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Aliases for ANKRD20A8P Gene

Aliases for ANKRD20A8P Gene

  • Ankyrin Repeat Domain 20 Family, Member A8, Pseudogene 2 3
  • Ankyrin Repeat Domain 20B 2 3
  • ANKRD20B 3 4
  • Ankyrin Repeat Domain-Containing Protein 20A Pseudogene 4
  • Ankyrin Repeat Domain Protein 18A Pseudogene 3

External Ids for ANKRD20A8P Gene

Previous Symbols for ANKRD20A8P Gene

  • ANKRD20B

Summaries for ANKRD20A8P Gene

GeneCards Summary for ANKRD20A8P Gene

ANKRD20A8P (Ankyrin Repeat Domain 20 Family, Member A8, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD20A8P Gene

Genomics for ANKRD20A8P Gene

Genomic Location for ANKRD20A8P Gene

Start:
94,760,928 bp from pter
End:
94,857,282 bp from pter
Size:
96,355 bases
Orientation:
Minus strand

Genomic View for ANKRD20A8P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ANKRD20A8P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD20A8P Gene

No data available for Regulatory Elements for ANKRD20A8P Gene

Proteins for ANKRD20A8P Gene

  • Protein details for ANKRD20A8P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5CZ79-AN20B_HUMAN
    Recommended name:
    Ankyrin repeat domain-containing protein 20B
    Protein Accession:
    Q5CZ79
    Secondary Accessions:
    • A6NC18

    Protein attributes for ANKRD20A8P Gene

    Size:
    823 amino acids
    Molecular mass:
    93909 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAI56787.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for ANKRD20A8P Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ANKRD20A8P Gene

Proteomics data for ANKRD20A8P Gene at MOPED

Post-translational modifications for ANKRD20A8P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ANKRD20A8P Gene

Domains for ANKRD20A8P Gene

Protein Domains for ANKRD20A8P Gene

UniProtKB/Swiss-Prot:

AN20B_HUMAN
Similarity:
  • Contains 6 ANK repeats.:
    • Q5CZ79
genes like me logo Genes that share domains with ANKRD20A8P: view

No data available for Gene Families for ANKRD20A8P Gene

Function for ANKRD20A8P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ANKRD20A8P Gene

Localization for ANKRD20A8P Gene

No data available for Gene Ontology (GO) - Cellular Components for ANKRD20A8P Gene

Pathways for ANKRD20A8P Gene

SuperPathways for ANKRD20A8P Gene

No Data Available

Interacting Proteins for ANKRD20A8P Gene

Gene Ontology (GO) - Biological Process for ANKRD20A8P Gene

None

No data available for Pathways by source for ANKRD20A8P Gene

Transcripts for ANKRD20A8P Gene

mRNA/cDNA for ANKRD20A8P Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ANKRD20A8P Gene

Ankyrin repeat domain 20 family, member A8, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD20A8P Gene

No ASD Table

Relevant External Links for ANKRD20A8P Gene

GeneLoc Exon Structure for
ANKRD20A8P
ECgene alternative splicing isoforms for
ANKRD20A8P

Expression for ANKRD20A8P Gene

mRNA expression in normal human tissues for ANKRD20A8P Gene

mRNA differential expression in normal tissues according to GTEx for ANKRD20A8P Gene

This gene is overexpressed in Testis (9.8), Thyroid (9.1), and Brain - Nucleus accumbens (basal ganglia) (4.2).

SOURCE GeneReport for Unigene cluster for ANKRD20A8P Gene Hs.456852

genes like me logo Genes that share expressions with ANKRD20A8P: view

Orthologs for ANKRD20A8P Gene

Evolution for ANKRD20A8P Gene

ENSEMBL:
Gene Tree for ANKRD20A8P (if available)
TreeFam:
Gene Tree for ANKRD20A8P (if available)

No data available for Orthologs for ANKRD20A8P Gene

Paralogs for ANKRD20A8P Gene

Selected SIMAP similar genes for ANKRD20A8P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ANKRD20A8P: view

No data available for Paralogs for ANKRD20A8P Gene

Variants for ANKRD20A8P Gene

Sequence variations from dbSNP and Humsavar for ANKRD20A8P Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs749308 -- 94,858,009(-) AGCCG(C/T)TGTTT upstream-variant-2KB
rs1809634 -- 94,842,345(-) TTTTG(A/G/T)CTTTT intron-variant
rs1809635 -- 94,841,629(-) CATGA(A/G)CCACT intron-variant
rs1809637 -- 94,856,411(+) aatcc(A/C)agcta intron-variant
rs1809638 -- 94,856,437(+) TTGGA(A/G)AATTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ANKRD20A8P Gene

Variant ID Type Subtype PubMed ID
essv23304 CNV CNV 17122850
dgv1227e1 CNV Complex 17122850
esv24702 CNV Gain 19812545
nsv10088 CNV Gain+Loss 18304495
esv2659810 CNV Deletion 23128226
esv2671209 CNV Deletion 23128226
esv2662784 CNV Deletion 23128226
esv1002390 CNV Insertion 20482838
nsv511795 CNV Loss 21212237

Relevant External Links for ANKRD20A8P Gene

HapMap Linkage Disequilibrium report
ANKRD20A8P

Disorders for ANKRD20A8P Gene

No disorders were found for ANKRD20A8P Gene.

No data available for UniProtKB/Swiss-Prot for ANKRD20A8P Gene

Publications for ANKRD20A8P Gene

  1. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 4
  2. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4

Products for ANKRD20A8P Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate ANKRD20A8P
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for ANKRD20A8P
    • Block miRNA regulation of ANKRD20A8P using miScript Target Protectors

    Sources for ANKRD20A8P Gene

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