Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ANKRD20A5P Gene

Aliases for ANKRD20A5P Gene

  • Ankyrin Repeat Domain 20 Family, Member A5, Pseudogene 2 3
  • ANKRD20A5 3 4
  • Putative Ankyrin Repeat Domain-Containing Protein 20A-Like Protein MGC26718 3
  • Ankyrin Repeat Domain-Containing Protein 20A-Like Protein MGC26718 3
  • Ankyrin Repeat Domain-Containing Protein 20A5 Pseudogene 4
  • Putative Ankyrin Repeat Domain-Containing Protein 20A5 3
  • Ankyrin Repeat Domain 20 Family, Member A4 Pseudogene 3
  • Ankyrin Repeat Domain 20 Family, Member A5 2

External Ids for ANKRD20A5P Gene

Previous HGNC Symbols for ANKRD20A5P Gene

  • ANKRD20A5

Previous GeneCards Identifiers for ANKRD20A5P Gene

  • GC18U900665

Summaries for ANKRD20A5P Gene

GeneCards Summary for ANKRD20A5P Gene

ANKRD20A5P (Ankyrin Repeat Domain 20 Family, Member A5, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD20A5P Gene

Genomics for ANKRD20A5P Gene

Genomic Location for ANKRD20A5P Gene

Start:
14,179,097 bp from pter
End:
14,234,797 bp from pter
Size:
55,701 bases
Orientation:
Plus strand

Genomic View for ANKRD20A5P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ANKRD20A5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD20A5P Gene

No data available for Regulatory Elements for ANKRD20A5P Gene

Proteins for ANKRD20A5P Gene

  • Protein details for ANKRD20A5P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0PJZ0-A20A5_HUMAN
    Recommended name:
    Putative ankyrin repeat domain-containing protein 20A5
    Protein Accession:
    A0PJZ0
    Secondary Accessions:
    • Q4G1B6

    Protein attributes for ANKRD20A5P Gene

    Size:
    165 amino acids
    Molecular mass:
    18446 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH22023.1; Type=Frameshift; Positions=44; Evidence={ECO:0000305};

neXtProt entry for ANKRD20A5P Gene

Proteomics data for ANKRD20A5P Gene at MOPED

Post-translational modifications for ANKRD20A5P Gene

No Post-translational modifications

No data available for DME Specific Peptides for ANKRD20A5P Gene

Domains for ANKRD20A5P Gene

Protein Domains for ANKRD20A5P Gene

Suggested Antigen Peptide Sequences for ANKRD20A5P Gene

Graphical View of Domain Structure for InterPro Entry

A0PJZ0

UniProtKB/Swiss-Prot:

A20A5_HUMAN :
  • Contains 3 ANK repeats.
Similarity:
  • Contains 3 ANK repeats.
genes like me logo Genes that share domains with ANKRD20A5P: view

No data available for Gene Families for ANKRD20A5P Gene

Function for ANKRD20A5P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKRD20A5P Gene

Localization for ANKRD20A5P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ANKRD20A5P Gene

Pathways for ANKRD20A5P Gene

SuperPathways for ANKRD20A5P Gene

No Data Available

Interacting Proteins for ANKRD20A5P Gene

Gene Ontology (GO) - Biological Process for ANKRD20A5P Gene

None

No data available for Pathways by source for ANKRD20A5P Gene

Transcripts for ANKRD20A5P Gene

mRNA/cDNA for ANKRD20A5P Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(11) Selected AceView cDNA sequences:
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ANKRD20A5P Gene

Ankyrin repeat domain 20 family, member A5, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD20A5P Gene

No ASD Table

Relevant External Links for ANKRD20A5P Gene

GeneLoc Exon Structure for
ANKRD20A5P
ECgene alternative splicing isoforms for
ANKRD20A5P

Expression for ANKRD20A5P Gene

mRNA expression in normal human tissues for ANKRD20A5P Gene

mRNA differential expression in normal tissues according to GTEx for ANKRD20A5P Gene

This gene is overexpressed in Esophagus - Mucosa (12.2) and Testis (7.6).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for ANKRD20A5P Gene

SOURCE GeneReport for Unigene cluster for ANKRD20A5P Gene Hs.632352

genes like me logo Genes that share expressions with ANKRD20A5P: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Expression partners for ANKRD20A5P Gene

Orthologs for ANKRD20A5P Gene

Evolution for ANKRD20A5P Gene

ENSEMBL:
Gene Tree for ANKRD20A5P (if available)
TreeFam:
Gene Tree for ANKRD20A5P (if available)

No data available for Orthologs for ANKRD20A5P Gene

Paralogs for ANKRD20A5P Gene

genes like me logo Genes that share paralogs with ANKRD20A5P: view

No data available for Paralogs for ANKRD20A5P Gene

Variants for ANKRD20A5P Gene

Sequence variations from dbSNP and Humsavar for ANKRD20A5P Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type MAF
rs1444 -- 14,226,258(-) CCTTC(A/G)CAAAC nc-transcript-variant
rs10912 -- 14,226,634(+) TTTAT(A/G)TTGCC nc-transcript-variant
rs15697 -- 14,226,461(-) TTTTC(C/T)TTTTT nc-transcript-variant
rs438774 -- 14,182,328(-) CCTAT(A/T)TTAAA intron-variant
rs472522 -- 14,214,564(-) AGAGC(A/C)AGATA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ANKRD20A5P Gene

Variant ID Type Subtype PubMed ID
nsv909415 CNV Gain 21882294
dgv1013e1 CNV Complex 17122850
nsv909416 CNV Gain 21882294
nsv520945 CNV Loss 19592680
essv3388 CNV CNV 17122850
nsv525471 CNV Gain 19592680
nsv909418 CNV Gain 21882294
nsv909419 CNV Loss 21882294
dgv3389n71 CNV Gain 21882294
nsv909421 CNV Gain 21882294
dgv3390n71 CNV Gain 21882294
nsv9612 CNV Gain 18304495
essv21603 CNV CNV 17122850
nsv909425 CNV Gain 21882294

Relevant External Links for ANKRD20A5P Gene

HapMap Linkage Disequilibrium report
ANKRD20A5P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ANKRD20A5P Gene

Disorders for ANKRD20A5P Gene

No disorders were found for ANKRD20A5P Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for ANKRD20A5P Gene

Publications for ANKRD20A5P Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. DNA sequence and analysis of human chromosome 18. (PMID: 16177791) Nusbaum C. … Lander E.S. (Nature 2005) 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y. … Sugano S. (Genome Res. 2004) 3

Products for ANKRD20A5P Gene

Sources for ANKRD20A5P Gene

Back to Top

Content