ANKRD20A1 Gene
protein-coding GIFtS: 38
GCID: GC09P067926
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ankyrin repeat domain 20 family, member A1(Previous name: ankyrin repeat domain 20A )
(Previous symbol: ANKRD20A)
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Aliases
for ANKRD20A1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Ankyrin Repeat Domain 20 Family, Member A11 2 | | ANKRD20A1 2 3 | | Ankyrin Repeat Domain 20A1 2 | | DKFZp434A1711 | | Ankyrin Repeat Domain-Containing Protein 20A12 |
Export aliases for ANKRD20A1 gene to outside databasesPrevious GC identifers: GC09P066417 GC09P067517 GC02M089509 |
Summaries
for ANKRD20A1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for ANKRD20A1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_018920.1 NC_000009.11 NT_078066.4
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the ANKRD20A1 gene promoter:
TBP CUTL1 YY1 Evi-1 POU2F1 POU2F1b POU2F1a POU2F1c TGIF
Other transcription factors
Search SABiosciences Chromatin IP Primers for ANKRD20A1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ANKRD20A1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 9q13 Ensembl cytogenetic band: 9q13 HGNC cytogenetic band: 9p12ANKRD20A1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 9 GeneLoc Exon Structure GeneLoc location for GC09P067926: view genomic region
(about GC identifiers)
Start:
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67,926,761 bp from pter |
End:
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67,969,840 bp from pter |
Size:
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43,080 bases |
Orientation:
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plus strand |
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Proteins
for ANKRD20A1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: A20A1_HUMAN, Q5TYW2 (See
protein sequence)Recommended Name: Ankyrin repeat domain-containing protein 20A1 Size: 823 amino acids; 94048 Da
Secondary accessions: Q9H0H6Explore the universe of human proteins at neXtProt for ANKRD20A1: NX_Q5TYW2
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q5TYW2
ANKRD20A1 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_115626.2
ENSEMBL proteins: ENSP00000366697
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005886 | plasma membrane |
IDA | -- |
ANKRD20A1 for ontologies About GeneDecksing
ANKRD20A1 Antibody Products:
Assay Products for ANKRD20A1: |
Protein
Domains /
Families
for ANKRD20A1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
ANKRD20A1 for domains About GeneDecksing
2 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q5TYW2ProtoNet protein and cluster: Q5TYW2 UniProtKB/Swiss-Prot: A20A1_HUMAN, Q5TYW2Similarity: Contains 5 ANK repeats |
Function
for ANKRD20A1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ANKRD20A1
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ANKRD20A1
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ANKRD20A1 |
2 GenomeRNAi human phenotypes for ANKRD20A1:
|
Pathways & Interactions
for ANKRD20A1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ANKRD20A1
|
Drugs & Compounds
for ANKRD20A1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for ANKRD20A1
Search CenterWatch for drugs/clinical trials and news about ANKRD20A1 / A20A1
|
Transcripts
for ANKRD20A1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for ANKRD20A1 gene: NM_032250.3 Unigene Cluster for ANKRD20A1: Ankyrin repeat domain 20 family, member A1 Hs.632671 [show with all ESTs]Unigene Representative Sequence: AL1367931 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000377477(uc004aeu.3 uc010mnn.3)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ANKRD20A1
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ANKRD20A1
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: ANKRD20A1 (NM_032250) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ANKRD20A1 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ANKRD20A1 |
Additional cDNA sequence: AL136793.1 8 DOTS entries: DT.433698 DT.121156750 DT.121166145 DT.121169869 DT.120958690 DT.121156699 DT.121186179 DT.95241138 14 AceView cDNA sequences: AW182400 BP349185 AA363705 NM_032250 AL136793 BU569565 BM984472 M79082 BU852794 BX478214 BI035374 BE072622 BG209427 BF360942
GeneLoc Exon Structure
|
Expression
for ANKRD20A1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| ANKRD20A1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
