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Aliases for ANKRD30BL Gene

Aliases for ANKRD30BL Gene

  • Ankyrin Repeat Domain 30B-Like 2 3
  • Ankyrin Repeat Domain 30B Pseudogene 3 2 3
  • NCRNA00164 3 4
  • Non-Protein Coding RNA 164 2
  • ANKRD30BP3 3

External Ids for ANKRD30BL Gene

Previous HGNC Symbols for ANKRD30BL Gene

  • NCRNA00164
  • ANKRD30BP3

Previous GeneCards Identifiers for ANKRD30BL Gene

  • GC02M132906
  • GC02M124898

Summaries for ANKRD30BL Gene

GeneCards Summary for ANKRD30BL Gene

ANKRD30BL (Ankyrin Repeat Domain 30B-Like) is a Protein Coding gene. An important paralog of this gene is POTEJ.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD30BL Gene

Genomics for ANKRD30BL Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ANKRD30BL Gene

Start:
132,147,591 bp from pter
End:
132,257,969 bp from pter
Size:
110,379 bases
Orientation:
Minus strand

Genomic View for ANKRD30BL Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ANKRD30BL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD30BL Gene

No data available for Regulatory Elements for ANKRD30BL Gene

Proteins for ANKRD30BL Gene

  • Protein details for ANKRD30BL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A7E2S9-A30BL_HUMAN
    Recommended name:
    Putative ankyrin repeat domain-containing protein 30B-like
    Protein Accession:
    A7E2S9
    Secondary Accessions:
    • B8ZZL7

    Protein attributes for ANKRD30BL Gene

    Size:
    258 amino acids
    Molecular mass:
    28549 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ANKRD30BL Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ANKRD30BL Gene

Proteomics data for ANKRD30BL Gene at MOPED

Post-translational modifications for ANKRD30BL Gene

No Post-translational modifications

Other Protein References for ANKRD30BL Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for ANKRD30BL Gene

Domains for ANKRD30BL Gene

Gene Families for ANKRD30BL Gene

HGNC:
  • ANKRD :Ankyrin repeat domain containing

Protein Domains for ANKRD30BL Gene

Suggested Antigen Peptide Sequences for ANKRD30BL Gene

Graphical View of Domain Structure for InterPro Entry

A7E2S9

UniProtKB/Swiss-Prot:

A30BL_HUMAN :
  • A7E2S9
Similarity:
  • Contains 4 ANK repeats.
genes like me logo Genes that share domains with ANKRD30BL: view

Function for ANKRD30BL Gene

Gene Ontology (GO) - Molecular Function for ANKRD30BL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with ANKRD30BL: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ANKRD30BL Gene

Localization for ANKRD30BL Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ANKRD30BL Gene COMPARTMENTS Subcellular localization image for ANKRD30BL gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ANKRD30BL Gene

Pathways for ANKRD30BL Gene

SuperPathways for ANKRD30BL Gene

No Data Available

Interacting Proteins for ANKRD30BL Gene

Gene Ontology (GO) - Biological Process for ANKRD30BL Gene

None

No data available for Pathways by source for ANKRD30BL Gene

Transcripts for ANKRD30BL Gene

mRNA/cDNA for ANKRD30BL Gene

(5) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ANKRD30BL Gene

Ankyrin repeat domain 30B-like:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate ANKRD30BL
    • Block miRNA regulation of ANKRD30BL using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for ANKRD30BL

    Primer Products

    • OriGene qSTAR qPCR primer pairs in human,mouse,rat for ANKRD30BL
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD30BL Gene

    No ASD Table

    Relevant External Links for ANKRD30BL Gene

    GeneLoc Exon Structure for
    ANKRD30BL
    ECgene alternative splicing isoforms for
    ANKRD30BL

    Expression for ANKRD30BL Gene

    mRNA expression in normal human tissues for ANKRD30BL Gene

    mRNA differential expression in normal tissues according to GTEx for ANKRD30BL Gene

    This gene is overexpressed in Testis (20.0).

    Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ANKRD30BL Gene

    SOURCE GeneReport for Unigene cluster for ANKRD30BL Gene Hs.380689

    genes like me logo Genes that share expressions with ANKRD30BL: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for ANKRD30BL Gene

    Orthologs for ANKRD30BL Gene

    This gene was present in the common ancestor of chordates.

