079585
  • GC15P056333

Summaries for ANKRD34C Gene

GeneCards Summary for ANKRD34C Gene

ANKRD34C (Ankyrin Repeat Domain 34C) is a Protein Coding gene. An important paralog of this gene is ANKRD34B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD34C Gene

Genomics for ANKRD34C Gene

Regulatory Elements for ANKRD34C Gene

Genomic Location for ANKRD34C Gene

Start:
79,282,804 bp from pter
End:
79,298,239 bp from pter
Size:
15,436 bases
Orientation:
Plus strand

Genomic View for ANKRD34C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ANKRD34C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD34C Gene

Proteins for ANKRD34C Gene

  • Protein details for ANKRD34C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0C6C1-AN34C_HUMAN
    Recommended name:
    Ankyrin repeat domain-containing protein 34C
    Protein Accession:
    P0C6C1
    Secondary Accessions:
    • H3BNM1

    Protein attributes for ANKRD34C Gene

    Size:
    535 amino acids
    Molecular mass:
    58256 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ANKRD34C Gene

Proteomics data for ANKRD34C Gene at MOPED

Post-translational modifications for ANKRD34C Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ANKRD34C Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ANKRD34C Gene

Domains for ANKRD34C Gene

Gene Families for ANKRD34C Gene

HGNC:
  • ANKRD :Ankyrin repeat domain containing

Protein Domains for ANKRD34C Gene

Suggested Antigen Peptide Sequences for ANKRD34C Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P0C6C1

UniProtKB/Swiss-Prot:

AN34C_HUMAN :
  • P0C6C1
Family:
  • Belongs to the ANKRD34 family.
Similarity:
  • Contains 4 ANK repeats.
genes like me logo Genes that share domains with ANKRD34C: view

Function for ANKRD34C Gene

Gene Ontology (GO) - Molecular Function for ANKRD34C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with ANKRD34C: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ANKRD34C Gene

Localization for ANKRD34C Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ANKRD34C Gene COMPARTMENTS Subcellular localization image for ANKRD34C gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ANKRD34C Gene

Pathways for ANKRD34C Gene

SuperPathways for ANKRD34C Gene

No Data Available

Interacting Proteins for ANKRD34C Gene

Gene Ontology (GO) - Biological Process for ANKRD34C Gene

None

No data available for Pathways by source for ANKRD34C Gene

Transcripts for ANKRD34C Gene

mRNA/cDNA for ANKRD34C Gene

(2) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ANKRD34C Gene

Ankyrin repeat domain 34C:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ANKRD34C

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD34C Gene

No ASD Table

Relevant External Links for ANKRD34C Gene

GeneLoc Exon Structure for
ANKRD34C
ECgene alternative splicing isoforms for
ANKRD34C

Expression for ANKRD34C Gene

mRNA expression in normal human tissues for ANKRD34C Gene

mRNA differential expression in normal tissues according to GTEx for ANKRD34C Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (8.1), Brain - Hypothalamus (7.3), Brain - Frontal Cortex (BA9) (6.3), Brain - Cerebellum (5.8), Brain - Cortex (4.5), and Brain - Anterior cingulate cortex (BA24) (4.5).

Protein differential expression in normal tissues for ANKRD34C Gene

This gene is overexpressed in Peripheral blood mononuclear cells (61.2) and Retina (7.8).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for ANKRD34C Gene

SOURCE GeneReport for Unigene cluster for ANKRD34C Gene Hs.531231

genes like me logo Genes that share expressions with ANKRD34C: view

Expression partners for ANKRD34C Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for ANKRD34C Gene

Orthologs for ANKRD34C Gene

This gene was present in the common ancestor of chordates.

Orthologs for ANKRD34C Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ANKRD34C 35
  • 84.52 (n)
  • 88.39 (a)
ANKRD34C 36
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ANKRD34C 35
  • 85.14 (n)
  • 88.58 (a)
ANKRD34C 36
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ankrd34c 35
  • 86.43 (n)
  • 90.43 (a)
Ankrd34c 16
Ankrd34c 36
  • 90 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ANKRD34C 35
  • 99.5 (n)
  • 99.63 (a)
ANKRD34C 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ankrd34c 35
  • 86.68 (n)
  • 91.37 (a)
oppossum
(Monodelphis domestica)
Mammalia ANKRD34C 36
  • 80 (a)
OneToOne
chicken
(Gallus gallus)
Aves ANKRD34C 35
  • 65.09 (n)
  • 66.12 (a)
ANKRD34C 36
  • 62 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii LOC566743 35
  • 63.93 (n)
  • 66.16 (a)
ANKRD34C 36
  • 64 (a)
OneToOne
Species with no ortholog for ANKRD34C:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ANKRD34C Gene

ENSEMBL:
Gene Tree for ANKRD34C (if available)
TreeFam:
Gene Tree for ANKRD34C (if available)

Paralogs for ANKRD34C Gene

Paralogs for ANKRD34C Gene

Selected SIMAP similar genes for ANKRD34C Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ANKRD34C: view

Variants for ANKRD34C Gene

Sequence variations from dbSNP and Humsavar for ANKRD34C Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs185918 -- 79,290,259(+) cctgg(G/T)ctcaa intron-variant
rs369885 -- 79,297,695(+) ATACT(C/T)TCTCA utr-variant-3-prime
rs373947 -- 79,296,504(+) TATCT(A/C)TATGA utr-variant-3-prime
rs374514 -- 79,297,735(+) CATGT(C/G)AATGA utr-variant-3-prime
rs379647 -- 79,296,089(-) ACATA(A/T)ATGGG utr-variant-3-prime

Relevant External Links for ANKRD34C Gene

HapMap Linkage Disequilibrium report
ANKRD34C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ANKRD34C Gene

Disorders for ANKRD34C Gene

No disorders were found for ANKRD34C Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for ANKRD34C Gene

Publications for ANKRD34C Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  2. Analysis of the DNA sequence and duplication history of human chromosome 15. (PMID: 16572171) Zody M.C. … Nusbaum C. (Nature 2006) 4

Products for ANKRD34C Gene

Sources for ANKRD34C Gene

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