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Aliases for ANKRD33 Gene

Aliases for ANKRD33 Gene

  • Ankyrin Repeat Domain 33 2 3 5
  • C12orf7 3 4
  • Ankyrin Repeat Domain-Containing Protein 33 3
  • Chromosome 12 Open Reading Frame 7 2
  • PANKY 3

External Ids for ANKRD33 Gene

Previous HGNC Symbols for ANKRD33 Gene

  • C12orf7

Previous GeneCards Identifiers for ANKRD33 Gene

  • GC12P050569
  • GC12P052281
  • GC12P049316

Summaries for ANKRD33 Gene

GeneCards Summary for ANKRD33 Gene

ANKRD33 (Ankyrin Repeat Domain 33) is a Protein Coding gene. An important paralog of this gene is ANKRD33B.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD33 Gene

Genomics for ANKRD33 Gene

Regulatory Elements for ANKRD33 Gene

Enhancers for ANKRD33 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G051855 1.3 FANTOM5 Ensembl ENCODE 21.2 -31.9 -31861 1.3 CTCF SOX13 TBP TEAD4 RBBP5 TEAD3 POLR2A ZNF600 PRDM10 PCBP1 ANKRD33 SLC4A8 NR4A1 GRASP GALNT6 FIGNL2
GH12G051969 2 FANTOM5 Ensembl ENCODE dbSUPER 11.4 +84.6 84633 5.2 PKNOX1 FOXA2 ARNT ZNF2 YY1 ZNF766 ZNF143 FOS JUNB REST NR4A1 HNRNPA3P10 GRASP ACVR1B ACVRL1 ANKRD33 GC12P051989
GH12G051975 1.4 Ensembl ENCODE dbSUPER 12 +89.1 89090 2.5 HDAC1 ELF3 HNRNPUL1 ATF1 ARID4B THRB RAD21 RARA GATA2 FOS ACVR1B GRASP NR4A1 ACVRL1 ANKRD33 ENSG00000260473 GC12P051989
GH12G052003 1.3 Ensembl ENCODE dbSUPER 10.7 +116.3 116330 1.0 CTCF RB1 ARID4B ZNF195 BMI1 ZNF48 RAD21 GLIS2 ZNF143 SMC3 ANKRD33 GRASP GC12M051995
GH12G051980 1 ENCODE dbSUPER 12 +92.6 92552 0.2 HDGF CTCF ARID4B MAX RAD21 RFX5 ZFHX2 GATA2 ZNF366 PATZ1 GRASP NR4A1 ACVRL1 ANKRD33 ACVR1B GC12P051989
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ANKRD33 on UCSC Golden Path with GeneCards custom track

Genomic Location for ANKRD33 Gene

Chromosome:
12
Start:
51,887,960 bp from pter
End:
51,891,721 bp from pter
Size:
3,762 bases
Orientation:
Plus strand

Genomic View for ANKRD33 Gene

Genes around ANKRD33 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ANKRD33 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANKRD33 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD33 Gene

Proteins for ANKRD33 Gene

  • Protein details for ANKRD33 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7Z3H0-ANR33_HUMAN
    Recommended name:
    Ankyrin repeat domain-containing protein 33
    Protein Accession:
    Q7Z3H0
    Secondary Accessions:
    • Q0VAA7
    • Q5K619
    • Q5K621
    • Q5K622
    • Q5K623
    • Q5K624
    • Q6ZUN0

    Protein attributes for ANKRD33 Gene

    Size:
    272 amino acids
    Molecular mass:
    29011 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAQ07991.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=AAQ07992.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for ANKRD33 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ANKRD33 Gene

Post-translational modifications for ANKRD33 Gene

No Post-translational modifications

Other Protein References for ANKRD33 Gene

No data available for DME Specific Peptides for ANKRD33 Gene

Domains & Families for ANKRD33 Gene

Gene Families for ANKRD33 Gene

Protein Domains for ANKRD33 Gene

Suggested Antigen Peptide Sequences for ANKRD33 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ANKRD33: view

No data available for UniProtKB/Swiss-Prot for ANKRD33 Gene

Function for ANKRD33 Gene

genes like me logo Genes that share phenotypes with ANKRD33: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKRD33 Gene

Localization for ANKRD33 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ANKRD33 gene
Compartment Confidence
nucleus 3
cytosol 3
plasma membrane 1
extracellular 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for ANKRD33 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005829 cytosol IEA --
genes like me logo Genes that share ontologies with ANKRD33: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for ANKRD33 Gene

