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Aliases for ANKRD20A4 Gene

Aliases for ANKRD20A4 Gene

  • Ankyrin Repeat Domain 20 Family, Member A4 2 3

External Ids for ANKRD20A4 Gene

Previous GeneCards Identifiers for ANKRD20A4 Gene

  • GC09U900751
  • GC09P068672
  • GC09P069381
  • GC09M039336

Summaries for ANKRD20A4 Gene

GeneCards Summary for ANKRD20A4 Gene

ANKRD20A4 (Ankyrin Repeat Domain 20 Family, Member A4) is a Protein Coding gene. An important paralog of this gene is POTEJ.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD20A4 Gene

Genomics for ANKRD20A4 Gene

Regulatory Elements for ANKRD20A4 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ANKRD20A4 Gene

Chromosome:
9
Start:
64,369,394 bp from pter
End:
64,413,142 bp from pter
Size:
43,749 bases
Orientation:
Plus strand

Genomic View for ANKRD20A4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ANKRD20A4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD20A4 Gene

Proteins for ANKRD20A4 Gene

  • Protein details for ANKRD20A4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q4UJ75-A20A4_HUMAN
    Recommended name:
    Ankyrin repeat domain-containing protein 20A4
    Protein Accession:
    Q4UJ75

    Protein attributes for ANKRD20A4 Gene

    Size:
    823 amino acids
    Molecular mass:
    94149 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ANKRD20A4 Gene

Proteomics data for ANKRD20A4 Gene at MOPED

Post-translational modifications for ANKRD20A4 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ANKRD20A4 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ANKRD20A4 Gene

Domains & Families for ANKRD20A4 Gene

Gene Families for ANKRD20A4 Gene

Protein Domains for ANKRD20A4 Gene

Suggested Antigen Peptide Sequences for ANKRD20A4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q4UJ75

UniProtKB/Swiss-Prot:

A20A4_HUMAN :
  • Contains 5 ANK repeats.
Similarity:
  • Contains 5 ANK repeats.
genes like me logo Genes that share domains with ANKRD20A4: view

Function for ANKRD20A4 Gene

Gene Ontology (GO) - Molecular Function for ANKRD20A4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with ANKRD20A4: view

Animal Model Products

CRISPR Products

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate ANKRD20A4
    • Block miRNA regulation of ANKRD20A4 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for ANKRD20A4

    In Situ Assay Products

    Flow Cytometry Products

    No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKRD20A4 Gene

    Localization for ANKRD20A4 Gene

    No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ANKRD20A4 Gene

    Pathways & Interactions for ANKRD20A4 Gene

    SuperPathways for ANKRD20A4 Gene

    No Data Available

    Interacting Proteins for ANKRD20A4 Gene

    Gene Ontology (GO) - Biological Process for ANKRD20A4 Gene

    None

    No data available for Pathways by source and SIGNOR curated interactions for ANKRD20A4 Gene

    Drugs & Compounds for ANKRD20A4 Gene

    No Compound Related Data Available

    Transcripts for ANKRD20A4 Gene

    mRNA/cDNA for ANKRD20A4 Gene

    (1) REFSEQ mRNAs :
    (1) Additional mRNA sequences :
    (3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

    Unigene Clusters for ANKRD20A4 Gene

    Ankyrin repeat domain 20 family, member A4:
    Representative Sequences:

    CRISPR Products

    miRNA Products

    • QIAGEN qRT-PCR Assays for microRNAs that regulate ANKRD20A4
      • Block miRNA regulation of ANKRD20A4 using miScript Target Protectors

      Inhibitory RNA Products

      • Predesigned siRNA for gene silencing in human,mouse,rat for ANKRD20A4

      Flow Cytometry Products

      Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD20A4 Gene

      No ASD Table

      Relevant External Links for ANKRD20A4 Gene

      GeneLoc Exon Structure for
      ANKRD20A4
      ECgene alternative splicing isoforms for
      ANKRD20A4

      Expression for ANKRD20A4 Gene

      mRNA expression in normal human tissues for ANKRD20A4 Gene

      mRNA differential expression in normal tissues according to GTEx for ANKRD20A4 Gene

      This gene is overexpressed in Testis (x4.3).

      Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for ANKRD20A4 Gene



      SOURCE GeneReport for Unigene cluster for ANKRD20A4 Gene Hs.645502

      genes like me logo Genes that share expression patterns with ANKRD20A4: view

      Primer Products

      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat

      In Situ Assay Products

      No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for ANKRD20A4 Gene

      Orthologs for ANKRD20A4 Gene

      This gene was present in the common ancestor of chordates.

      Orthologs for ANKRD20A4 Gene

      Organism Taxonomy Gene Similarity Type Details
      chimpanzee
      (Pan troglodytes)
      Mammalia LOC738297 35
      • 98.5 (n)
      • 96.72 (a)
      -- 36
      • 97 (a)
      OneToMany
      cow
      (Bos Taurus)
      Mammalia -- 36
      • 33 (a)
      OneToMany
      dog
      (Canis familiaris)
      Mammalia -- 36
      • 14 (a)
      ManyToMany
      -- 36
      • 41 (a)
      ManyToMany
      -- 36
      • 16 (a)
      ManyToMany
      -- 36
      • 15 (a)
      ManyToMany
      -- 36
      • 16 (a)
      ManyToMany
      -- 36
      • 29 (a)
      ManyToMany
      -- 36
      • 39 (a)
      ManyToMany
      -- 36
      • 42 (a)
      ManyToMany
      mouse
      (Mus musculus)
      Mammalia Gm1758 36
      • 36 (a)
      ManyToMany
      platypus
      (Ornithorhynchus anatinus)
      Mammalia -- 36
      • 11 (a)
      OneToMany
      chicken
      (Gallus gallus)
      Aves -- 36
      • 18 (a)
      OneToMany
      lizard
      (Anolis carolinensis)
      Reptilia -- 36
      • 41 (a)
      ManyToMany
      zebrafish
      (Danio rerio)
      Actinopterygii ANKRD7 36
      • 9 (a)
      OneToMany
      Species with no ortholog for ANKRD20A4:
      • A. gosspyii yeast (Ashbya gossypii)
      • Actinobacteria (Mycobacterium tuberculosis)
      • African clawed frog (Xenopus laevis)
      • African malaria mosquito (Anopheles gambiae)
      • Alicante grape (Vitis vinifera)
      • alpha proteobacteria (Wolbachia pipientis)
      • amoeba (Dictyostelium discoideum)
      • Archea (Pyrococcus horikoshii)
      • baker's yeast (Saccharomyces cerevisiae)
      • barley (Hordeum vulgare)
      • beta proteobacteria (Neisseria meningitidis)
      • bread mold (Neurospora crassa)
      • Chromalveolata (Phytophthora infestans)
      • common water flea (Daphnia pulex)
      • corn (Zea mays)
      • E. coli (Escherichia coli)
      • filamentous fungi (Aspergillus nidulans)
      • Firmicute bacteria (Streptococcus pneumoniae)
      • fission yeast (Schizosaccharomyces pombe)
      • fruit fly (Drosophila melanogaster)
      • green algae (Chlamydomonas reinhardtii)
      • honey bee (Apis mellifera)
      • K. lactis yeast (Kluyveromyces lactis)
      • loblloly pine (Pinus taeda)
      • malaria parasite (Plasmodium falciparum)
      • medicago trunc (Medicago Truncatula)
      • moss (Physcomitrella patens)
      • oppossum (Monodelphis domestica)
      • orangutan (Pongo pygmaeus)
      • pig (Sus scrofa)
      • rainbow trout (Oncorhynchus mykiss)
      • rat (Rattus norvegicus)
      • rice (Oryza sativa)
      • rice blast fungus (Magnaporthe grisea)
      • schistosome parasite (Schistosoma mansoni)
      • sea anemone (Nematostella vectensis)
      • sea squirt (Ciona intestinalis)
      • sea squirt (Ciona savignyi)
      • sea urchin (Strongylocentrotus purpuratus)
      • sorghum (Sorghum bicolor)
      • soybean (Glycine max)
      • stem rust fungus (Puccinia graminis)
      • sugarcane (Saccharum officinarum)
      • thale cress (Arabidopsis thaliana)
      • tomato (Lycopersicon esculentum)
      • toxoplasmosis (Toxoplasma gondii)
      • Trichoplax (Trichoplax adhaerens)
      • tropical clawed frog (Silurana tropicalis)
      • wheat (Triticum aestivum)
      • worm (Caenorhabditis elegans)

      Evolution for ANKRD20A4 Gene

      ENSEMBL:
      Gene Tree for ANKRD20A4 (if available)
      TreeFam:
      Gene Tree for ANKRD20A4 (if available)

      Paralogs for ANKRD20A4 Gene

      Pseudogenes.org Pseudogenes for ANKRD20A4 Gene

      genes like me logo Genes that share paralogs with ANKRD20A4: view

      Variants for ANKRD20A4 Gene

      Sequence variations from dbSNP and Humsavar for ANKRD20A4 Gene

      SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
      rs1818378 -- 64,404,379(+) TGGGA(C/T)CTTTG intron-variant
      rs1852295 -- 64,412,286(+) TTTAT(A/G)TTGCC utr-variant-3-prime
      rs1858130 -- 64,398,017(+) CAAAG(A/C)AGTGA intron-variant
      rs1912056 -- 64,402,742(+) GTCTA(A/G)CAGCA intron-variant
      rs1912069 -- 64,396,928(+) GGGGA(C/T)AGGAG intron-variant

      Structural Variations from Database of Genomic Variants (DGV) for ANKRD20A4 Gene

      Variant ID Type Subtype PubMed ID
      dgv2381e1 CNV Complex 17122850
      dgv135n16 CNV Deletion 17901297
      esv33449 CNV Loss 17666407
      essv17250 CNV CNV 17122850
      nsv893398 CNV Loss 21882294

      Variation tolerance for ANKRD20A4 Gene

      Gene Damage Index Score: 3.66; 56.93% of all genes are more intolerant (likely to be disease-causing)

      Relevant External Links for ANKRD20A4 Gene

      HapMap Linkage Disequilibrium report
      ANKRD20A4

      No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ANKRD20A4 Gene

      Disorders for ANKRD20A4 Gene

      Relevant External Links for ANKRD20A4

      Atlas of Genetics and Cytogenetics in Oncology and Haematology:
      ANKRD20A4
      genes like me logo Genes that share disorders with ANKRD20A4: view

      No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD20A4 Gene

      Publications for ANKRD20A4 Gene

      1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A. … Carmell M.A. (Nature 2006) 67
      2. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 67

      Products for ANKRD20A4 Gene

      • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
      • QIAGEN qRT-PCR Assays for microRNAs that regulate ANKRD20A4
        • QuantiTect SYBR Green Assays in human,mouse,rat
        • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
        • QuantiFast Probe-based Assays in human,mouse,rat
        • Predesigned siRNA for gene silencing in human,mouse,rat for ANKRD20A4
        • Block miRNA regulation of ANKRD20A4 using miScript Target Protectors

        Sources for ANKRD20A4 Gene

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