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Aliases for ANKRD20A1 Gene

Aliases for ANKRD20A1 Gene

  • Ankyrin Repeat Domain 20 Family, Member A1 2 3
  • Ankyrin Repeat Domain 20A 2 3
  • ANKRD20A 3 4
  • Ankyrin Repeat Domain-Containing Protein 20A1 3

External Ids for ANKRD20A1 Gene

Previous HGNC Symbols for ANKRD20A1 Gene

  • ANKRD20A

Previous GeneCards Identifiers for ANKRD20A1 Gene

  • GC09P066417
  • GC09P067517
  • GC09P067926
  • GC02M089509

Summaries for ANKRD20A1 Gene

GeneCards Summary for ANKRD20A1 Gene

ANKRD20A1 (Ankyrin Repeat Domain 20 Family, Member A1) is a Protein Coding gene. An important paralog of this gene is ANKRD20A3.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD20A1 Gene

Genomics for ANKRD20A1 Gene

Regulatory Elements for ANKRD20A1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ANKRD20A1 Gene

Start:
67,859,147 bp from pter
End:
67,902,394 bp from pter
Size:
43,248 bases
Orientation:
Plus strand

Genomic View for ANKRD20A1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ANKRD20A1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD20A1 Gene

Proteins for ANKRD20A1 Gene

  • Protein details for ANKRD20A1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5TYW2-A20A1_HUMAN
    Recommended name:
    Ankyrin repeat domain-containing protein 20A1
    Protein Accession:
    Q5TYW2
    Secondary Accessions:
    • Q9H0H6

    Protein attributes for ANKRD20A1 Gene

    Size:
    823 amino acids
    Molecular mass:
    94048 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ANKRD20A1 Gene

Proteomics data for ANKRD20A1 Gene at MOPED

Post-translational modifications for ANKRD20A1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ANKRD20A1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ANKRD20A1 Gene

Domains for ANKRD20A1 Gene

Gene Families for ANKRD20A1 Gene

HGNC:
  • ANKRD :Ankyrin repeat domain containing

Protein Domains for ANKRD20A1 Gene

Suggested Antigen Peptide Sequences for ANKRD20A1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5TYW2

UniProtKB/Swiss-Prot:

A20A1_HUMAN :
  • Q5TYW2
Similarity:
  • Contains 5 ANK repeats.
genes like me logo Genes that share domains with ANKRD20A1: view

Function for ANKRD20A1 Gene

Gene Ontology (GO) - Molecular Function for ANKRD20A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with ANKRD20A1: view

Phenotypes for ANKRD20A1 Gene

genes like me logo Genes that share phenotypes with ANKRD20A1: view

Animal Model Products

CRISPR Products

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate ANKRD20A1
    • Block miRNA regulation of ANKRD20A1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for ANKRD20A1

    In Situ Assay Products

    Flow Cytometry Products

    No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ANKRD20A1 Gene

    Localization for ANKRD20A1 Gene

    Subcellular locations from

    COMPARTMENTS
    Jensen Localization Image for ANKRD20A1 Gene COMPARTMENTS Subcellular localization image for ANKRD20A1 gene
    Compartment Confidence
    plasma membrane 4
    nucleus 3
    cytosol 2

    Gene Ontology (GO) - Cellular Components for ANKRD20A1 Gene

    GO ID Qualified GO term Evidence PubMed IDs
    GO:0005886 plasma membrane IDA --
    genes like me logo Genes that share ontologies with ANKRD20A1: view

    No data available for Subcellular locations from UniProtKB/Swiss-Prot for ANKRD20A1 Gene

    Pathways for ANKRD20A1 Gene

    SuperPathways for ANKRD20A1 Gene

    No Data Available

    Interacting Proteins for ANKRD20A1 Gene

    Gene Ontology (GO) - Biological Process for ANKRD20A1 Gene

    None

    No data available for Pathways by source for ANKRD20A1 Gene

    Transcripts for ANKRD20A1 Gene

    mRNA/cDNA for ANKRD20A1 Gene

    (14) Selected AceView cDNA sequences:
    (4) REFSEQ mRNAs :
    (1) Additional mRNA sequences :
    (7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

    Unigene Clusters for ANKRD20A1 Gene

    Ankyrin repeat domain 20 family, member A1:
    Representative Sequences:

    CRISPR Products

    miRNA Products

    • QIAGEN qRT-PCR Assays for microRNAs that regulate ANKRD20A1
      • Block miRNA regulation of ANKRD20A1 using miScript Target Protectors

      Inhibitory RNA Products

      • Predesigned siRNA for gene silencing in human,mouse,rat for ANKRD20A1

      Primer Products

      • OriGene qSTAR qPCR primer pairs in human,mouse,rat for ANKRD20A1
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat

      Flow Cytometry Products

      Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD20A1 Gene

      No ASD Table

      Relevant External Links for ANKRD20A1 Gene

      GeneLoc Exon Structure for
      ANKRD20A1
      ECgene alternative splicing isoforms for
      ANKRD20A1

      Expression for ANKRD20A1 Gene

      mRNA expression in normal human tissues for ANKRD20A1 Gene

      mRNA differential expression in normal tissues according to GTEx for ANKRD20A1 Gene

      This gene is overexpressed in Testis (7.2).

      Integrated Proteomics: protein expression from ProteomicsDB and MOPED for ANKRD20A1 Gene

      SOURCE GeneReport for Unigene cluster for ANKRD20A1 Gene Hs.632671

      genes like me logo Genes that share expressions with ANKRD20A1: view

      In Situ Assay Products

      No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for ANKRD20A1 Gene

      Orthologs for ANKRD20A1 Gene

      This gene was present in the common ancestor of human and chimp.

      Orthologs for ANKRD20A1 Gene

      Organism Taxonomy Gene Similarity Type Details
      chimpanzee
      (Pan troglodytes)
      Mammalia LOC738297 35
      • 98.58 (n)
      • 96.84 (a)
      Species with no ortholog for ANKRD20A1:
      • A. gosspyii yeast (Ashbya gossypii)
      • Actinobacteria (Mycobacterium tuberculosis)
      • African clawed frog (Xenopus laevis)
      • African malaria mosquito (Anopheles gambiae)
      • Alicante grape (Vitis vinifera)
      • alpha proteobacteria (Wolbachia pipientis)
      • amoeba (Dictyostelium discoideum)
      • Archea (Pyrococcus horikoshii)
      • baker's yeast (Saccharomyces cerevisiae)
      • barley (Hordeum vulgare)
      • beta proteobacteria (Neisseria meningitidis)
      • bread mold (Neurospora crassa)
      • chicken (Gallus gallus)
      • Chromalveolata (Phytophthora infestans)
      • common water flea (Daphnia pulex)
      • corn (Zea mays)
      • cow (Bos Taurus)
      • dog (Canis familiaris)
      • E. coli (Escherichia coli)
      • filamentous fungi (Aspergillus nidulans)
      • Firmicute bacteria (Streptococcus pneumoniae)
      • fission yeast (Schizosaccharomyces pombe)
      • fruit fly (Drosophila melanogaster)
      • green algae (Chlamydomonas reinhardtii)
      • honey bee (Apis mellifera)
      • K. lactis yeast (Kluyveromyces lactis)
      • lizard (Anolis carolinensis)
      • loblloly pine (Pinus taeda)
      • malaria parasite (Plasmodium falciparum)
      • medicago trunc (Medicago Truncatula)
      • moss (Physcomitrella patens)
      • mouse (Mus musculus)
      • oppossum (Monodelphis domestica)
      • orangutan (Pongo pygmaeus)
      • pig (Sus scrofa)
      • platypus (Ornithorhynchus anatinus)
      • rainbow trout (Oncorhynchus mykiss)
      • rat (Rattus norvegicus)
      • rice (Oryza sativa)
      • rice blast fungus (Magnaporthe grisea)
      • schistosome parasite (Schistosoma mansoni)
      • sea anemone (Nematostella vectensis)
      • sea squirt (Ciona intestinalis)
      • sea squirt (Ciona savignyi)
      • sea urchin (Strongylocentrotus purpuratus)
      • sorghum (Sorghum bicolor)
      • soybean (Glycine max)
      • stem rust fungus (Puccinia graminis)
      • sugarcane (Saccharum officinarum)
      • thale cress (Arabidopsis thaliana)
      • tomato (Lycopersicon esculentum)
      • toxoplasmosis (Toxoplasma gondii)
      • Trichoplax (Trichoplax adhaerens)
      • tropical clawed frog (Silurana tropicalis)
      • wheat (Triticum aestivum)
      • worm (Caenorhabditis elegans)
      • zebrafish (Danio rerio)

