Aliases for ANKRD20A19P Gene
Aliases for ANKRD20A19P Gene
External Ids for ANKRD20A19P Gene
- HGNC: 42737
- Entrez Gene: 400110
- Ensembl: ENSG00000196593
Previous GeneCards Identifiers for ANKRD20A19P Gene
- GC13M024513
Summaries for ANKRD20A19P Gene
GeneCards Summary for ANKRD20A19P Gene
ANKRD20A19P (Ankyrin Repeat Domain 20 Family Member A19, Pseudogene) is a Pseudogene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD20A19P Gene
Genomics for ANKRD20A19P Gene
Regulatory Elements for ANKRD20A19P Gene
Enhancers for ANKRD20A19P Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH13G023955 | 0.6 | ENCODE | 17.8 | -7.0 | -6971 | 1.0 | MTA2 BHLHE40 WRNIP1 KLF17 FEZF1 TBX21 IKZF1 FOS | ANKRD20A19P C1QTNF9B LOC105370115 SPATA13 |
| GH13G023921 | 0.9 | Ensembl ENCODE | 9.8 | +27.3 | 27310 | 1.8 | CTCF ZNF654 TRIM22 DPF2 CHD7 RAD21 CTBP1 GATA2 SMC3 POU5F1 | C1QTNF9B ANKRD20A19P PIR57853 |
| GH13G023928 | 0.7 | ENCODE | 11.2 | +20.4 | 20356 | 1.0 | FOXA2 PKNOX1 SAP130 JUN FOXA3 DPF2 MNT FOSL1 JUND IKZF1 | C1QTNF9B ANKRD20A19P PIR57853 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around ANKRD20A19P on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for ANKRD20A19P Gene
- Chromosome:
- 13
- Start:
- 23,907,284 bp from pter
- End:
- 23,949,315 bp from pter
- Size:
- 42,032 bases
- Orientation:
- Minus strand
Genomic View for ANKRD20A19P Gene
Genes around ANKRD20A19P on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 13q12.12 by Ensembl
- 13q12.12 by Entrez Gene
- 13q12.12 by HGNC
ANKRD20A19P Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for ANKRD20A19P Gene
Proteins for ANKRD20A19P Gene
Post-translational modifications for ANKRD20A19P Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for ANKRD20A19P
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for ANKRD20A19P
- Origene Custom Protein Services for ANKRD20A19P
- Search GeneTex for Proteins for ANKRD20A19P
Assay Products
No data available for DME Specific Peptides for ANKRD20A19P Gene
Domains & Families for ANKRD20A19P Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ANKRD20A19P Gene
Function for ANKRD20A19P Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
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-
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CRISPR Products
- Browse CRISPR knockouts for ANKRD20A19P
miRNA Products
- Search ViGene Biosciences for ANKRD20A19P
Inhibitory RNA Products
- Origene shRNA and RNAi products in human, mouse, rat for ANKRD20A19P
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Clone Products
- GenScript: Custom all cDNA clones Services for ANKRD20A19P
- VectorBuilder custom plasmid, inducible vectors for ANKRD20A19P
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ANKRD20A19P
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
- Search ViGene Biosciences for ANKRD20A19P
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKRD20A19P Gene
Localization for ANKRD20A19P Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ANKRD20A19P Gene
Transcripts for ANKRD20A19P Gene
mRNA/cDNA for ANKRD20A19P Gene
- (1) REFSEQ mRNAs :
- (1) Additional mRNA sequences :
- (7) Selected AceView cDNA sequences:
- (3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for ANKRD20A19P Gene
CRISPR Products
- Browse CRISPR knockouts for ANKRD20A19P
miRNA Products
- Search ViGene Biosciences for ANKRD20A19P
Inhibitory RNA Products
- Origene shRNA and RNAi products in human, mouse, rat for ANKRD20A19P
- Browse OriGene Inhibitory RNA Products For ANKRD20A19P
- Search ViGene Biosciences for ANKRD20A19P
Clone Products
- GenScript: Custom all cDNA clones Services for ANKRD20A19P
- VectorBuilder custom plasmid, inducible vectors for ANKRD20A19P
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ANKRD20A19P
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Relevant External Links for ANKRD20A19P Gene
- GeneLoc Exon Structure for
- ANKRD20A19P
- ECgene alternative splicing isoforms for
- ANKRD20A19P
Expression for ANKRD20A19P Gene
mRNA differential expression in normal tissues according to GTEx for ANKRD20A19P Gene
This gene is overexpressed in Testis (x22.2) and Brain - Hippocampus (x8.3).
NURSA nuclear receptor signaling pathways regulating expression of ANKRD20A19P Gene:
ANKRD20A19PSOURCE GeneReport for Unigene cluster for ANKRD20A19P Gene:
Hs.744780
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKRD20A19P Gene
Orthologs for ANKRD20A19P Gene
Evolution for ANKRD20A19P Gene
- ENSEMBL:
- Gene Tree for ANKRD20A19P (if available)
- TreeFam:
- Gene Tree for ANKRD20A19P (if available)
No data available for Orthologs for ANKRD20A19P Gene
Paralogs for ANKRD20A19P Gene
No data available for Paralogs for ANKRD20A19P Gene
Variants for ANKRD20A19P Gene
| SNP ID | Clin | Chr 13 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000009849 | -- | 23,933,096(+) | TGGGA(C/T)AGGTG | intron-variant | |
| rs1000071531 | -- | 23,930,026(+) | ATAAT(C/T)CTTTT | intron-variant | |
| rs1000122001 | -- | 23,940,470(+) | AAATG(C/T)CCATG | intron-variant | |
| rs1000137330 | -- | 23,946,752(+) | GGAGC(C/T)CCCTC | nc-transcript-variant | |
| rs1000161053 | -- | 23,927,812(+) | TGTGG(A/G)TGGTT | intron-variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv1615n100 | CNV | gain | 25217958 |
| dgv3084n54 | CNV | gain | 21841781 |
| esv2422502 | CNV | duplication | 17116639 |
| esv2751136 | CNV | loss | 17911159 |
| esv3350181 | CNV | insertion | 20981092 |
| esv3580576 | CNV | loss | 25503493 |
| esv3631536 | CNV | gain | 21293372 |
| esv3631538 | CNV | loss | 21293372 |
| esv3892311 | CNV | gain | 25118596 |
| esv3892312 | CNV | loss | 25118596 |
| esv5325 | OTHER | complex | 18987735 |
| nsv1041095 | CNV | loss | 25217958 |
| nsv1078303 | OTHER | inversion | 25765185 |
| nsv1140246 | OTHER | inversion | 24896259 |
| nsv1151909 | OTHER | inversion | 26484159 |
| nsv455837 | CNV | gain | 19166990 |
| nsv518839 | CNV | loss | 19592680 |
| nsv518890 | CNV | loss | 19592680 |
| nsv523820 | CNV | loss | 19592680 |
| nsv525965 | CNV | gain | 19592680 |
| nsv561292 | CNV | loss | 21841781 |
| nsv561338 | CNV | gain | 21841781 |
| nsv832566 | CNV | gain | 17160897 |
| nsv952527 | CNV | deletion | 24416366 |
| nsv977211 | CNV | duplication | 23825009 |
Relevant External Links for ANKRD20A19P Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- ANKRD20A19P
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ANKRD20A19P Gene
Disorders for ANKRD20A19P Gene
Relevant External Links for ANKRD20A19P
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- ANKRD20A19P
No disorders were found for ANKRD20A19P Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD20A19P Gene
Publications for ANKRD20A19P Gene
- Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene. (PMID: 19851299) Johansson A. … Gyllensten U. (Obesity (Silver Spring) 2010) 3 64
Products for ANKRD20A19P Gene
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- Cyagen custom Knockout/knockin (KOKI) mouse models for ANKRD20A19P
- VectorBuilder custom plasmid, inducible vectors for ANKRD20A19P
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ANKRD20A19P
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for ANKRD20A19P Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
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- (122) diseasecard
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- (136) ViGene Biosciences
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- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer