Aliases for ANKRD20A1 Gene
Aliases for ANKRD20A1 Gene
External Ids for ANKRD20A1 Gene
- HGNC: 23665
- Entrez Gene: 84210
- Ensembl: ENSG00000260691
- UniProtKB: Q5TYW2
Previous HGNC Symbols for ANKRD20A1 Gene
- ANKRD20A
Previous GeneCards Identifiers for ANKRD20A1 Gene
- GC09P066417
- GC09P067517
- GC09P067926
- GC02M089509
Summaries for ANKRD20A1 Gene
GeneCards Summary for ANKRD20A1 Gene
ANKRD20A1 (Ankyrin Repeat Domain 20 Family Member A1) is a Protein Coding gene. Diseases associated with ANKRD20A1 include Behcet Syndrome. An important paralog of this gene is ANKRD20A2.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD20A1 Gene
Genomics for ANKRD20A1 Gene
Regulatory Elements for ANKRD20A1 Gene
Promoters for ANKRD20A1 Gene
| Ensembl Regulatory Elements (ENSRs) | TSS Distance (bp) | Size (bp) | Binding Sites for Transcription Factors within promoters |
|---|---|---|---|
| ENSR00000235459 | 253 | 1200 | CTCF |
Regulatory Element Products
Genomic Location for ANKRD20A1 Gene
- Chromosome:
- 9
- Start:
- 67,859,147 bp from pter
- End:
- 67,902,394 bp from pter
- Size:
- 43,248 bases
- Orientation:
- Plus strand
Genomic View for ANKRD20A1 Gene
Genes around ANKRD20A1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 9q21.11 by Ensembl
- 9q21.11 by Entrez Gene
- 9q21.11 by HGNC
ANKRD20A1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for ANKRD20A1 Gene
Proteins for ANKRD20A1 Gene
-
Protein details for ANKRD20A1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q5TYW2-A20A1_HUMAN
- Recommended name:
- Ankyrin repeat domain-containing protein 20A1
- Protein Accession:
- Q5TYW2
- Q9H0H6
Protein attributes for ANKRD20A1 Gene
- Size:
- 823 amino acids
- Molecular mass:
- 94048 Da
- Quaternary structure:
- No Data Available
Protein Expression for ANKRD20A1 Gene
Post-translational modifications for ANKRD20A1 Gene
Other Protein References for ANKRD20A1 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
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-
Abcam antibodies for ANKRD20A1
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-
Santa Cruz Biotechnology (SCBT) Antibodies for ANKRD20A1
Protein Products
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OriGene Purified Proteins for ANKRD20A1
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- Search GeneTex for Proteins for ANKRD20A1
Assay Products
No data available for DME Specific Peptides for ANKRD20A1 Gene
Domains & Families for ANKRD20A1 Gene
Gene Families for ANKRD20A1 Gene
Protein Domains for ANKRD20A1 Gene
- InterPro:
- ProtoNet:
Suggested Antigen Peptide Sequences for ANKRD20A1 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
No data available for UniProtKB/Swiss-Prot for ANKRD20A1 Gene
Function for ANKRD20A1 Gene
Phenotypes for ANKRD20A1 Gene
- GenomeRNAi human phenotypes for ANKRD20A1:
Animal Model Products
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-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
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Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKRD20A1 Gene
Localization for ANKRD20A1 Gene
| Compartment | Confidence |
|---|---|
| plasma membrane | 4 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005886 | plasma membrane | IDA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot for ANKRD20A1 Gene
Transcripts for ANKRD20A1 Gene
mRNA/cDNA for ANKRD20A1 Gene
- (3) REFSEQ mRNAs :
- (1) Additional mRNA sequences :
- (69) Selected AceView cDNA sequences:
- (7) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for ANKRD20A1 Gene
CRISPR Products
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OriGene CRISPR knockouts for ANKRD20A1
-
Santa Cruz Biotechnology (SCBT) CRISPR for ANKRD20A1
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miRNA Products
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Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for ANKRD20A1
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Clone Products
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- VectorBuilder custom plasmid, inducible vectors for ANKRD20A1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ANKRD20A1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for ANKRD20A1 Gene
mRNA differential expression in normal tissues according to GTEx for ANKRD20A1 Gene
This gene is overexpressed in Testis (x7.2).