See ANKRD20A1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for ANKRD20A1
SOURCE GeneReport for Unigene cluster: Hs.632671
SABiosciences Custom PCR Arrays for ANKRD20A1
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ANKRD20A1
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat ANKRD20A1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ANKRD20A1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ANKRD20A1 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ANKRD20A1 |
Orthologs
for ANKRD20A1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for ANKRD20A1 gene from 3/7 species (see all 7) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
chicken
(Gallus gallus) |
Aves |
ANKRD626 |
Uncharacterized protein |
23(a) |
1 → many |
1(26091172-26138404) |
lizard
(Anolis carolinensis) |
Reptilia |
ANKRD626 |
-- |
44(a) |
1 → many |
GL344195.1(39104-48393) |
zebrafish
(Danio rerio) |
Actinopterygii |
si:ch211-272n13.36 |
si:ch211-272n13.3 |
9(a) |
1 → many |
25(3581527-3655709) |
ENSEMBL Gene Tree for ANKRD20A1 (if available)
TreeFam Gene Tree for ANKRD20A1 (if available) |
Paralogs
for ANKRD20A1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for ANKRD20A1 gene
- ANKRD20A31 2 ANKRD20A21 2 ANKRD20A41 2 POTEF2 POTEI2 ANKRD30A2 ANKRD362 ANKRD72
- POTEB2 ANKRD30BL2 POTEH2 ENSG000001552822 ANKRD30B2 ENSG000002663022 ANKRD36C2 POTEJ2
- POTEC2 POTEG2 ANKRD262 ANKRD622 ANKRD18A2 ENSG000001882192 POTEM2 LOC1009963312
- CCDC144A2 POTED2 ANKRD18B2 LOC1002889662
18 SIMAP similar genes for ANKRD20A1 using alignment to 1 protein entry: A20A1_HUMAN:ANKRD20A2 ANKRD20A3 ANKRD20A4 ANKRD20A8P ANKRD19P ANKRD30BL
MGC26718 DKFZp781D1722 ANKRD36BP1 PRED4 POTEG ANKRD62
ANKRD18B POTEA ANKRD18A PSMD10 POTED POTEB
ANKRD20A1 for paralogs About GeneDecksing
|
Genomic Variants
for ANKRD20A1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 9 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for ANKRD20A1 (67926761 - 67969840 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 5 variations for ANKRD20A1
3 CNVs: 31508 3770 2819
2 Inversions: 29495 29496 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ANKRD20A1 |
|
Disorders
/ Diseases
for ANKRD20A1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for ANKRD20A1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for ANKRD20A1 gene integrated from 9 sources:
(articles sorted by number of sources associating them with ANKRD20A1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- DNA sequence and analysis of human chromosome 9. (PubMed id 15164053)1, 2 Humphray S.J.... Dunham I. (2004)
- Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166)1, 2 Wiemann S.... Poustka A. (2001)
- The LIFEdb database in 2006. (PubMed id 16381901)1 Mehrle A....Wiemann S. (2006)
- From ORFeome to biology: a functional genomics pipeline. (PubMed id 15489336)1 Wiemann S....Poustka A. (2004)
- Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. (PubMed id 11256614)1 Simpson J.C.... Wiemann S. (2000)
- DNA cloning using in vitro site-specific recombination. (PubMed id 11076863)1 Hartley J.L....Brasch M.A. (2000)
|
External Searches for ANKRD20A1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing ANKRD20A1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing ANKRD20A1 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ANKRD20A1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for ANKRD20A1 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for ANKRD20A1 gene:
Search GeneIP for patents involving ANKRD20A1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for ANKRD20A1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for ANKRD20A1 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ANKRD20A1 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ANKRD20A1 | | | OriGene Protein Over-expression Lysate for ANKRD20A1 | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for ANKRD20A1 | | OriGene 3'-UTR Clone for ANKRD20A1 | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ANKRD20A1 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ANKRD20A1 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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 | | | ANKRD20A1 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ANKRD20A1 |
|  |  |  | | | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ANKRD20A1 |
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