      Evolution for ANKRD20A1 Gene

      ENSEMBL:
      Gene Tree for ANKRD20A1 (if available)
      TreeFam:
      Gene Tree for ANKRD20A1 (if available)

      Paralogs for ANKRD20A1 Gene

      Paralogs for ANKRD20A1 Gene

      genes like me logo Genes that share paralogs with ANKRD20A1: view

      Variants for ANKRD20A1 Gene

      Sequence variations from dbSNP and Humsavar for ANKRD20A1 Gene

      SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
      rs1848632 -- 67,885,396(+) ACCTC(A/C)CCACA intron-variant
      rs1848670 -- 67,870,724(-) GTTTA(A/T)ATGTT intron-variant
      rs2457287 -- 67,866,343(-) TAAGA(A/G)GAAAT intron-variant
      rs2678748 -- 67,870,786(+) TCCTT(A/G)TTTTT intron-variant
      rs2940886 -- 67,873,003(-) AGTCC(A/C)AGCTA intron-variant

      Structural Variations from Database of Genomic Variants (DGV) for ANKRD20A1 Gene

      Variant ID Type Subtype PubMed ID
      dgv133n16 OTHER Inversion 17901297
      nsv893356 CNV Gain 21882294
      esv1000243 CNV Deletion 20482838
      esv2738489 CNV Deletion 23290073
      nsv893386 CNV Gain 21882294
      essv996 CNV CNV 17122850
      nsv428217 CNV Gain 18775914
      dgv2376e1 CNV Complex 17122850
      dgv2377e1 CNV Complex 17122850
      nsv893390 CNV Loss 21882294
      nsv893391 CNV Loss 21882294
      nsv8505 CNV Gain+Loss 18304495
      dgv8236n71 CNV Loss 21882294

      Relevant External Links for ANKRD20A1 Gene

      HapMap Linkage Disequilibrium report
      ANKRD20A1

      No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ANKRD20A1 Gene

      Disorders for ANKRD20A1 Gene

      No disorders were found for ANKRD20A1 Gene.

      No data available for UniProtKB/Swiss-Prot for ANKRD20A1 Gene

      Publications for ANKRD20A1 Gene

      1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 4
      2. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
      3. From ORFeome to biology: a functional genomics pipeline. (PMID: 15489336) Wiemann S. … Poustka A. (Genome Res. 2004) 3
      4. The LIFEdb database in 2006. (PMID: 16381901) Mehrle A. … Wiemann S. (Nucleic Acids Res. 2006) 3
      5. Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. (PMID: 11256614) Simpson J.C. … Wiemann S. (EMBO Rep. 2000) 3

      Products for ANKRD20A1 Gene

      • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
      • QIAGEN qRT-PCR Assays for microRNAs that regulate ANKRD20A1
        • QuantiTect SYBR Green Assays in human,mouse,rat
        • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
        • QuantiFast Probe-based Assays in human,mouse,rat
        • Predesigned siRNA for gene silencing in human,mouse,rat for ANKRD20A1
        • Block miRNA regulation of ANKRD20A1 using miScript Target Protectors

        Sources for ANKRD20A1 Gene

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