ANKRD20A5P Gene
pseudogene GIFtS: 32
GCID: GC18P014179
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ankyrin repeat domain 20 family, member A5, pseudogene(Previous names: ankyrin repeat domain 20 family, member A5 )
(Previous symbol: ANKRD20A5)
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Aliases
for ANKRD20A5P gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA
Quality score for the ORGUL clustered with this gene is 3
| Aliases |
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| Ankyrin Repeat Domain 20 Family, Member A5, Pseudogene1 2 | | ANKRD20A51 2 3 | | MGC267181 | | Ankyrin Repeat Domain 20 Family, Member A51 | | Ankyrin Repeat Domain-Containing Protein 20A5 Pseudogene3 |
| External Ids: | HGNC: 338331 | Entrez Gene: 4404822 | Ensembl: ENSG000001864817 | UniProtKB: A0PJZ03 | | ORGUL members: | |
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| NONCODE:n411650 n346484 | |
Export aliases for ANKRD20A5P gene to outside databasesPrevious GC identifer: GC18U900665
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Summaries
for ANKRD20A5P gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for ANKRD20A5P gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000018.9 NC_018929.1 NT_010859.14
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for ANKRD20A5P
Other transcription factors
Search SABiosciences Chromatin IP Primers for ANKRD20A5P
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ANKRD20A5P |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 18p11.21 Ensembl cytogenetic band: 18p11.21 HGNC cytogenetic band: 18p11.21ANKRD20A5P Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 18 GeneLoc Exon Structure GeneLoc location for GC18P014179: view genomic region
(about GC identifiers)
Start:
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14,179,096 bp from pter |
End:
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14,249,455 bp from pter |
Size:
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70,360 bases |
Orientation:
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plus strand |
ORGUL member locations:
Legend (see complete legend)
14179095 14203072 14227049 chr18
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Proteins
for ANKRD20A5P gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
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UniProtKB/Swiss-Prot: A20A5_HUMAN, A0PJZ0 (See
protein sequence)Recommended Name: Putative ankyrin repeat domain-containing protein 20A5 Size: 165 amino acids; 18446 Da
Caution: Could be the product of a pseudogene
Sequence caution: Sequence=AAH22023.1; Type=Frameshift; Positions=44;
Secondary accessions: Q4G1B6Explore the universe of human proteins at neXtProt for ANKRD20A5P: NX_A0PJZ0
ANKRD20A5P Protein expression data from MOPED and PaxDb: --
Human Recombinant Protein Products:
ANKRD20A5P Antibody Products:
Assay Products for ANKRD20A5P: |
Protein
Domains /
Families
for ANKRD20A5P gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
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ANKRD20A5P for domains About GeneDecksing
2 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry A0PJZ0ProtoNet protein and cluster: A0PJZ0 UniProtKB/Swiss-Prot: A20A5_HUMAN, A0PJZ0Similarity: Contains 3 ANK repeats |
Function
for ANKRD20A5P gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ANKRD20A5P
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ANKRD20A5P
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript Custom all cDNA clones Services for ANKRD20A5P | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ANKRD20A5P | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ANKRD20A5P |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ANKRD20A5P |
|
Pathways & Interactions
for ANKRD20A5P gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ANKRD20A5P
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Drugs & Compounds
for ANKRD20A5P gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for ANKRD20A5P
Search CenterWatch for drugs/clinical trials and news about ANKRD20A5P
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Transcripts
for ANKRD20A5P gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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REFSEQ mRNAs for ANKRD20A5P gene: NM_001029999.3 Unigene Cluster for ANKRD20A5P: Ankyrin repeat domain 20 family, member A5, pseudogene Hs.632352 [show with all ESTs]Unigene Representative Sequence: NR_04011310 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000581935(uc010xag.2) ENST00000581181(uc002ksv.2) ENST00000581363
ENST00000431648(uc002ksw.2) ENST00000580195 ENST00000580995 ENST00000583348
ENST00000577614 ENST00000399814 ENST00000427989
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ANKRD20A5P
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ANKRD20A5P
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript Custom all cDNA clones Services for ANKRD20A5P | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ANKRD20A5P | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ANKRD20A5P |
Additional cDNA sequence: AK092114.1 BC033835.1 NR_040113.1 8 DOTS entries: DT.101955624 DT.70103298 DT.91897325 DT.438120 DT.92377167 DT.91948376 DT.121096455 DT.99995302 11 AceView cDNA sequences: BQ007619 BQ774800 CA422696 BC022023 BG720199 AX747360 AK092114 BF793603 BC033835 BG290526 AA368673
GeneLoc Exon Structure
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Expression
for ANKRD20A5P gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| ANKRD20A5P expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
SOURCE GeneReport for Unigene cluster: Hs.632352
SABiosciences Custom PCR Arrays for ANKRD20A5P
Primer
Products: | | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat ANKRD20A5P | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ANKRD20A5P | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ANKRD20A5P | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ANKRD20A5P |
Orthologs
for ANKRD20A5P gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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--
ENSEMBL Gene Tree for ANKRD20A5P (if available)
TreeFam Gene Tree for ANKRD20A5P (if available) |
Paralogs
for ANKRD20A5P gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for ANKRD20A5P gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
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| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 18 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for ANKRD20A5P (14179096 - 14249455 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for ANKRD20A5P: -- | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for ANKRD20A5P gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for ANKRD20A5P gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for ANKRD20A5P gene integrated from 9 sources:
(articles sorted by number of sources associating them with ANKRD20A5P) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- DNA sequence and analysis of human chromosome 18. (PubMed id 16177791)2 Nusbaum C.... Lander E.S. (2005)
- Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PubMed id 15342556)1 Suzuki Y.... Sugano S. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
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External Searches for ANKRD20A5P gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing ANKRD20A5P gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
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Other Databases showing ANKRD20A5P gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ANKRD20A5P gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for ANKRD20A5P | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for ANKRD20A5P gene:
Search GeneIP for patents involving ANKRD20A5P
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for ANKRD20A5P gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for ANKRD20A5P | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ANKRD20A5P | | Browse OriGene genome-wide validated SYBR primer pairs | | | OriGene Protein Over-expression Lysate for ANKRD20A5P | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for ANKRD20A5P | | Browse 3'-UTR reporter clones for miRNA target validation | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ANKRD20A5P | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ANKRD20A5P | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for ANKRD20A5P | | OriGene Custom Protein Services for ANKRD20A5P | | | OriGene Custom Immunoassay Development | | |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ANKRD20A5P | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ANKRD20A5P | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ANKRD20A5P | | | Search QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ANKRD20A5P | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ANKRD20A5P | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ANKRD20A5P |
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 | | | ANKRD20A5P Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ANKRD20A5P |
|  |  |  | | | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ANKRD20A5P |
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