Pathways & Interactions for ANKRD33 Gene

SuperPathways for ANKRD33 Gene

No Data Available

Interacting Proteins for ANKRD33 Gene

Gene Ontology (GO) - Biological Process for ANKRD33 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter IBA --
GO:0035914 skeletal muscle cell differentiation IEA --
GO:2000678 negative regulation of transcription regulatory region DNA binding IBA --
genes like me logo Genes that share ontologies with ANKRD33: view

No data available for Pathways by source and SIGNOR curated interactions for ANKRD33 Gene

Transcripts for ANKRD33 Gene

Unigene Clusters for ANKRD33 Gene

Ankyrin repeat domain 33:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD33 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c ^ 7a · 7b
SP1: - - -
SP2: - -
SP3: - - - -
SP4: - - - - -
SP5:
SP6:

Relevant External Links for ANKRD33 Gene

GeneLoc Exon Structure for
ANKRD33
ECgene alternative splicing isoforms for
ANKRD33

Expression for ANKRD33 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ANKRD33 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ANKRD33 Gene

This gene is overexpressed in Pituitary (x6.9).

Protein differential expression in normal tissues from HIPED for ANKRD33 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ANKRD33 Gene



Protein tissue co-expression partners for ANKRD33 Gene

NURSA nuclear receptor signaling pathways regulating expression of ANKRD33 Gene:

ANKRD33

SOURCE GeneReport for Unigene cluster for ANKRD33 Gene:

Hs.433492

Evidence on tissue expression from TISSUES for ANKRD33 Gene

  • Eye(4)
genes like me logo Genes that share expression patterns with ANKRD33: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKRD33 Gene

Orthologs for ANKRD33 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ANKRD33 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ANKRD33 34 35
  • 99.34 (n)
cow
(Bos Taurus)
Mammalia LOC787340 34
  • 84.31 (n)
ANKRD33 35
  • 75 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ANKRD33 35 34
  • 82.29 (n)
OneToOne
mouse
(Mus musculus)
Mammalia Ankrd33 34 16 35
  • 79.08 (n)
chicken
(Gallus gallus)
Aves ANKRD33 34
  • 58.31 (n)
lizard
(Anolis carolinensis)
Reptilia ANKRD33 35
  • 37 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii LOC569518 34
  • 49.11 (n)
ankrd33ab 35
  • 32 (a)
OneToMany
ankrd33aa 35
  • 31 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 21 (a)
OneToMany
Species where no ortholog for ANKRD33 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ANKRD33 Gene

ENSEMBL:
Gene Tree for ANKRD33 (if available)
TreeFam:
Gene Tree for ANKRD33 (if available)

Paralogs for ANKRD33 Gene

Paralogs for ANKRD33 Gene

(1) SIMAP similar genes for ANKRD33 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with ANKRD33: view

Variants for ANKRD33 Gene

Sequence variations from dbSNP and Humsavar for ANKRD33 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000360520 -- 51,888,853(+) GGGGG(C/T)ATCTT intron-variant
rs1000699138 -- 51,887,605(+) CTAGA(A/G)TTCAG upstream-variant-2KB
rs1001367417 -- 51,889,958(+) TCGTT(A/C)AGGGG intron-variant
rs1001375659 -- 51,891,980(+) TTTAG(A/G)GAGCC downstream-variant-500B
rs1001462321 -- 51,889,658(+) GGGGG(C/G)ACATG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ANKRD33 Gene

Variant ID Type Subtype PubMed ID
dgv1500n100 CNV gain 25217958
esv2761739 CNV gain 21179565
nsv558895 CNV loss 21841781
nsv826373 CNV gain 20364138

Variation tolerance for ANKRD33 Gene

Residual Variation Intolerance Score: 90.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 15.68; 97.30% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ANKRD33 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANKRD33

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ANKRD33 Gene

Disorders for ANKRD33 Gene

Relevant External Links for ANKRD33

Genetic Association Database (GAD)
ANKRD33
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ANKRD33

No disorders were found for ANKRD33 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD33 Gene

Publications for ANKRD33 Gene

  1. Panky, a novel photoreceptor-specific ankyrin repeat protein, is a transcriptional cofactor that suppresses CRX-regulated photoreceptor genes. (PMID: 20026326) Sanuki R. … Furukawa T. (FEBS Lett. 2010) 2 3 64
  2. The finished DNA sequence of human chromosome 12. (PMID: 16541075) Scherer S.E. … Gibbs R.A. (Nature 2006) 3 4 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  4. Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia. (PMID: 21107309) McClay J.L. … van den Oord E.J. (Neuropsychopharmacology 2011) 3 64
  5. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4 64

Products for ANKRD33 Gene

Sources for ANKRD33 Gene

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