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Aliases for ANKRD20A1 Gene

Aliases for ANKRD20A1 Gene

  • Ankyrin Repeat Domain 20 Family, Member A1 2 3
  • Ankyrin Repeat Domain 20A 2 3
  • ANKRD20A 3 4
  • Ankyrin Repeat Domain-Containing Protein 20A1 3

External Ids for ANKRD20A1 Gene

Previous Symbols for ANKRD20A1 Gene

  • ANKRD20A

Summaries for ANKRD20A1 Gene

GeneCards Summary for ANKRD20A1 Gene

ANKRD20A1 (Ankyrin Repeat Domain 20 Family, Member A1) is a Protein Coding gene. An important paralog of this gene is ANKRD20A3.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD20A1 Gene

Genomics for ANKRD20A1 Gene

Genomic Location for ANKRD20A1 Gene

Start:
67,859,147 bp from pter
End:
67,902,394 bp from pter
Size:
43,248 bases
Orientation:
Plus strand

Genomic View for ANKRD20A1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ANKRD20A1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD20A1 Gene

Regulatory Elements for ANKRD20A1 Gene

Proteins for ANKRD20A1 Gene

  • Protein details for ANKRD20A1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5TYW2-A20A1_HUMAN
    Recommended name:
    Ankyrin repeat domain-containing protein 20A1
    Protein Accession:
    Q5TYW2
    Secondary Accessions:
    • Q9H0H6

    Protein attributes for ANKRD20A1 Gene

    Size:
    823 amino acids
    Molecular mass:
    94048 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ANKRD20A1 Gene

Proteomics data for ANKRD20A1 Gene at MOPED

Post-translational modifications for ANKRD20A1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ANKRD20A1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ANKRD20A1 Gene

Domains for ANKRD20A1 Gene

Gene Families for ANKRD20A1 Gene

HGNC:
  • ANKRD :Ankyrin repeat domain containing

Protein Domains for ANKRD20A1 Gene

Suggested Antigen Peptide Sequences for ANKRD20A1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5TYW2

UniProtKB/Swiss-Prot:

A20A1_HUMAN
Similarity:
  • Contains 5 ANK repeats.:
    • Q5TYW2
genes like me logo Genes that share domains with ANKRD20A1: view

Function for ANKRD20A1 Gene

Gene Ontology (GO) - Molecular Function for ANKRD20A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with ANKRD20A1: view

Phenotypes for ANKRD20A1 Gene

genes like me logo Genes that share phenotypes with ANKRD20A1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ANKRD20A1 Gene

Localization for ANKRD20A1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ANKRD20A1 Gene COMPARTMENTS Subcellular localization image for ANKRD20A1 gene
Compartment Confidence
plasma membrane 4
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for ANKRD20A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IDA --
genes like me logo Genes that share ontologies with ANKRD20A1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for ANKRD20A1 Gene

Pathways for ANKRD20A1 Gene

SuperPathways for ANKRD20A1 Gene

No Data Available

Interacting Proteins for ANKRD20A1 Gene

Gene Ontology (GO) - Biological Process for ANKRD20A1 Gene

None

No data available for Pathways by source for ANKRD20A1 Gene

Transcripts for ANKRD20A1 Gene

mRNA/cDNA for ANKRD20A1 Gene

(4) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(14) Selected AceView cDNA sequences:
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ANKRD20A1 Gene

Ankyrin repeat domain 20 family, member A1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD20A1 Gene

No ASD Table

Relevant External Links for ANKRD20A1 Gene

GeneLoc Exon Structure for
ANKRD20A1
ECgene alternative splicing isoforms for
ANKRD20A1

Expression for ANKRD20A1 Gene

mRNA expression in normal human tissues for ANKRD20A1 Gene

mRNA differential expression in normal tissues according to GTEx for ANKRD20A1 Gene

This gene is overexpressed in Testis (7.2).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for ANKRD20A1 Gene

SOURCE GeneReport for Unigene cluster for ANKRD20A1 Gene Hs.632671

genes like me logo Genes that share expressions with ANKRD20A1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for ANKRD20A1 Gene

Orthologs for ANKRD20A1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for ANKRD20A1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC738297 35
  • 98.58 (n)
  • 96.84 (a)
Species with no ortholog for ANKRD20A1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ANKRD20A1 Gene

ENSEMBL:
Gene Tree for ANKRD20A1 (if available)
TreeFam:
Gene Tree for ANKRD20A1 (if available)

Paralogs for ANKRD20A1 Gene

Paralogs for ANKRD20A1 Gene

genes like me logo Genes that share paralogs with ANKRD20A1: view

Variants for ANKRD20A1 Gene

Sequence variations from dbSNP and Humsavar for ANKRD20A1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs1848632 -- 67,885,396(+) ACCTC(A/C)CCACA intron-variant
rs1848670 -- 67,870,724(-) GTTTA(A/T)ATGTT intron-variant
rs2457287 -- 67,866,343(-) TAAGA(A/G)GAAAT intron-variant
rs2678748 -- 67,870,786(+) TCCTT(A/G)TTTTT intron-variant
rs2940886 -- 67,873,003(-) AGTCC(A/C)AGCTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ANKRD20A1 Gene

Variant ID Type Subtype PubMed ID
dgv133n16 OTHER Inversion 17901297
nsv893356 CNV Gain 21882294
esv1000243 CNV Deletion 20482838
esv2738489 CNV Deletion 23290073
nsv893386 CNV Gain 21882294
essv996 CNV CNV 17122850
nsv428217 CNV Gain 18775914
dgv2376e1 CNV Complex 17122850
dgv2377e1 CNV Complex 17122850
nsv893390 CNV Loss 21882294
nsv893391 CNV Loss 21882294
nsv8505 CNV Gain+Loss 18304495
dgv8236n71 CNV Loss 21882294

Relevant External Links for ANKRD20A1 Gene

HapMap Linkage Disequilibrium report
ANKRD20A1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ANKRD20A1 Gene

Disorders for ANKRD20A1 Gene

No disorders were found for ANKRD20A1 Gene.

No data available for UniProtKB/Swiss-Prot for ANKRD20A1 Gene

Publications for ANKRD20A1 Gene

  1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 4
  2. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
  3. From ORFeome to biology: a functional genomics pipeline. (PMID: 15489336) Wiemann S. … Poustka A. (Genome Res. 2004) 3
  4. The LIFEdb database in 2006. (PMID: 16381901) Mehrle A. … Wiemann S. (Nucleic Acids Res. 2006) 3
  5. Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. (PMID: 11256614) Simpson J.C. … Wiemann S. (EMBO Rep. 2000) 3

Products for ANKRD20A1 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate ANKRD20A1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for ANKRD20A1
    • Block miRNA regulation of ANKRD20A1 using miScript Target Protectors

    Sources for ANKRD20A1 Gene

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