This gene is overexpressed in Pancreatic juice (69.0).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ANKRD20A1 Gene
NURSA nuclear receptor signaling pathways regulating expression of ANKRD20A1 Gene:
ANKRD20A1SOURCE GeneReport for Unigene cluster for ANKRD20A1 Gene:
Hs.632671Primer Products
-
OriGene qPCR primer pairs for ANKRD20A1
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKRD20A1 Gene
Orthologs for ANKRD20A1 Gene
This gene was present in the common ancestor of human and chimp.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | LOC738297 34 |
|
- Species where no ortholog for ANKRD20A1 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- cow (Bos Taurus)
- dog (Canis familiaris)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- mouse (Mus musculus)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for ANKRD20A1 Gene
Paralogs for ANKRD20A1 Gene
- ANKRD20A2 5
- ANKRD20A3 5
- ANKRD20A4 5
- ANKRD26 5
- ANKRD18B 5
- ANKRD18A 5
- ANKRD62 5
- ANKRD30B 5
- ANKRD30A 5
- ANKRD36C 5
- ANKRD36 5
- ANKRD36B 5
- ENSG00000266302 5
- CCDC144A 5
- POTEA 5
- POTEE 5
- POTEF 5
- POTEI 5
- POTEJ 5
- LOC100288966 5
- POTEB2 5
- POTED 5
- POTEB 5
- LOC102723502 5
- POTEB3 5
- POTEC 5
- POTEH 5
- POTEM 5
- POTEG 5
- ANKRD7 5
- ANKRD30BL 5
- ANKRD20A3 34
- ANKRD20A2 34
- ANKRD20A4 34
(18) SIMAP similar genes for ANKRD20A1 Gene using alignment to 1 proteins:
Pseudogenes.org Pseudogenes for ANKRD20A1 Gene
Variants for ANKRD20A1 Gene
| SNP ID | Clin | Chr 09 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000594903 | -- | 67,892,711(+) | ACCTC(A/C)AACTC | intron-variant | |
| rs1000960790 | -- | 67,891,148(+) | AATTA(C/G)CTGGG | intron-variant | |
| rs1001447391 | -- | 67,886,176(+) | TGGGG(A/T)CTTGG | intron-variant | |
| rs1001883648 | -- | 67,882,641(+) | TTACT(C/T)TTTAT | intron-variant | |
| rs1002481347 | -- | 67,895,978(+) | AGAAT(C/G)TTCTC | intron-variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| nsv1076174 | CNV | deletion | 25765185 |
| nsv1076670 | CNV | duplication | 25765185 |
| nsv1119302 | CNV | duplication | 24896259 |
| nsv1151719 | CNV | duplication | 26484159 |
| nsv614536 | CNV | loss | 21841781 |
| nsv951479 | CNV | duplication | 24416366 |
| nsv969656 | CNV | duplication | 23825009 |
| nsv969657 | CNV | duplication | 23825009 |
| nsv969658 | CNV | duplication | 23825009 |
| nsv969659 | CNV | duplication | 23825009 |
| nsv973330 | CNV | duplication | 23825009 |
| nsv973331 | CNV | duplication | 23825009 |
| nsv973332 | CNV | duplication | 23825009 |
| nsv973695 | CNV | duplication | 23825009 |
| nsv973699 | CNV | duplication | 23825009 |
| nsv982493 | CNV | duplication | 23825009 |
Gene Damage Index Score:
6.12;
75.55% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for ANKRD20A1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- ANKRD20A1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ANKRD20A1 Gene
Disorders for ANKRD20A1 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| behcet syndrome |
|
|
Search ANKRD20A1 in MalaCards
View complete list of genes associated with diseases
Relevant External Links for ANKRD20A1
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- ANKRD20A1
No data available for UniProtKB/Swiss-Prot and Genatlas for ANKRD20A1 Gene
Publications for ANKRD20A1 Gene
- DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4 64
- Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 4 64
- Proteomic analyses reveal distinct chromatin-associated and soluble transcription factor complexes. (PMID: 25609649) Li X. … Chen J. (Mol. Syst. Biol. 2015) 3 64
- Seroreactivity against PTEN-induced putative kinase 1 (PINK1) in Turkish patients with BehAset's disease. (PMID: 19796537) Vural B. … Ozbek U. (Clin. Exp. Rheumatol. 2009) 3 64
- The LIFEdb database in 2006. (PMID: 16381901) Mehrle A. … Wiemann S. (Nucleic Acids Res. 2006) 3 64
Products for ANKRD20A1 Gene
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- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for ANKRD20A1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
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- (18) KEGG
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- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
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- (86) GenomeRNAi
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- (88) miRTarBase
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- (100) COMPARTMENTS
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- (110) PathCards
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- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer