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Aliases for ANKRD20A19P Gene

Aliases for ANKRD20A19P Gene

  • Ankyrin Repeat Domain 20 Family Member A19, Pseudogene 2 3 5
  • Ankyrin Repeat Domain 20 Family, Member A19, Pseudogene 2

External Ids for ANKRD20A19P Gene

Previous GeneCards Identifiers for ANKRD20A19P Gene

  • GC13M024513

Summaries for ANKRD20A19P Gene

GeneCards Summary for ANKRD20A19P Gene

ANKRD20A19P (Ankyrin Repeat Domain 20 Family Member A19, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD20A19P Gene

Genomics for ANKRD20A19P Gene

Regulatory Elements for ANKRD20A19P Gene

Enhancers for ANKRD20A19P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G023955 0.6 ENCODE 17.8 -7.0 -6971 1.0 MTA2 BHLHE40 WRNIP1 KLF17 FEZF1 TBX21 IKZF1 FOS ANKRD20A19P C1QTNF9B LOC105370115 SPATA13
GH13G023921 0.9 Ensembl ENCODE 9.8 +27.3 27310 1.8 CTCF ZNF654 TRIM22 DPF2 CHD7 RAD21 CTBP1 GATA2 SMC3 POU5F1 C1QTNF9B ANKRD20A19P PIR57853
GH13G023928 0.7 ENCODE 11.2 +20.4 20356 1.0 FOXA2 PKNOX1 SAP130 JUN FOXA3 DPF2 MNT FOSL1 JUND IKZF1 C1QTNF9B ANKRD20A19P PIR57853
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ANKRD20A19P on UCSC Golden Path with GeneCards custom track

Genomic Location for ANKRD20A19P Gene

Chromosome:
13
Start:
23,907,284 bp from pter
End:
23,949,315 bp from pter
Size:
42,032 bases
Orientation:
Minus strand

Genomic View for ANKRD20A19P Gene

Genes around ANKRD20A19P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ANKRD20A19P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANKRD20A19P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD20A19P Gene

Proteins for ANKRD20A19P Gene

Post-translational modifications for ANKRD20A19P Gene

No Post-translational modifications

No data available for DME Specific Peptides for ANKRD20A19P Gene

Domains & Families for ANKRD20A19P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ANKRD20A19P Gene

Function for ANKRD20A19P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKRD20A19P Gene

Localization for ANKRD20A19P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ANKRD20A19P Gene

Pathways & Interactions for ANKRD20A19P Gene

SuperPathways for ANKRD20A19P Gene

No Data Available

Interacting Proteins for ANKRD20A19P Gene

Gene Ontology (GO) - Biological Process for ANKRD20A19P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ANKRD20A19P Gene

Drugs & Compounds for ANKRD20A19P Gene

No Compound Related Data Available

Transcripts for ANKRD20A19P Gene

mRNA/cDNA for ANKRD20A19P Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ANKRD20A19P Gene

Ankyrin repeat domain 20 family, member A19, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD20A19P Gene

No ASD Table

Relevant External Links for ANKRD20A19P Gene

GeneLoc Exon Structure for
ANKRD20A19P
ECgene alternative splicing isoforms for
ANKRD20A19P

Expression for ANKRD20A19P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ANKRD20A19P Gene

mRNA differential expression in normal tissues according to GTEx for ANKRD20A19P Gene

This gene is overexpressed in Testis (x22.2) and Brain - Hippocampus (x8.3).

NURSA nuclear receptor signaling pathways regulating expression of ANKRD20A19P Gene:

ANKRD20A19P

SOURCE GeneReport for Unigene cluster for ANKRD20A19P Gene:

Hs.744780
genes like me logo Genes that share expression patterns with ANKRD20A19P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKRD20A19P Gene

Orthologs for ANKRD20A19P Gene

Evolution for ANKRD20A19P Gene

ENSEMBL:
Gene Tree for ANKRD20A19P (if available)
TreeFam:
Gene Tree for ANKRD20A19P (if available)

No data available for Orthologs for ANKRD20A19P Gene

Paralogs for ANKRD20A19P Gene

No data available for Paralogs for ANKRD20A19P Gene

Variants for ANKRD20A19P Gene

Sequence variations from dbSNP and Humsavar for ANKRD20A19P Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000009849 -- 23,933,096(+) TGGGA(C/T)AGGTG intron-variant
rs1000071531 -- 23,930,026(+) ATAAT(C/T)CTTTT intron-variant
rs1000122001 -- 23,940,470(+) AAATG(C/T)CCATG intron-variant
rs1000137330 -- 23,946,752(+) GGAGC(C/T)CCCTC nc-transcript-variant
rs1000161053 -- 23,927,812(+) TGTGG(A/G)TGGTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ANKRD20A19P Gene

Variant ID Type Subtype PubMed ID
dgv1615n100 CNV gain 25217958
dgv3084n54 CNV gain 21841781
esv2422502 CNV duplication 17116639
esv2751136 CNV loss 17911159
esv3350181 CNV insertion 20981092
esv3580576 CNV loss 25503493
esv3631536 CNV gain 21293372
esv3631538 CNV loss 21293372
esv3892311 CNV gain 25118596
esv3892312 CNV loss 25118596
esv5325 OTHER complex 18987735
nsv1041095 CNV loss 25217958
nsv1078303 OTHER inversion 25765185
nsv1140246 OTHER inversion 24896259
nsv1151909 OTHER inversion 26484159
nsv455837 CNV gain 19166990
nsv518839 CNV loss 19592680
nsv518890 CNV loss 19592680
nsv523820 CNV loss 19592680
nsv525965 CNV gain 19592680
nsv561292 CNV loss 21841781
nsv561338 CNV gain 21841781
nsv832566 CNV gain 17160897
nsv952527 CNV deletion 24416366
nsv977211 CNV duplication 23825009

Relevant External Links for ANKRD20A19P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANKRD20A19P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ANKRD20A19P Gene

Disorders for ANKRD20A19P Gene

Relevant External Links for ANKRD20A19P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ANKRD20A19P

No disorders were found for ANKRD20A19P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD20A19P Gene

Publications for ANKRD20A19P Gene

  1. Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene. (PMID: 19851299) Johansson A. … Gyllensten U. (Obesity (Silver Spring) 2010) 3 64

Products for ANKRD20A19P Gene

Sources for ANKRD20A19P Gene

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