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Aliases for ANKRD20A4 Gene

Aliases for ANKRD20A4 Gene

  • Ankyrin Repeat Domain 20 Family, Member A4 2 3

External Ids for ANKRD20A4 Gene

Summaries for ANKRD20A4 Gene

GeneCards Summary for ANKRD20A4 Gene

ANKRD20A4 (Ankyrin Repeat Domain 20 Family, Member A4) is a Protein Coding gene. An important paralog of this gene is POTEJ.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD20A4 Gene

Genomics for ANKRD20A4 Gene

Genomic Location for ANKRD20A4 Gene

Start:
64,369,394 bp from pter
End:
64,413,142 bp from pter
Size:
43,749 bases
Orientation:
Plus strand

Genomic View for ANKRD20A4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ANKRD20A4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD20A4 Gene

Regulatory Elements for ANKRD20A4 Gene

Proteins for ANKRD20A4 Gene

  • Protein details for ANKRD20A4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q4UJ75-A20A4_HUMAN
    Recommended name:
    Ankyrin repeat domain-containing protein 20A4
    Protein Accession:
    Q4UJ75
    Secondary Accessions:

    Protein attributes for ANKRD20A4 Gene

    Size:
    823 amino acids
    Molecular mass:
    94149 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ANKRD20A4 Gene

Proteomics data for ANKRD20A4 Gene at MOPED

Post-translational modifications for ANKRD20A4 Gene

No Post-translational modifications

Other Protein References for ANKRD20A4 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ANKRD20A4 Gene

Domains for ANKRD20A4 Gene

Gene Families for ANKRD20A4 Gene

HGNC:
  • ANKRD :Ankyrin repeat domain containing

Protein Domains for ANKRD20A4 Gene

Suggested Antigen Peptide Sequences for ANKRD20A4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q4UJ75

UniProtKB/Swiss-Prot:

A20A4_HUMAN
Similarity:
  • Contains 5 ANK repeats.:
    • Q4UJ75
genes like me logo Genes that share domains with ANKRD20A4: view

Function for ANKRD20A4 Gene

Gene Ontology (GO) - Molecular Function for ANKRD20A4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with ANKRD20A4: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ANKRD20A4 Gene

Localization for ANKRD20A4 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ANKRD20A4 Gene COMPARTMENTS Subcellular localization image for ANKRD20A4 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ANKRD20A4 Gene

Pathways for ANKRD20A4 Gene

SuperPathways for ANKRD20A4 Gene

No Data Available

Interacting Proteins for ANKRD20A4 Gene

Gene Ontology (GO) - Biological Process for ANKRD20A4 Gene

None

No data available for Pathways by source for ANKRD20A4 Gene

Transcripts for ANKRD20A4 Gene

mRNA/cDNA for ANKRD20A4 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ANKRD20A4 Gene

Ankyrin repeat domain 20 family, member A4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD20A4 Gene

No ASD Table

Relevant External Links for ANKRD20A4 Gene

GeneLoc Exon Structure for
ANKRD20A4
ECgene alternative splicing isoforms for
ANKRD20A4

Expression for ANKRD20A4 Gene

mRNA expression in normal human tissues for ANKRD20A4 Gene

mRNA differential expression in normal tissues according to GTEx for ANKRD20A4 Gene

This gene is overexpressed in Testis (4.3).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ANKRD20A4 Gene

SOURCE GeneReport for Unigene cluster for ANKRD20A4 Gene Hs.645502

genes like me logo Genes that share expressions with ANKRD20A4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for ANKRD20A4 Gene

Orthologs for ANKRD20A4 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ANKRD20A4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 97 (a)
OneToMany
LOC738297 35
  • 98.5 (n)
  • 96.72 (a)
cow
(Bos Taurus)
Mammalia -- 36
  • 33 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 14 (a)
ManyToMany
-- 36
  • 41 (a)
ManyToMany
-- 36
  • 16 (a)
ManyToMany
-- 36
  • 15 (a)
ManyToMany
-- 36
  • 16 (a)
ManyToMany
-- 36
  • 29 (a)
ManyToMany
-- 36
  • 39 (a)
ManyToMany
-- 36
  • 42 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm1758 36
  • 36 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 11 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 36
  • 18 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 41 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii ANKRD7 36
  • 9 (a)
OneToMany
Species with no ortholog for ANKRD20A4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ANKRD20A4 Gene

ENSEMBL:
Gene Tree for ANKRD20A4 (if available)
TreeFam:
Gene Tree for ANKRD20A4 (if available)

Paralogs for ANKRD20A4 Gene

Pseudogenes.org Pseudogenes for ANKRD20A4 Gene

genes like me logo Genes that share paralogs with ANKRD20A4: view

Variants for ANKRD20A4 Gene

Sequence variations from dbSNP and Humsavar for ANKRD20A4 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs1818378 -- 64,404,379(+) TGGGA(C/T)CTTTG intron-variant
rs1844129 -- 64,402,764(+) CATGT(A/T)AAGAC intron-variant
rs1852295 -- 64,412,286(+) TTTAT(A/G)TTGCC utr-variant-3-prime
rs1858130 -- 64,398,017(+) CAAAG(A/C)AGTGA intron-variant
rs1912069 -- 64,396,928(+) GGGGA(C/T)AGGAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ANKRD20A4 Gene

Variant ID Type Subtype PubMed ID
dgv2381e1 CNV Complex 17122850
dgv135n16 CNV Deletion 17901297
esv33449 CNV Loss 17666407
essv17250 CNV CNV 17122850
nsv893398 CNV Loss 21882294

Relevant External Links for ANKRD20A4 Gene

HapMap Linkage Disequilibrium report
ANKRD20A4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ANKRD20A4 Gene

Disorders for ANKRD20A4 Gene

No disorders were found for ANKRD20A4 Gene.

No data available for UniProtKB/Swiss-Prot for ANKRD20A4 Gene

Publications for ANKRD20A4 Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
  2. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A. … Carmell M.A. (Nature 2006) 3

Products for ANKRD20A4 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate ANKRD20A4
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for ANKRD20A4
    • Block miRNA regulation of ANKRD20A4 using miScript Target Protectors

    Sources for ANKRD20A4 Gene

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