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ANKRD20A12P Gene(Pseudogene)

Ankyrin Repeat Domain 20 Family Member A12, Pseudogene

GCID:
GC04M000161
GIFtS:
19
Genes Participants
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Aliases for ANKRD20A12P Gene

Aliases for ANKRD20A12P Gene

  • Ankyrin Repeat Domain 20 Family Member A12, Pseudogene 2 3
  • Ankyrin Repeat Domain 20 Family, Member A12, Pseudogene 2

External Ids for ANKRD20A12P Gene

Previous GeneCards Identifiers for ANKRD20A12P Gene

  • GC01M142713
  • GC04M8D0161

Summaries for ANKRD20A12P Gene

GeneCards Summary for ANKRD20A12P Gene

ANKRD20A12P (Ankyrin Repeat Domain 20 Family Member A12, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD20A12P Gene

Genomics for ANKRD20A12P Gene

Products:

  1. Regulatory Element

Genomic Location for ANKRD20A12P Gene

Chromosome:
4
Start:
161,987 bp from pter
End:
178,171 bp from pter
Size:
16,185 bases
Orientation:
Minus strand

Genomic View for ANKRD20A12P Gene

Genes around ANKRD20A12P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ANKRD20A12P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANKRD20A12P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for ANKRD20A12P Gene

No data available for Regulatory Elements for ANKRD20A12P Gene

Proteins for ANKRD20A12P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for ANKRD20A12P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NF67-A2012_HUMAN
    Recommended name:
    Putative ankyrin repeat domain-containing protein 20A12 pseudogene
    Protein Accession:
    Q8NF67

    Protein attributes for ANKRD20A12P Gene

    Size:
    263 amino acids
    Molecular mass:
    31171 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC03393.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for ANKRD20A12P Gene

Protein Expression for ANKRD20A12P Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for ANKRD20A12P Gene

No Post-translational modifications

No data available for DME Specific Peptides for ANKRD20A12P Gene

Domains & Families for ANKRD20A12P Gene

Protein Domains for ANKRD20A12P Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ANKRD20A12P: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ANKRD20A12P Gene

Function for ANKRD20A12P Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Phenotypes for ANKRD20A12P Gene

GenomeRNAi human phenotypes for ANKRD20A12P:
genes like me logo Genes that share phenotypes with ANKRD20A12P: view

Animal Model Products

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Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKRD20A12P Gene

Localization for ANKRD20A12P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ANKRD20A12P Gene

Pathways & Interactions for ANKRD20A12P Gene

SuperPathways for ANKRD20A12P Gene

PathCards logo More details on SuperPathways for ANKRD20A12P
No Data Available

Interacting Proteins for ANKRD20A12P Gene

Selected Interacting proteins: Q8NF67-A2012_HUMAN for ANKRD20A12P Gene via IID

Symbol External ID(s) Details
UBE2E3

Gene Ontology (GO) - Biological Process for ANKRD20A12P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ANKRD20A12P Gene

Drugs & Compounds for ANKRD20A12P Gene

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  1. Drug
No Compound Related Data Available

Transcripts for ANKRD20A12P Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for ANKRD20A12P Gene

(2) Additional mRNA sequences :

Unigene Clusters for ANKRD20A12P Gene

Ankyrin repeat domain 20 family, member A12, pseudogene:
Representative Sequences:

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD20A12P Gene

No ASD Table

Relevant External Links for ANKRD20A12P Gene

GeneLoc Exon Structure for
ANKRD20A12P
ECgene alternative splicing isoforms for
ANKRD20A12P

Expression for ANKRD20A12P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ANKRD20A12P Gene

mRNA expression in normal human tissues for ANKRD20A12P Gene
mRNA expression by GTEx for ANKRD20A12P Gene

mRNA differential expression in normal tissues according to GTEx for ANKRD20A12P Gene

This gene is overexpressed in Adipose - Subcutaneous (x5.4), Spleen (x5.4), Lung (x5.1), Heart - Left Ventricle (x4.7), and Adipose - Visceral (Omentum) (x4.3).

Protein differential expression in normal tissues from HIPED for ANKRD20A12P Gene

This gene is overexpressed in Spinal cord (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ANKRD20A12P Gene



Protein tissue co-expression partners for ANKRD20A12P Gene

NURSA nuclear receptor signaling pathways regulating expression of ANKRD20A12P Gene:

ANKRD20A12P

SOURCE GeneReport for Unigene cluster for ANKRD20A12P Gene:

Hs.648245
genes like me logo Genes that share expression patterns with ANKRD20A12P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for ANKRD20A12P Gene

Orthologs for ANKRD20A12P Gene

No data available for Orthologs and Evolution for ANKRD20A12P Gene

Paralogs for ANKRD20A12P Gene

No data available for Paralogs for ANKRD20A12P Gene

Variants for ANKRD20A12P Gene

Sequence variations from dbSNP and Humsavar for ANKRD20A12P Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs10127470 -- 142,704,709(+) TAAGC(C/T)TGCAC intron-variant
rs10443342 -- 142,711,207(+) GTTAT(A/G/T)TAATT intron-variant
rs10449838 -- 142,710,448(+) ctaca(A/G)cagag intron-variant
rs111231772 -- 141,639,776(+) AATGA(A/T)TATAT intron-variant
rs111600548 -- 141,641,511(+) GTGAA(A/C)TAAAT intron-variant

Relevant External Links for ANKRD20A12P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANKRD20A12P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ANKRD20A12P Gene

Disorders for ANKRD20A12P Gene

Relevant External Links for ANKRD20A12P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ANKRD20A12P

No disorders were found for ANKRD20A12P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD20A12P Gene

Publications for ANKRD20A12P Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ANKRD20A12P Gene

Sources for ANKRD20A12P Gene

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