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Aliases for ANKRD20A11P Gene

Aliases for ANKRD20A11P Gene

  • Ankyrin Repeat Domain 20 Family Member A11, Pseudogene 2 3 5
  • Ankyrin Repeat Domain 20 Family, Member A11, Pseudogene 2
  • Ankyrin Repeat Domain 20 Family, Member A3 Pseudogene 3
  • Ankyrin Repeat Domain 20 Family, Member A4 Pseudogene 3
  • Chromosome 21 Open Reading Frame 81 2
  • C21orf81 3

External Ids for ANKRD20A11P Gene

Previous HGNC Symbols for ANKRD20A11P Gene

  • C21orf81

Previous GeneCards Identifiers for ANKRD20A11P Gene

  • GC21U900439
  • GC21M015284
  • GC21M015288

Summaries for ANKRD20A11P Gene

GeneCards Summary for ANKRD20A11P Gene

ANKRD20A11P (Ankyrin Repeat Domain 20 Family Member A11, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD20A11P Gene

Genomics for ANKRD20A11P Gene

Regulatory Elements for ANKRD20A11P Gene

Enhancers for ANKRD20A11P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21G013980 0.8 ENCODE 19 +0.2 190 0.2 HDAC1 ATF1 RB1 SIN3A RAD21 EGR1 RELB KLF13 ELF4 ELF1 ANKRD20A11P PIR53268
GH21G014280 0.6 Ensembl ENCODE 4.9 -300.8 -300848 0.7 ZNF592 ABCC13 RBM11 ANKRD20A11P GC21P014363
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ANKRD20A11P on UCSC Golden Path with GeneCards custom track

Promoters for ANKRD20A11P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000140294 443 1200 HDAC1 TBP RB1 SIN3A RAD21 EGR1 RELB KLF13 ELF1 REST

Genomic Location for ANKRD20A11P Gene

Chromosome:
21
Start:
13,909,574 bp from pter
End:
13,980,444 bp from pter
Size:
70,871 bases
Orientation:
Minus strand

Genomic View for ANKRD20A11P Gene

Genes around ANKRD20A11P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ANKRD20A11P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANKRD20A11P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD20A11P Gene

Proteins for ANKRD20A11P Gene

Post-translational modifications for ANKRD20A11P Gene

No Post-translational modifications

No data available for DME Specific Peptides for ANKRD20A11P Gene

Domains & Families for ANKRD20A11P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ANKRD20A11P Gene

Function for ANKRD20A11P Gene

Animal Model Products

miRNA for ANKRD20A11P Gene

miRTarBase miRNAs that target ANKRD20A11P

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ANKRD20A11P Gene

Localization for ANKRD20A11P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ANKRD20A11P Gene

Pathways & Interactions for ANKRD20A11P Gene

SuperPathways for ANKRD20A11P Gene

No Data Available

Interacting Proteins for ANKRD20A11P Gene

Gene Ontology (GO) - Biological Process for ANKRD20A11P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ANKRD20A11P Gene

Transcripts for ANKRD20A11P Gene

mRNA/cDNA for ANKRD20A11P Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ANKRD20A11P Gene

Ankyrin repeat domain 20 family, member A11, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD20A11P Gene

No ASD Table

Relevant External Links for ANKRD20A11P Gene

GeneLoc Exon Structure for
ANKRD20A11P
ECgene alternative splicing isoforms for
ANKRD20A11P

Expression for ANKRD20A11P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ANKRD20A11P Gene

mRNA differential expression in normal tissues according to GTEx for ANKRD20A11P Gene

This gene is overexpressed in Esophagus - Mucosa (x15.4) and Testis (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of ANKRD20A11P Gene:

ANKRD20A11P

SOURCE GeneReport for Unigene cluster for ANKRD20A11P Gene:

Hs.364456
genes like me logo Genes that share expression patterns with ANKRD20A11P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKRD20A11P Gene

Orthologs for ANKRD20A11P Gene

Evolution for ANKRD20A11P Gene

ENSEMBL:
Gene Tree for ANKRD20A11P (if available)
TreeFam:
Gene Tree for ANKRD20A11P (if available)

No data available for Orthologs for ANKRD20A11P Gene

Paralogs for ANKRD20A11P Gene

No data available for Paralogs for ANKRD20A11P Gene

Variants for ANKRD20A11P Gene

Sequence variations from dbSNP and Humsavar for ANKRD20A11P Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs1000015294 -- 13,980,611(+) ACCTG(C/T)CCCCT upstream-variant-2KB
rs1000067568 -- 13,980,771(+) GTGCC(C/G)TCCCA upstream-variant-2KB
rs1000123942 -- 13,955,369(+) ATAGG(-/A)AGAGT intron-variant
rs1000239261 -- 13,959,678(+) CCCCT(A/G)CTCAT intron-variant
rs1000381579 -- 13,970,221(+) CATAA(A/T)AACAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ANKRD20A11P Gene

Variant ID Type Subtype PubMed ID
dgv4378n100 CNV gain 25217958
dgv4385n100 CNV gain 25217958
dgv7751n54 CNV gain 21841781
dgv7757n54 CNV gain 21841781
dgv93e203 CNV gain+loss 21179565
esv1005089 OTHER inversion 20482838
esv25073 CNV gain 19812545
esv2508507 CNV loss 19546169
esv2723170 CNV deletion 23290073
esv2723171 CNV deletion 23290073
esv2751923 CNV loss 17911159
esv2758809 CNV gain+loss 17122850
esv3434603 CNV duplication 20981092
esv3557457 CNV deletion 23714750
esv3568104 CNV loss 25503493
esv3646414 CNV gain 21293372
esv3893363 CNV gain 25118596
esv3893369 CNV loss 25118596
nsv1058202 CNV loss 25217958
nsv1059465 CNV gain 25217958
nsv1062730 CNV loss 25217958
nsv1131620 CNV deletion 24896259
nsv953339 CNV duplication 24416366
nsv962692 CNV duplication 23825009
nsv962693 CNV duplication 23825009
nsv962694 CNV duplication 23825009
nsv962695 CNV duplication 23825009
nsv964516 CNV duplication 23825009
nsv965971 CNV duplication 23825009
nsv966000 CNV duplication 23825009
nsv966001 CNV duplication 23825009
nsv966002 CNV duplication 23825009
nsv979556 CNV duplication 23825009
nsv979557 CNV duplication 23825009
nsv979558 CNV duplication 23825009
nsv9853 CNV gain 18304495

Relevant External Links for ANKRD20A11P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANKRD20A11P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ANKRD20A11P Gene

Disorders for ANKRD20A11P Gene

Relevant External Links for ANKRD20A11P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ANKRD20A11P

No disorders were found for ANKRD20A11P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD20A11P Gene

Publications for ANKRD20A11P Gene

  1. Nineteen additional unpredicted transcripts from human chromosome 21. (PMID: 12036297) Reymond A. … Antonarakis S.E. (Genomics 2002) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ANKRD20A11P Gene

Sources for ANKRD20A11P Gene

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