    Orthologs for ANKRD30BL Gene

    Organism Taxonomy Gene Similarity Type Details
    chimpanzee
    (Pan troglodytes)
    Mammalia ANKRD30BL 36
    • 77 (a)
    OneToOne
    cow
    (Bos Taurus)
    Mammalia -- 36
    OneToMany
    dog
    (Canis familiaris)
    Mammalia -- 36
    • 4 (a)
    ManyToMany
    -- 36
    • 39 (a)
    ManyToMany
    -- 36
    • 10 (a)
    ManyToMany
    -- 36
    • 4 (a)
    ManyToMany
    -- 36
    ManyToMany
    -- 36
    ManyToMany
    -- 36
    • 37 (a)
    ManyToMany
    -- 36
    • 41 (a)
    ManyToMany
    mouse
    (Mus musculus)
    Mammalia Gm1758 36
    • 31 (a)
    ManyToMany
    platypus
    (Ornithorhynchus anatinus)
    Mammalia -- 36
    • 3 (a)
    OneToMany
    chicken
    (Gallus gallus)
    Aves -- 36
    • 6 (a)
    OneToMany
    lizard
    (Anolis carolinensis)
    Reptilia -- 36
    • 32 (a)
    ManyToMany
    zebrafish
    (Danio rerio)
    Actinopterygii ANKRD7 36
    • 3 (a)
    OneToMany
    Species with no ortholog for ANKRD30BL:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • fruit fly (Drosophila melanogaster)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • oppossum (Monodelphis domestica)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • rainbow trout (Oncorhynchus mykiss)
    • rat (Rattus norvegicus)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea squirt (Ciona intestinalis)
    • sea squirt (Ciona savignyi)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)

    Evolution for ANKRD30BL Gene

    ENSEMBL:
    Gene Tree for ANKRD30BL (if available)
    TreeFam:
    Gene Tree for ANKRD30BL (if available)

    Paralogs for ANKRD30BL Gene

    genes like me logo Genes that share paralogs with ANKRD30BL: view

    Variants for ANKRD30BL Gene

    Sequence variations from dbSNP and Humsavar for ANKRD30BL Gene

    SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
    rs435560 -- 132,259,305(-) ATTTA(C/T)TCAGg upstream-variant-2KB
    rs459105 -- 132,249,323(+) gcctc(C/G)aagtg intron-variant
    rs1662464 -- 132,216,930(-) tctag(C/T)tttta intron-variant
    rs1708848 -- 132,249,073(-) TGTGT(A/G/T)CATTC intron-variant
    rs1814883 -- 132,204,467(-) ACATA(C/T)ATACA intron-variant

    Structural Variations from Database of Genomic Variants (DGV) for ANKRD30BL Gene

    Variant ID Type Subtype PubMed ID
    dgv1247e1 CNV Complex 17122850
    essv1836 CNV CNV 17122850
    essv4862 CNV CNV 17122850
    nsv875123 CNV Gain 21882294
    dgv1261e1 CNV Complex 17122850
    essv21727 CNV CNV 17122850
    nsv875126 CNV Gain 21882294
    nsv526029 CNV Gain 19592680
    nsv875129 CNV Loss 21882294
    esv32851 CNV Gain+Loss 17666407
    esv2448107 CNV Loss 19546169
    essv899 CNV CNV 17122850
    nsv875130 CNV Loss 21882294
    dgv4315n71 CNV Gain 21882294
    nsv875133 CNV Gain 21882294
    esv25933 CNV Gain 19812545
    essv1359 CNV CNV 17122850
    nsv10190 CNV Gain 18304495
    nsv10191 CNV Gain+Loss 18304495
    esv2720798 CNV Deletion 23290073
    esv2720799 CNV Deletion 23290073
    nsv819534 CNV Insertion 19587683
    esv2511278 CNV Gain 19546169
    esv2657667 CNV Deletion 23128226
    esv2513311 CNV Gain 19546169
    esv2720800 CNV Deletion 23290073
    dgv660e201 CNV Deletion 23290073
    esv2720801 CNV Deletion 23290073
    esv2720802 CNV Deletion 23290073
    esv2720803 CNV Deletion 23290073
    esv2720804 CNV Deletion 23290073
    nsv820317 CNV Duplication 20802225
    nsv821716 CNV Gain 20364138
    esv2466772 CNV Gain 19546169
    esv2720805 CNV Deletion 23290073
    dgv666n67 CNV Gain 20364138
    nsv2928 CNV Insertion 18451855
    esv2583265 CNV Gain 19546169
    nsv819671 CNV Gain 19587683

    Relevant External Links for ANKRD30BL Gene

    HapMap Linkage Disequilibrium report
    ANKRD30BL

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ANKRD30BL Gene

    Disorders for ANKRD30BL Gene

    No disorders were found for ANKRD30BL Gene.

    No data available for UniProtKB/Swiss-Prot for ANKRD30BL Gene

    Publications for ANKRD30BL Gene

    1. Characterization of a cancer/testis (CT) antigen gene family capable of eliciting humoral response in cancer patients. (PMID: 17114284) Parmigiani R.B. … Camargo A.A. (Proc. Natl. Acad. Sci. U.S.A. 2006) 2 3
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
    3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 4
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
    5. A transcript finishing initiative for closing gaps in the human transcriptome. (PMID: 15197164) Sogayar M.C. … Zanette D.L. (Genome Res. 2004) 3

    Products for ANKRD30BL Gene

    • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
    • QIAGEN qRT-PCR Assays for microRNAs that regulate ANKRD30BL
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for ANKRD30BL
      • Block miRNA regulation of ANKRD30BL using miScript Target Protectors

      Sources for ANKRD30BL Gene

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