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Aliases for ANKRD20A5P Gene

Aliases for ANKRD20A5P Gene

  • Ankyrin Repeat Domain 20 Family Member A5, Pseudogene 2 3 5
  • ANKRD20A5 3 4
  • Putative Ankyrin Repeat Domain-Containing Protein 20A-Like Protein MGC26718 3
  • Ankyrin Repeat Domain-Containing Protein 20A-Like Protein MGC26718 3
  • Ankyrin Repeat Domain-Containing Protein 20A5 Pseudogene 4
  • Ankyrin Repeat Domain 20 Family, Member A5, Pseudogene 2
  • Putative Ankyrin Repeat Domain-Containing Protein 20A5 3
  • Ankyrin Repeat Domain 20 Family, Member A4 Pseudogene 3
  • Ankyrin Repeat Domain 20 Family, Member A5 2

External Ids for ANKRD20A5P Gene

Previous HGNC Symbols for ANKRD20A5P Gene

  • ANKRD20A5

Previous GeneCards Identifiers for ANKRD20A5P Gene

  • GC18U900665

Summaries for ANKRD20A5P Gene

GeneCards Summary for ANKRD20A5P Gene

ANKRD20A5P (Ankyrin Repeat Domain 20 Family Member A5, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD20A5P Gene

Genomics for ANKRD20A5P Gene

Regulatory Elements for ANKRD20A5P Gene

Enhancers for ANKRD20A5P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around ANKRD20A5P on UCSC Golden Path with GeneCards custom track

Promoters for ANKRD20A5P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around ANKRD20A5P on UCSC Golden Path with GeneCards custom track

Genomic Location for ANKRD20A5P Gene

Chromosome:
18
Start:
14,179,097 bp from pter
End:
14,252,140 bp from pter
Size:
73,044 bases
Orientation:
Plus strand

Genomic View for ANKRD20A5P Gene

Genes around ANKRD20A5P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ANKRD20A5P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANKRD20A5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD20A5P Gene

Proteins for ANKRD20A5P Gene

  • Protein details for ANKRD20A5P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0PJZ0-A20A5_HUMAN
    Recommended name:
    Putative ankyrin repeat domain-containing protein 20A5
    Protein Accession:
    A0PJZ0
    Secondary Accessions:
    • Q4G1B6

    Protein attributes for ANKRD20A5P Gene

    Size:
    165 amino acids
    Molecular mass:
    18446 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH22023.1; Type=Frameshift; Positions=44; Evidence={ECO:0000305};

neXtProt entry for ANKRD20A5P Gene

Post-translational modifications for ANKRD20A5P Gene

No Post-translational modifications

No data available for DME Specific Peptides for ANKRD20A5P Gene

Domains & Families for ANKRD20A5P Gene

Protein Domains for ANKRD20A5P Gene

Suggested Antigen Peptide Sequences for ANKRD20A5P Gene

Graphical View of Domain Structure for InterPro Entry

A0PJZ0

UniProtKB/Swiss-Prot:

A20A5_HUMAN :
  • Contains 3 ANK repeats.
Similarity:
  • Contains 3 ANK repeats.
genes like me logo Genes that share domains with ANKRD20A5P: view

No data available for Gene Families for ANKRD20A5P Gene

Function for ANKRD20A5P Gene

Phenotypes for ANKRD20A5P Gene

GenomeRNAi human phenotypes for ANKRD20A5P:
genes like me logo Genes that share phenotypes with ANKRD20A5P: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKRD20A5P Gene

Localization for ANKRD20A5P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ANKRD20A5P Gene

Pathways & Interactions for ANKRD20A5P Gene

SuperPathways for ANKRD20A5P Gene

No Data Available

Interacting Proteins for ANKRD20A5P Gene

Gene Ontology (GO) - Biological Process for ANKRD20A5P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ANKRD20A5P Gene

Drugs & Compounds for ANKRD20A5P Gene

No Compound Related Data Available

Transcripts for ANKRD20A5P Gene

mRNA/cDNA for ANKRD20A5P Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(11) Selected AceView cDNA sequences:
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ANKRD20A5P Gene

Ankyrin repeat domain 20 family, member A5, pseudogene:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD20A5P Gene

No ASD Table

Relevant External Links for ANKRD20A5P Gene

GeneLoc Exon Structure for
ANKRD20A5P
ECgene alternative splicing isoforms for
ANKRD20A5P

Expression for ANKRD20A5P Gene

mRNA expression in normal human tissues for ANKRD20A5P Gene

mRNA differential expression in normal tissues according to GTEx for ANKRD20A5P Gene

This gene is overexpressed in Esophagus - Mucosa (x12.2) and Testis (x7.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ANKRD20A5P Gene



NURSA nuclear receptor signaling pathways regulating expression of ANKRD20A5P Gene:

ANKRD20A5P

SOURCE GeneReport for Unigene cluster for ANKRD20A5P Gene:

Hs.632352
genes like me logo Genes that share expression patterns with ANKRD20A5P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ANKRD20A5P Gene

Orthologs for ANKRD20A5P Gene

Evolution for ANKRD20A5P Gene

ENSEMBL:
Gene Tree for ANKRD20A5P (if available)
TreeFam:
Gene Tree for ANKRD20A5P (if available)

No data available for Orthologs for ANKRD20A5P Gene

Paralogs for ANKRD20A5P Gene

genes like me logo Genes that share paralogs with ANKRD20A5P: view

No data available for Paralogs for ANKRD20A5P Gene

Variants for ANKRD20A5P Gene

Sequence variations from dbSNP and Humsavar for ANKRD20A5P Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs2660983 -- 14,224,993(+) aagtg(A/G)ggagc intron-variant
rs2846947 -- 14,225,005(+) cctct(A/G)cccag intron-variant
rs2846948 -- 14,225,036(+) ggagc(A/G)tctct intron-variant
rs2846949 -- 14,225,046(+) tgccc(A/G)gccac intron-variant
rs2846976 -- 14,216,966(+) ATACA(A/G)TGGGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ANKRD20A5P Gene

Variant ID Type Subtype PubMed ID
dgv129n111 CNV deletion 26073780
dgv1854e59 CNV duplication 20981092
dgv3321n100 CNV loss 25217958
dgv3322n100 CNV loss 25217958
dgv39n82 CNV duplication 23825009
esv2758715 CNV gain 17122850
esv2760500 CNV loss 21179565
esv3555095 CNV deletion 23714750
esv3641872 CNV loss 21293372
esv3641874 CNV loss 21293372
esv3641875 CNV loss 21293372
esv3893076 CNV gain+loss 25118596
nsv1066142 CNV loss 25217958
nsv1078420 CNV duplication 25765185
nsv1132459 CNV duplication 24896259
nsv1149465 CNV deletion 26484159
nsv1153345 CNV duplication 26484159
nsv1160510 CNV duplication 26073780
nsv520945 CNV loss 19592680
nsv525471 CNV gain 19592680
nsv576531 CNV gain 21841781
nsv576532 CNV gain 21841781
nsv952416 CNV duplication 24416366
nsv960657 CNV duplication 23825009
nsv960665 CNV duplication 23825009
nsv960666 CNV duplication 23825009
nsv960667 CNV duplication 23825009
nsv960668 CNV duplication 23825009
nsv960670 CNV duplication 23825009
nsv961069 CNV duplication 23825009
nsv9612 CNV gain 18304495
nsv962893 CNV duplication 23825009
nsv962894 CNV duplication 23825009
nsv962895 CNV duplication 23825009
nsv978644 CNV duplication 23825009
nsv978645 CNV duplication 23825009
nsv978646 CNV duplication 23825009
nsv978647 CNV duplication 23825009

Relevant External Links for ANKRD20A5P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANKRD20A5P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ANKRD20A5P Gene

Disorders for ANKRD20A5P Gene

Relevant External Links for ANKRD20A5P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ANKRD20A5P

No disorders were found for ANKRD20A5P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD20A5P Gene

Publications for ANKRD20A5P Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 65
  2. DNA sequence and analysis of human chromosome 18. (PMID: 16177791) Nusbaum C. … Lander E.S. (Nature 2005) 4 65
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 65
  4. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y. … Sugano S. (Genome Res. 2004) 3 65
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 65

Products for ANKRD20A5P Gene

Sources for ANKRD20A5P Gene

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